RNA–Protein interactions for RNA: ENST00000512946.5

LIMCH1-217, Transcript of LIM and calponin homology domains 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIMCH1, Length 5,057 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-217ENST00000512946 ROBO4Q8WZ75 1007 aa10.07□□□□□ -0.8
LIMCH1-217ENST00000512946 TEX37Q96LM6 180 aa10.07□□□□□ -0.8
LIMCH1-217ENST00000512946 MSL2Q9HCI7 577 aa10.07□□□□□ -0.8
LIMCH1-217ENST00000512946 TLCD2A6NGC4 264 aa10.07□□□□□ -0.8
LIMCH1-217ENST00000512946 MS4A18H0YCH9 400 aa10.07□□□□□ -0.8
LIMCH1-217ENST00000512946 COL8A1P27658 744 aa10.07□□□□□ -0.8
LIMCH1-217ENST00000512946 MS4A18Q3C1V0 323 aa10.07□□□□□ -0.8
LIMCH1-217ENST00000512946 APOBEC3DQ96AK3 386 aaPredicted RBP10.07□□□□□ -0.8
LIMCH1-217ENST00000512946 PRR14Q9BWN1 585 aa10.07□□□□□ -0.8
LIMCH1-217ENST00000512946 RCC2Q9P258 522 aaKnown RBP10.07□□□□□ -0.8
LIMCH1-217ENST00000512946 RIMS1Q86UR5 1692 aaKnown RBP10.07□□□□□ -0.8
LIMCH1-217ENST00000512946 ADAP1O75689 374 aa10.06□□□□□ -0.8
LIMCH1-217ENST00000512946 HLA-DRB1P01911 266 aa10.06□□□□□ -0.8
LIMCH1-217ENST00000512946 CLDN18P56856 261 aa10.06□□□□□ -0.8
LIMCH1-217ENST00000512946 TMEM255AQ5JRV8 349 aa10.06□□□□□ -0.8
LIMCH1-217ENST00000512946 ACSM6Q6P461 480 aa10.06□□□□□ -0.8
LIMCH1-217ENST00000512946 ZBTB34Q8NCN2 500 aa10.06□□□□□ -0.8
LIMCH1-217ENST00000512946 ABHD14BQ96IU4 210 aa10.06□□□□□ -0.8
LIMCH1-217ENST00000512946 HSPB9Q9BQS6 159 aa10.06□□□□□ -0.8
LIMCH1-217ENST00000512946 SLC25A22Q9H936 323 aa10.06□□□□□ -0.8
LIMCH1-217ENST00000512946 STARD5Q9NSY2 213 aa10.06□□□□□ -0.8
LIMCH1-217ENST00000512946 DAPP1Q9UN19 280 aa10.06□□□□□ -0.8
LIMCH1-217ENST00000512946 PSG11Q9UQ72 335 aa10.06□□□□□ -0.8
LIMCH1-217ENST00000512946 ZNF729A6NN14 1252 aaPredicted RBP10.06□□□□□ -0.8
LIMCH1-217ENST00000512946 PTP4A3O75365 173 aa10.06□□□□□ -0.8
LIMCH1-217ENST00000512946 FCARP24071 287 aa10.06□□□□□ -0.8
LIMCH1-217ENST00000512946 NIT1Q86X76 327 aa10.06□□□□□ -0.8
LIMCH1-217ENST00000512946 ZPBPQ9BS86 351 aa10.06□□□□□ -0.8
LIMCH1-217ENST00000512946 P2RY12Q9H244 342 aa10.06□□□□□ -0.8
LIMCH1-217ENST00000512946 A0A1B0GV90 55 aa10.06□□□□□ -0.8
LIMCH1-217ENST00000512946 NPIPB9F8W1W9 429 aa10.06□□□□□ -0.8
LIMCH1-217ENST00000512946 BCAT2O15382 392 aaPredicted RBP10.06□□□□□ -0.8
LIMCH1-217ENST00000512946 HMGA2P52926 109 aa10.06□□□□□ -0.8
LIMCH1-217ENST00000512946 PRTGQ2VWP7 1150 aa10.06□□□□□ -0.8
LIMCH1-217ENST00000512946 FAM219AQ8IW50 185 aa10.06□□□□□ -0.8
LIMCH1-217ENST00000512946 C10orf35Q96D05 121 aa10.06□□□□□ -0.8
LIMCH1-217ENST00000512946 KCNK7Q9Y2U2 307 aa10.06□□□□□ -0.8
LIMCH1-217ENST00000512946 LOC107984156A0A0G2JMH3 177 aa10.06□□□□□ -0.8
LIMCH1-217ENST00000512946 FBLL1A6NHQ2 334 aaKnown RBP10.06□□□□□ -0.8
LIMCH1-217ENST00000512946 GFYI3L273 518 aa10.06□□□□□ -0.8
LIMCH1-217ENST00000512946 COMPP49747 757 aaPredicted RBP10.06□□□□□ -0.8
LIMCH1-217ENST00000512946 HINT1P49773 126 aaPredicted RBP10.06□□□□□ -0.8
LIMCH1-217ENST00000512946 GAMTQ14353 236 aa10.06□□□□□ -0.8
LIMCH1-217ENST00000512946 MLF2Q15773 248 aaPredicted RBP10.06□□□□□ -0.8
LIMCH1-217ENST00000512946 FNDC7Q5VTL7 733 aa10.06□□□□□ -0.8
LIMCH1-217ENST00000512946 SAMD13Q5VXD3 122 aa10.06□□□□□ -0.8
LIMCH1-217ENST00000512946 ARL17AQ8IVW1 177 aa10.06□□□□□ -0.8
LIMCH1-217ENST00000512946 MORN4Q8NDC4 146 aa10.06□□□□□ -0.8
LIMCH1-217ENST00000512946 MRPL30Q8TCC3 161 aaKnown RBP10.06□□□□□ -0.8
LIMCH1-217ENST00000512946 KTI12Q96EK9 354 aaPredicted RBP10.06□□□□□ -0.8
LIMCH1-217ENST00000512946 C19orf67A6NJJ6 358 aa10.05□□□□□ -0.8
LIMCH1-217ENST00000512946 DHHO43323 396 aa10.05□□□□□ -0.8
LIMCH1-217ENST00000512946 PDCD6O75340 191 aa10.05□□□□□ -0.8
LIMCH1-217ENST00000512946 NUDT3O95989 172 aa10.05□□□□□ -0.8
LIMCH1-217ENST00000512946 TYMSP04818 313 aa10.05□□□□□ -0.8
LIMCH1-217ENST00000512946 PSMB5P28074 263 aa10.05□□□□□ -0.8
LIMCH1-217ENST00000512946 CCR5P51681 352 aa10.05□□□□□ -0.8
LIMCH1-217ENST00000512946 LIM2P55344 173 aa10.05□□□□□ -0.8
LIMCH1-217ENST00000512946 GNG3P63215 75 aa10.05□□□□□ -0.8
LIMCH1-217ENST00000512946 OR10V1Q8NGI7 309 aa10.05□□□□□ -0.8
LIMCH1-217ENST00000512946 OR1N2Q8NGR9 330 aa10.05□□□□□ -0.8
LIMCH1-217ENST00000512946 MVB12AQ96EY5 273 aa10.05□□□□□ -0.8
LIMCH1-217ENST00000512946 IP6K3Q96PC2 410 aa10.05□□□□□ -0.8
LIMCH1-217ENST00000512946 MARCH5Q9NX47 278 aa10.05□□□□□ -0.8
LIMCH1-217ENST00000512946 SLCO1C1Q9NYB5 712 aa10.05□□□□□ -0.8
LIMCH1-217ENST00000512946 TMEFF2Q9UIK5 374 aaPredicted RBP10.05□□□□□ -0.8
LIMCH1-217ENST00000512946 OR2W1Q9Y3N9 320 aa10.05□□□□□ -0.8
LIMCH1-217ENST00000512946 MRC1P22897 1456 aa10.05□□□□□ -0.8
LIMCH1-217ENST00000512946 ZC3H12DA2A288 527 aaKnown RBP10.05□□□□□ -0.8
LIMCH1-217ENST00000512946 H3BMH7 237 aa10.05□□□□□ -0.8
LIMCH1-217ENST00000512946 RECKO95980 971 aa10.05□□□□□ -0.8
LIMCH1-217ENST00000512946 SLURP2P0DP57 97 aa10.05□□□□□ -0.8
LIMCH1-217ENST00000512946 LPAR6P43657 344 aa10.05□□□□□ -0.8
LIMCH1-217ENST00000512946 IER3P46695 156 aa10.05□□□□□ -0.8
LIMCH1-217ENST00000512946 HSF5Q4G112 596 aaPredicted RBP10.05□□□□□ -0.8
LIMCH1-217ENST00000512946 SFRP2Q96HF1 295 aa10.05□□□□□ -0.8
LIMCH1-217ENST00000512946 C4orf45Q96LM5 186 aa10.05□□□□□ -0.8
LIMCH1-217ENST00000512946 MIXL1Q9H2W2 232 aa10.05□□□□□ -0.8
LIMCH1-217ENST00000512946 TMEM262E9PQX1 116 aa10.05□□□□□ -0.8
LIMCH1-217ENST00000512946 CDK2AP1O14519 115 aa10.05□□□□□ -0.8
LIMCH1-217ENST00000512946 PTGESO14684 152 aa10.05□□□□□ -0.8
LIMCH1-217ENST00000512946 LAMTOR5O43504 91 aa10.05□□□□□ -0.8
LIMCH1-217ENST00000512946 AKR7A3O95154 331 aa10.05□□□□□ -0.8
LIMCH1-217ENST00000512946 GNB1P62873 340 aa10.05□□□□□ -0.8
LIMCH1-217ENST00000512946 MEF2CQ06413 473 aaPredicted RBP10.05□□□□□ -0.8
LIMCH1-217ENST00000512946 ZNF260Q3ZCT1 412 aa10.05□□□□□ -0.8
LIMCH1-217ENST00000512946 ZG16BQ96DA0 208 aa10.05□□□□□ -0.8
LIMCH1-217ENST00000512946 TNFSF18Q9UNG2 199 aa10.05□□□□□ -0.8
LIMCH1-217ENST00000512946 OR51B4Q9Y5P0 310 aa10.05□□□□□ -0.8
LIMCH1-217ENST00000512946 MYH8P13535 1937 aa10.05□□□□□ -0.8
LIMCH1-217ENST00000512946 WTIPA6NIX2 430 aaPredicted RBP10.05□□□□□ -0.8
LIMCH1-217ENST00000512946 DHRS7CA6NNS2 312 aa10.05□□□□□ -0.8
LIMCH1-217ENST00000512946 SPINK4O60575 86 aa10.05□□□□□ -0.8
LIMCH1-217ENST00000512946 NTHL1P78549 312 aa10.05□□□□□ -0.8
LIMCH1-217ENST00000512946 MRPS21P82921 87 aaKnown RBP10.05□□□□□ -0.8
LIMCH1-217ENST00000512946 GUCA2AQ02747 115 aa10.05□□□□□ -0.8
LIMCH1-217ENST00000512946 C9orf135Q5VTT2 229 aa10.05□□□□□ -0.8
LIMCH1-217ENST00000512946 OR10S1Q8NGN2 331 aa10.05□□□□□ -0.8
LIMCH1-217ENST00000512946 NEUROG1Q92886 237 aa10.05□□□□□ -0.8
LIMCH1-217ENST00000512946 CACNG5Q9UF02 275 aa10.05□□□□□ -0.8
Retrieved 100 of 20,778 RNA–protein pairs in 30.4 ms