RNA–Protein interactions for RNA: ENST00000508465.5

NUP54-206, Transcript of nucleoporin 54, humanhuman

TSL 3

Gene NUP54, Length 744 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-206ENST00000508465 SHFQ7M4L6 423 aa3.77□□□□□ -1.81
NUP54-206ENST00000508465 SLC16A9Q7RTY1 509 aa3.77□□□□□ -1.81
NUP54-206ENST00000508465 PRSS45Q7RTY3 260 aa3.77□□□□□ -1.81
NUP54-206ENST00000508465 KCTD20Q7Z5Y7 419 aa3.77□□□□□ -1.81
NUP54-206ENST00000508465 KRT77Q7Z794 578 aa3.77□□□□□ -1.81
NUP54-206ENST00000508465 RFLNBQ8N5W9 214 aa3.77□□□□□ -1.81
NUP54-206ENST00000508465 OR5T2Q8NGG2 359 aa3.77□□□□□ -1.81
NUP54-206ENST00000508465 OR56B2PQ8NGI1 322 aa3.77□□□□□ -1.81
NUP54-206ENST00000508465 OR51F2Q8NH61 342 aa3.77□□□□□ -1.81
NUP54-206ENST00000508465 OTOSQ8NHW6 89 aa3.77□□□□□ -1.81
NUP54-206ENST00000508465 C22orf15Q8WYQ4 148 aa3.77□□□□□ -1.81
NUP54-206ENST00000508465 SEH1LQ96EE3 360 aa3.77□□□□□ -1.81
NUP54-206ENST00000508465 CENPNQ96H22 339 aaPredicted RBP3.77□□□□□ -1.81
NUP54-206ENST00000508465 REEP6Q96HR9 211 aa3.77□□□□□ -1.81
NUP54-206ENST00000508465 TBX5Q99593 518 aa3.77□□□□□ -1.81
NUP54-206ENST00000508465 CIB1Q99828 191 aa3.77□□□□□ -1.81
NUP54-206ENST00000508465 TMEM246Q9BRR3 403 aa3.77□□□□□ -1.81
NUP54-206ENST00000508465 TM2D2Q9BX73 214 aa3.77□□□□□ -1.81
NUP54-206ENST00000508465 TEX12Q9BXU0 123 aa3.77□□□□□ -1.81
NUP54-206ENST00000508465 MARCH7Q9H992 704 aa3.77□□□□□ -1.81
NUP54-206ENST00000508465 SLC25A19Q9HC21 320 aa3.77□□□□□ -1.81
NUP54-206ENST00000508465 C1orf123Q9NWV4 160 aa3.77□□□□□ -1.81
NUP54-206ENST00000508465 OPN4Q9UHM6 478 aa3.77□□□□□ -1.81
NUP54-206ENST00000508465 ATPIF1Q9UII2 106 aa3.77□□□□□ -1.81
NUP54-206ENST00000508465 LAMP5Q9UJQ1 280 aa3.77□□□□□ -1.81
NUP54-206ENST00000508465 COPS3Q9UNS2 423 aa3.77□□□□□ -1.81
NUP54-206ENST00000508465 SOX21Q9Y651 276 aaPredicted RBP3.77□□□□□ -1.81
NUP54-206ENST00000508465 IGHV3OR16-10A0A075B7F0 116 aa3.76□□□□□ -1.81
NUP54-206ENST00000508465 TMEM269A0A1B0GVZ9 245 aa3.76□□□□□ -1.81
NUP54-206ENST00000508465 A0A1B0GWJ7 208 aa3.76□□□□□ -1.81
NUP54-206ENST00000508465 hCG_1807616A0A1W2PRN6 198 aa3.76□□□□□ -1.81
NUP54-206ENST00000508465 LRRC30A6NM36 301 aa3.76□□□□□ -1.81
NUP54-206ENST00000508465 ANKRD30BLA7E2S9 258 aa3.76□□□□□ -1.81
NUP54-206ENST00000508465 ZNF850A8MQ14 1090 aa3.76□□□□□ -1.81
NUP54-206ENST00000508465 CEACAM18A8MTB9 384 aa3.76□□□□□ -1.81
NUP54-206ENST00000508465 EBAG9O00559 213 aa3.76□□□□□ -1.81
NUP54-206ENST00000508465 GMDSO60547 372 aa3.76□□□□□ -1.81
NUP54-206ENST00000508465 ENTPD6O75354 484 aa3.76□□□□□ -1.81
NUP54-206ENST00000508465 RPP14O95059 124 aaKnown RBP3.76□□□□□ -1.81
NUP54-206ENST00000508465 PNPP00491 289 aa3.76□□□□□ -1.81
NUP54-206ENST00000508465 GYPAP02724 150 aa3.76□□□□□ -1.81
NUP54-206ENST00000508465 LYNP07948 512 aa3.76□□□□□ -1.81
NUP54-206ENST00000508465 IRF2P14316 349 aa3.76□□□□□ -1.81
NUP54-206ENST00000508465 ANPEPP15144 967 aa3.76□□□□□ -1.81
NUP54-206ENST00000508465 ACKR3P25106 362 aa3.76□□□□□ -1.81
NUP54-206ENST00000508465 MDH2P40926 338 aaKnown RBP3.76□□□□□ -1.81
NUP54-206ENST00000508465 RAD23AP54725 363 aa3.76□□□□□ -1.81
NUP54-206ENST00000508465 ACTR3P61158 418 aa3.76□□□□□ -1.81
NUP54-206ENST00000508465 CSNK2BP67870 215 aa3.76□□□□□ -1.81
NUP54-206ENST00000508465 MFGE8Q08431 387 aaPredicted RBP3.76□□□□□ -1.81
NUP54-206ENST00000508465 OR8B8Q15620 311 aa3.76□□□□□ -1.81
NUP54-206ENST00000508465 ODF4Q2M2E3 257 aa3.76□□□□□ -1.81
NUP54-206ENST00000508465 KRTAP24-1Q3LI83 254 aa3.76□□□□□ -1.81
NUP54-206ENST00000508465 AADACL4Q5VUY2 407 aa3.76□□□□□ -1.81
NUP54-206ENST00000508465 DCAF12L2Q5VW00 463 aa3.76□□□□□ -1.81
NUP54-206ENST00000508465 SLX4IPQ5VYV7 408 aa3.76□□□□□ -1.81
NUP54-206ENST00000508465 C12orf73Q69YU5 71 aa3.76□□□□□ -1.81
NUP54-206ENST00000508465 SSX6Q7RTT6 188 aa3.76□□□□□ -1.81
NUP54-206ENST00000508465 WDR86Q86TI4 376 aa3.76□□□□□ -1.81
NUP54-206ENST00000508465 C11orf53Q8IXP5 236 aa3.76□□□□□ -1.81
NUP54-206ENST00000508465 PARP8Q8N3A8 854 aa3.76□□□□□ -1.81
NUP54-206ENST00000508465 FGFRL1Q8N441 504 aa3.76□□□□□ -1.81
NUP54-206ENST00000508465 CBR4Q8N4T8 237 aa3.76□□□□□ -1.81
NUP54-206ENST00000508465 OR8B12Q8NGG6 310 aa3.76□□□□□ -1.81
NUP54-206ENST00000508465 OR11L1Q8NGX0 322 aa3.76□□□□□ -1.81
NUP54-206ENST00000508465 TMEM163Q8TC26 289 aa3.76□□□□□ -1.81
NUP54-206ENST00000508465 OR51E1Q8TCB6 317 aa3.76□□□□□ -1.81
NUP54-206ENST00000508465 PIGCQ92535 297 aa3.76□□□□□ -1.81
NUP54-206ENST00000508465 RPL3LQ92901 407 aaKnown RBP3.76□□□□□ -1.81
NUP54-206ENST00000508465 RAB39BQ96DA2 213 aa3.76□□□□□ -1.81
NUP54-206ENST00000508465 RNF125Q96EQ8 232 aa3.76□□□□□ -1.81
NUP54-206ENST00000508465 DUS3LQ96G46 650 aaKnown RBP3.76□□□□□ -1.81
NUP54-206ENST00000508465 FAM71F1Q96KD3 344 aaPredicted RBP3.76□□□□□ -1.81
NUP54-206ENST00000508465 SLC29A1Q99808 456 aa3.76□□□□□ -1.81
NUP54-206ENST00000508465 ADAT1Q9BUB4 502 aaKnown RBP3.76□□□□□ -1.81
NUP54-206ENST00000508465 OSBPL10Q9BXB5 764 aa3.76□□□□□ -1.81
NUP54-206ENST00000508465 YIPF3Q9GZM5 350 aa3.76□□□□□ -1.81
NUP54-206ENST00000508465 MMADHCQ9H3L0 296 aaPredicted RBP3.76□□□□□ -1.81
NUP54-206ENST00000508465 FN3KRPQ9HA64 309 aa3.76□□□□□ -1.81
NUP54-206ENST00000508465 PATZ1Q9HBE1 687 aaKnown RBP3.76□□□□□ -1.81
NUP54-206ENST00000508465 G6PC2Q9NQR9 355 aa3.76□□□□□ -1.81
NUP54-206ENST00000508465 MSRB1Q9NZV6 116 aa3.76□□□□□ -1.81
NUP54-206ENST00000508465 IKZF2Q9UKS7 526 aa3.76□□□□□ -1.81
NUP54-206ENST00000508465 SIRT4Q9Y6E7 314 aaPredicted RBP3.76□□□□□ -1.81
NUP54-206ENST00000508465 PRPF8Q6P2Q9 2335 aaKnown RBP eCLIP3.76□□□□□ -1.813e-7■■■□□ 16.4
NUP54-206ENST00000508465 PPIAL4EA0A075B759 164 aa3.75□□□□□ -1.81
NUP54-206ENST00000508465 A0A0G2JMP0 313 aa3.75□□□□□ -1.81
NUP54-206ENST00000508465 A0A0X1KG70 313 aa3.75□□□□□ -1.81
NUP54-206ENST00000508465 hCG_38984A0A1B0GV85 526 aa3.75□□□□□ -1.81
NUP54-206ENST00000508465 A0A1B0GW55 424 aa3.75□□□□□ -1.81
NUP54-206ENST00000508465 A0A1W2PQL4 384 aaPredicted RBP3.75□□□□□ -1.81
NUP54-206ENST00000508465 PPIAL4DF5H284 164 aa3.75□□□□□ -1.81
NUP54-206ENST00000508465 IFNL4K9M1U5 179 aa3.75□□□□□ -1.81
NUP54-206ENST00000508465 P2RY10O00398 339 aa3.75□□□□□ -1.81
NUP54-206ENST00000508465 EI24O14681 340 aa3.75□□□□□ -1.81
NUP54-206ENST00000508465 CDIPTO14735 213 aa3.75□□□□□ -1.81
NUP54-206ENST00000508465 XRCC2O43543 280 aa3.75□□□□□ -1.81
NUP54-206ENST00000508465 FCN3O75636 299 aa3.75□□□□□ -1.81
NUP54-206ENST00000508465 VENTXO95231 258 aa3.75□□□□□ -1.81
NUP54-206ENST00000508465 DUX4L2P0CJ85 424 aa3.75□□□□□ -1.81
Retrieved 100 of 20,778 RNA–protein pairs in 44.4 ms