RNA–Protein interactions for RNA: ENST00000523488.5

CSMD1-213, Transcript of CUB and Sushi multiple domains 1, humanhuman

TSL 1 (best)

Gene CSMD1, Length 3,714 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CSMD1-213ENST00000523488 LOC102723971A0A1B0GUV8 181 aa7.36□□□□□ -1.23
CSMD1-213ENST00000523488 A0A1W2PPQ1 181 aa7.36□□□□□ -1.23
CSMD1-213ENST00000523488 SDCBPO00560 298 aaPredicted RBP7.36□□□□□ -1.23
CSMD1-213ENST00000523488 XRCC2O43543 280 aa7.36□□□□□ -1.23
CSMD1-213ENST00000523488 PITX3O75364 302 aa7.36□□□□□ -1.23
CSMD1-213ENST00000523488 CTRLP40313 264 aa7.36□□□□□ -1.23
CSMD1-213ENST00000523488 NOVA1P51513 510 aaKnown RBP7.36□□□□□ -1.23
CSMD1-213ENST00000523488 MTCP1P56278 107 aa7.36□□□□□ -1.23
CSMD1-213ENST00000523488 CSNK2A1P68400 391 aaPredicted RBP7.36□□□□□ -1.23
CSMD1-213ENST00000523488 ZNF74Q16587 644 aa7.36□□□□□ -1.23
CSMD1-213ENST00000523488 ALG10Q5BKT4 473 aa7.36□□□□□ -1.23
CSMD1-213ENST00000523488 ZNF880Q6PDB4 577 aa7.36□□□□□ -1.23
CSMD1-213ENST00000523488 KCTD18Q6PI47 426 aaPredicted RBP7.36□□□□□ -1.23
CSMD1-213ENST00000523488 CPEB3Q8NE35 698 aaKnown RBP7.36□□□□□ -1.23
CSMD1-213ENST00000523488 CSNK2A3Q8NEV1 391 aa7.36□□□□□ -1.23
CSMD1-213ENST00000523488 GPR119Q8TDV5 335 aa7.36□□□□□ -1.23
CSMD1-213ENST00000523488 OR5B12Q96R08 314 aa7.36□□□□□ -1.23
CSMD1-213ENST00000523488 SLC22A12Q96S37 553 aa7.36□□□□□ -1.23
CSMD1-213ENST00000523488 SERINC2Q96SA4 455 aa7.36□□□□□ -1.23
CSMD1-213ENST00000523488 CISD1Q9NZ45 108 aaKnown RBP7.36□□□□□ -1.23
CSMD1-213ENST00000523488 AK3Q9UIJ7 227 aa7.36□□□□□ -1.23
CSMD1-213ENST00000523488 B4E171 279 aa7.36□□□□□ -1.23
CSMD1-213ENST00000523488 HPRT1P00492 218 aa7.36□□□□□ -1.23
CSMD1-213ENST00000523488 BGLAPP02818 100 aa7.36□□□□□ -1.23
CSMD1-213ENST00000523488 BCKDHBP21953 392 aa7.36□□□□□ -1.23
CSMD1-213ENST00000523488 RND3P61587 244 aa7.36□□□□□ -1.23
CSMD1-213ENST00000523488 SLC25A24Q6NUK1 477 aa7.36□□□□□ -1.23
CSMD1-213ENST00000523488 C17orf78Q8N4C9 275 aa7.36□□□□□ -1.23
CSMD1-213ENST00000523488 SLC26A10Q8NG04 563 aa7.36□□□□□ -1.23
CSMD1-213ENST00000523488 OR56B2PQ8NGI1 322 aa7.36□□□□□ -1.23
CSMD1-213ENST00000523488 MBD3L1Q8WWY6 194 aa7.36□□□□□ -1.23
CSMD1-213ENST00000523488 HLA-CQ95604 372 aa7.36□□□□□ -1.23
CSMD1-213ENST00000523488 RAB11FIP5Q9BXF6 653 aa7.36□□□□□ -1.23
CSMD1-213ENST00000523488 TUBG2Q9NRH3 451 aa7.36□□□□□ -1.23
CSMD1-213ENST00000523488 SEMA5BQ9P283 1151 aa7.36□□□□□ -1.23
CSMD1-213ENST00000523488 LAMP3Q9UQV4 416 aa7.36□□□□□ -1.23
CSMD1-213ENST00000523488 POLR3KQ9Y2Y1 108 aaPredicted RBP7.36□□□□□ -1.23
CSMD1-213ENST00000523488 A8MXE2 369 aa7.36□□□□□ -1.23
CSMD1-213ENST00000523488 TIAF1O95411 115 aa7.36□□□□□ -1.23
CSMD1-213ENST00000523488 PNPP00491 289 aa7.36□□□□□ -1.23
CSMD1-213ENST00000523488 OPN1MWP04001 364 aa7.36□□□□□ -1.23
CSMD1-213ENST00000523488 CLPSP04118 112 aa7.36□□□□□ -1.23
CSMD1-213ENST00000523488 CTSDP07339 412 aaPredicted RBP7.36□□□□□ -1.23
CSMD1-213ENST00000523488 SLC35G6P0C7Q6 338 aa7.36□□□□□ -1.23
CSMD1-213ENST00000523488 OPN1MW2P0DN77 364 aa7.36□□□□□ -1.23
CSMD1-213ENST00000523488 OPN1MW3P0DN78 364 aa7.36□□□□□ -1.23
CSMD1-213ENST00000523488 APOBEC3AP31941 199 aaPredicted RBP7.36□□□□□ -1.23
CSMD1-213ENST00000523488 CTHP32929 405 aa7.36□□□□□ -1.23
CSMD1-213ENST00000523488 PPM1AP35813 382 aa7.36□□□□□ -1.23
CSMD1-213ENST00000523488 MLF2Q15773 248 aaPredicted RBP7.36□□□□□ -1.23
CSMD1-213ENST00000523488 FBXO46Q6PJ61 603 aaPredicted RBP7.36□□□□□ -1.23
CSMD1-213ENST00000523488 ZNF296Q8WUU4 475 aaPredicted RBP7.36□□□□□ -1.23
CSMD1-213ENST00000523488 EMG1Q92979 244 aaKnown RBP7.36□□□□□ -1.23
CSMD1-213ENST00000523488 LPAR4Q99677 370 aa7.36□□□□□ -1.23
CSMD1-213ENST00000523488 SH3BGRL3Q9H299 93 aa7.36□□□□□ -1.23
CSMD1-213ENST00000523488 GPR84Q9NQS5 396 aa7.36□□□□□ -1.23
CSMD1-213ENST00000523488 P4HTMQ9NXG6 502 aa7.36□□□□□ -1.23
CSMD1-213ENST00000523488 EHFQ9NZC4 300 aa7.36□□□□□ -1.23
CSMD1-213ENST00000523488 B3GALT5Q9Y2C3 310 aa7.36□□□□□ -1.23
CSMD1-213ENST00000523488 RCL1Q9Y2P8 373 aaKnown RBP7.36□□□□□ -1.23
CSMD1-213ENST00000523488 ZNF878C9JN71 531 aa7.35□□□□□ -1.23
CSMD1-213ENST00000523488 MPIG6BO95866 241 aa7.35□□□□□ -1.23
CSMD1-213ENST00000523488 PTGER4P35408 488 aa7.35□□□□□ -1.23
CSMD1-213ENST00000523488 COMPP49747 757 aaPredicted RBP7.35□□□□□ -1.23
CSMD1-213ENST00000523488 MAJINQ3KP22 176 aa7.35□□□□□ -1.23
CSMD1-213ENST00000523488 SLC18B1Q6NT16 456 aa7.35□□□□□ -1.23
CSMD1-213ENST00000523488 LIN28BQ6ZN17 250 aaKnown RBP eCLIP7.35□□□□□ -1.23
CSMD1-213ENST00000523488 RD3Q7Z3Z2 195 aa7.35□□□□□ -1.23
CSMD1-213ENST00000523488 GBGT1Q8N5D6 347 aa7.35□□□□□ -1.23
CSMD1-213ENST00000523488 OR4X1Q8NH49 305 aa7.35□□□□□ -1.23
CSMD1-213ENST00000523488 MRGPRDQ8TDS7 321 aa7.35□□□□□ -1.23
CSMD1-213ENST00000523488 MRPL24Q96A35 216 aaKnown RBP7.35□□□□□ -1.23
CSMD1-213ENST00000523488 RBMXL1Q96E39 390 aaKnown RBP7.35□□□□□ -1.23
CSMD1-213ENST00000523488 DIRC2Q96SL1 478 aa7.35□□□□□ -1.23
CSMD1-213ENST00000523488 VPS25Q9BRG1 176 aa7.35□□□□□ -1.23
CSMD1-213ENST00000523488 LPAR5Q9H1C0 372 aa7.35□□□□□ -1.23
CSMD1-213ENST00000523488 SLC2A9Q9NRM0 540 aa7.35□□□□□ -1.23
CSMD1-213ENST00000523488 ADAMTS20P59510 1910 aa7.35□□□□□ -1.23
CSMD1-213ENST00000523488 BRWD1Q9NSI6 2320 aa7.35□□□□□ -1.23
CSMD1-213ENST00000523488 CCDC85CA6NKD9 419 aa7.35□□□□□ -1.23
CSMD1-213ENST00000523488 C4orf47A7E2U8 309 aa7.35□□□□□ -1.23
CSMD1-213ENST00000523488 A8MVM7 634 aa7.35□□□□□ -1.23
CSMD1-213ENST00000523488 HOXA2O43364 376 aa7.35□□□□□ -1.23
CSMD1-213ENST00000523488 DIRAS3O95661 229 aa7.35□□□□□ -1.23
CSMD1-213ENST00000523488 FGF5P12034 268 aa7.35□□□□□ -1.23
CSMD1-213ENST00000523488 ZNF43P17038 809 aa7.35□□□□□ -1.23
CSMD1-213ENST00000523488 FUT3P21217 361 aa7.35□□□□□ -1.23
CSMD1-213ENST00000523488 ASCL1P50553 236 aa7.35□□□□□ -1.23
CSMD1-213ENST00000523488 ZNF41P51814 821 aaPredicted RBP7.35□□□□□ -1.23
CSMD1-213ENST00000523488 EGR4Q05215 589 aa7.35□□□□□ -1.23
CSMD1-213ENST00000523488 GNMTQ14749 295 aa7.35□□□□□ -1.23
CSMD1-213ENST00000523488 CLEC12BQ2HXU8 276 aa7.35□□□□□ -1.23
CSMD1-213ENST00000523488 TMEM144Q7Z5S9 345 aa7.35□□□□□ -1.23
CSMD1-213ENST00000523488 RABEPKQ7Z6M1 372 aa7.35□□□□□ -1.23
CSMD1-213ENST00000523488 HIST2H2ABQ8IUE6 130 aaPredicted RBP7.35□□□□□ -1.23
CSMD1-213ENST00000523488 ZNF100Q8IYN0 542 aa7.35□□□□□ -1.23
CSMD1-213ENST00000523488 TMEM123Q8N131 208 aa7.35□□□□□ -1.23
CSMD1-213ENST00000523488 NECAP1Q8NC96 275 aa7.35□□□□□ -1.23
CSMD1-213ENST00000523488 OR4D6Q8NGJ1 314 aa7.35□□□□□ -1.23
CSMD1-213ENST00000523488 TSPAN32Q96QS1 320 aa7.35□□□□□ -1.23
Retrieved 100 of 20,778 RNA–protein pairs in 33.6 ms