RNA–Protein interactions for RNA: ENST00000513248.1

NUP54-212, Transcript of nucleoporin 54, humanhuman

TSL 2

Gene NUP54, Length 531 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-212ENST00000513248 PRRC1Q96M27 445 aa2.93□□□□□ -1.94
NUP54-212ENST00000513248 FOXN4Q96NZ1 517 aa2.93□□□□□ -1.94
NUP54-212ENST00000513248 SH3GL3Q99963 347 aa2.93□□□□□ -1.94
NUP54-212ENST00000513248 HOPXQ9BPY8 73 aaPredicted RBP2.93□□□□□ -1.94
NUP54-212ENST00000513248 WFDC6Q9BQY6 131 aa2.93□□□□□ -1.94
NUP54-212ENST00000513248 BEX2Q9BXY8 128 aa2.93□□□□□ -1.94
NUP54-212ENST00000513248 SLC19A3Q9BZV2 496 aa2.93□□□□□ -1.94
NUP54-212ENST00000513248 POLR2J2Q9GZM3 115 aaKnown RBP2.93□□□□□ -1.94
NUP54-212ENST00000513248 POLR2J3Q9H1A7 115 aaKnown RBP2.93□□□□□ -1.94
NUP54-212ENST00000513248 TPK1Q9H3S4 243 aa2.93□□□□□ -1.94
NUP54-212ENST00000513248 ZNF385DQ9H6B1 395 aa2.93□□□□□ -1.94
NUP54-212ENST00000513248 MYOZ1Q9NP98 299 aaPredicted RBP2.93□□□□□ -1.94
NUP54-212ENST00000513248 RPS10P5Q9NQ39 176 aa2.93□□□□□ -1.94
NUP54-212ENST00000513248 GLTPQ9NZD2 209 aa2.93□□□□□ -1.94
NUP54-212ENST00000513248 ZNF229Q9UJW7 825 aa2.93□□□□□ -1.94
NUP54-212ENST00000513248 FBXL3Q9UKT7 428 aa2.93□□□□□ -1.94
NUP54-212ENST00000513248 ZNF346Q9UL40 294 aaKnown RBP2.93□□□□□ -1.94
NUP54-212ENST00000513248 FZR1Q9UM11 496 aa2.93□□□□□ -1.94
NUP54-212ENST00000513248 AURKCQ9UQB9 309 aa2.93□□□□□ -1.94
NUP54-212ENST00000513248 POLR1DQ9Y2S0 133 aa2.93□□□□□ -1.94
NUP54-212ENST00000513248 GMEB1Q9Y692 573 aa2.93□□□□□ -1.94
NUP54-212ENST00000513248 V9GYQ6 96 aa2.93□□□□□ -1.94
NUP54-212ENST00000513248 ANKHD1Q8IWZ3 2542 aaKnown RBP2.93□□□□□ -1.94
NUP54-212ENST00000513248 OTOGQ6ZRI0 2925 aa2.92□□□□□ -1.94
NUP54-212ENST00000513248 BSNQ9UPA5 3926 aa2.92□□□□□ -1.94
NUP54-212ENST00000513248 PDZD2O15018 2839 aa2.92□□□□□ -1.94
NUP54-212ENST00000513248 IGLV4-3A0A075B6K6 122 aa2.92□□□□□ -1.94
NUP54-212ENST00000513248 TRAV27A0A087WT01 109 aa2.92□□□□□ -1.94
NUP54-212ENST00000513248 A0A087X0K7 114 aa2.92□□□□□ -1.94
NUP54-212ENST00000513248 IGHV2OR16-5A0A0B4J2B6 119 aa2.92□□□□□ -1.94
NUP54-212ENST00000513248 LOC390937A0A1W2PQ73 354 aa2.92□□□□□ -1.94
NUP54-212ENST00000513248 A6NIZ1 184 aa2.92□□□□□ -1.94
NUP54-212ENST00000513248 C12orf71A8MTZ7 269 aa2.92□□□□□ -1.94
NUP54-212ENST00000513248 SRRM5B3KS81 715 aa2.92□□□□□ -1.94
NUP54-212ENST00000513248 RPL36A-HNRNPH2H7BZ11 118 aa2.92□□□□□ -1.94
NUP54-212ENST00000513248 H7C417 338 aa2.92□□□□□ -1.94
NUP54-212ENST00000513248 NDUFS8O00217 210 aa2.92□□□□□ -1.94
NUP54-212ENST00000513248 SIGLEC5O15389 551 aa2.92□□□□□ -1.94
NUP54-212ENST00000513248 PPIHO43447 177 aaKnown RBP2.92□□□□□ -1.94
NUP54-212ENST00000513248 CD5LO43866 347 aa2.92□□□□□ -1.94
NUP54-212ENST00000513248 DCTN3O75935 186 aa2.92□□□□□ -1.94
NUP54-212ENST00000513248 PDE5AO76074 875 aa2.92□□□□□ -1.94
NUP54-212ENST00000513248 LY6HO94772 140 aa2.92□□□□□ -1.94
NUP54-212ENST00000513248 THRBP10828 461 aa2.92□□□□□ -1.94
NUP54-212ENST00000513248 CCL2P13500 99 aa2.92□□□□□ -1.94
NUP54-212ENST00000513248 NCK1P16333 377 aa2.92□□□□□ -1.94
NUP54-212ENST00000513248 CALCRP30988 508 aa2.92□□□□□ -1.94
NUP54-212ENST00000513248 SRP14P37108 136 aaKnown RBP2.92□□□□□ -1.94
NUP54-212ENST00000513248 IFNGR2P38484 337 aa2.92□□□□□ -1.94
NUP54-212ENST00000513248 ALDH3B1P43353 468 aa2.92□□□□□ -1.94
NUP54-212ENST00000513248 GPR4P46093 362 aa2.92□□□□□ -1.94
NUP54-212ENST00000513248 GSK3BP49841 420 aa2.92□□□□□ -1.94
NUP54-212ENST00000513248 GZMMP51124 257 aa2.92□□□□□ -1.94
NUP54-212ENST00000513248 P2RY4P51582 365 aa2.92□□□□□ -1.94
NUP54-212ENST00000513248 ARHGDIAP52565 204 aa2.92□□□□□ -1.94
NUP54-212ENST00000513248 CRYBA2P53672 197 aa2.92□□□□□ -1.94
NUP54-212ENST00000513248 UGT2B15P54855 530 aa2.92□□□□□ -1.94
NUP54-212ENST00000513248 SMIM11AP58511 58 aa2.92□□□□□ -1.94
NUP54-212ENST00000513248 RAP1BP61224 184 aa2.92□□□□□ -1.94
NUP54-212ENST00000513248 PSME3P61289 254 aa2.92□□□□□ -1.94
NUP54-212ENST00000513248 PCBD1P61457 104 aa2.92□□□□□ -1.94
NUP54-212ENST00000513248 RAP1AP62834 184 aa2.92□□□□□ -1.94
NUP54-212ENST00000513248 ERVK-25P63136 954 aa2.92□□□□□ -1.94
NUP54-212ENST00000513248 SELENOWP63302 87 aa2.92□□□□□ -1.94
NUP54-212ENST00000513248 VLDLRP98155 873 aa2.92□□□□□ -1.94
NUP54-212ENST00000513248 MS4A2Q01362 244 aa2.92□□□□□ -1.94
NUP54-212ENST00000513248 SPIBQ01892 262 aa2.92□□□□□ -1.94
NUP54-212ENST00000513248 RPL18Q07020 188 aaKnown RBP2.92□□□□□ -1.94
NUP54-212ENST00000513248 MFGE8Q08431 387 aaPredicted RBP2.92□□□□□ -1.94
NUP54-212ENST00000513248 ZP4Q12836 540 aa2.92□□□□□ -1.94
NUP54-212ENST00000513248 MOGQ16653 247 aa2.92□□□□□ -1.94
NUP54-212ENST00000513248 CHRFAM7AQ494W8 412 aa2.92□□□□□ -1.94
NUP54-212ENST00000513248 LRRC37A5PQ49AS3 106 aa2.92□□□□□ -1.94
NUP54-212ENST00000513248 TCTEX1D4Q5JR98 221 aa2.92□□□□□ -1.94
NUP54-212ENST00000513248 PHYHD1Q5SRE7 291 aa2.92□□□□□ -1.94
NUP54-212ENST00000513248 GLYATQ6IB77 296 aa2.92□□□□□ -1.94
NUP54-212ENST00000513248 CGB2Q6NT52 195 aa2.92□□□□□ -1.94
NUP54-212ENST00000513248 SLC27A4Q6P1M0 643 aa2.92□□□□□ -1.94
NUP54-212ENST00000513248 SHQ1Q6PI26 577 aaKnown RBP2.92□□□□□ -1.94
NUP54-212ENST00000513248 ARL9Q6T311 187 aa2.92□□□□□ -1.94
NUP54-212ENST00000513248 WDR88Q6ZMY6 472 aa2.92□□□□□ -1.94
NUP54-212ENST00000513248 CALHM3Q86XJ0 350 aa2.92□□□□□ -1.94
NUP54-212ENST00000513248 SKA3Q8IX90 412 aa2.92□□□□□ -1.94
NUP54-212ENST00000513248 NRMQ8IXM6 262 aa2.92□□□□□ -1.94
NUP54-212ENST00000513248 SPAG16Q8N0X2 631 aa2.92□□□□□ -1.94
NUP54-212ENST00000513248 SLC22A24Q8N4F4 322 aa2.92□□□□□ -1.94
NUP54-212ENST00000513248 RNF148Q8N7C7 305 aa2.92□□□□□ -1.94
NUP54-212ENST00000513248 SLC30A7Q8NEW0 376 aa2.92□□□□□ -1.94
NUP54-212ENST00000513248 OR9Q2Q8NGE9 314 aa2.92□□□□□ -1.94
NUP54-212ENST00000513248 OR4D11Q8NGI4 311 aa2.92□□□□□ -1.94
NUP54-212ENST00000513248 C8orf46Q8TAG6 207 aa2.92□□□□□ -1.94
NUP54-212ENST00000513248 SYNPRQ8TBG9 265 aa2.92□□□□□ -1.94
NUP54-212ENST00000513248 FNDC8Q8TC99 324 aa2.92□□□□□ -1.94
NUP54-212ENST00000513248 TMEM54Q969K7 222 aa2.92□□□□□ -1.94
NUP54-212ENST00000513248 MCHR2Q969V1 340 aa2.92□□□□□ -1.94
NUP54-212ENST00000513248 TNFRSF13CQ96RJ3 184 aa2.92□□□□□ -1.94
NUP54-212ENST00000513248 C1orf198Q9H425 327 aa2.92□□□□□ -1.94
NUP54-212ENST00000513248 NARFLQ9H6Q4 476 aa2.92□□□□□ -1.94
NUP54-212ENST00000513248 ZNF442Q9H7R0 627 aa2.92□□□□□ -1.94
NUP54-212ENST00000513248 NOX3Q9HBY0 568 aa2.92□□□□□ -1.94
Retrieved 100 of 20,778 RNA–protein pairs in 131.2 ms