RNA–Protein interactions for RNA: ENST00000494566.5

CCDC88B-210, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 2

Gene CCDC88B, Length 2,909 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-210ENST00000494566 CXCL13O43927 109 aa14.41□□□□□ -0.1
CCDC88B-210ENST00000494566 ARG1P05089 322 aa14.41□□□□□ -0.1
CCDC88B-210ENST00000494566 HPNP05981 417 aa14.41□□□□□ -0.1
CCDC88B-210ENST00000494566 TCN2P20062 427 aa14.41□□□□□ -0.1
CCDC88B-210ENST00000494566 TAF9Q16594 264 aa14.41□□□□□ -0.1
CCDC88B-210ENST00000494566 FAM76BQ5HYJ3 339 aa14.41□□□□□ -0.1
CCDC88B-210ENST00000494566 ZNF774Q6NX45 483 aa14.41□□□□□ -0.1
CCDC88B-210ENST00000494566 M1APQ8TC57 530 aa14.41□□□□□ -0.1
CCDC88B-210ENST00000494566 ERGIC1Q969X5 290 aa14.41□□□□□ -0.1
CCDC88B-210ENST00000494566 IP6K3Q96PC2 410 aa14.41□□□□□ -0.1
CCDC88B-210ENST00000494566 CCDC187A0A096LP49 1063 aa14.41□□□□□ -0.1
CCDC88B-210ENST00000494566 FAM230AA0A1W2PPH8 454 aa14.41□□□□□ -0.1
CCDC88B-210ENST00000494566 ATXN7O15265 892 aaPredicted RBP14.41□□□□□ -0.1
CCDC88B-210ENST00000494566 TNFSF12O43508 249 aa14.41□□□□□ -0.1
CCDC88B-210ENST00000494566 CCL1P22362 96 aa14.41□□□□□ -0.1
CCDC88B-210ENST00000494566 ACKR3P25106 362 aa14.41□□□□□ -0.1
CCDC88B-210ENST00000494566 SUCLG1P53597 346 aaKnown RBP14.41□□□□□ -0.1
CCDC88B-210ENST00000494566 OR2B8PP59922 312 aa14.41□□□□□ -0.1
CCDC88B-210ENST00000494566 PJVKQ0ZLH3 352 aa14.41□□□□□ -0.1
CCDC88B-210ENST00000494566 PEA15Q15121 130 aa14.41□□□□□ -0.1
CCDC88B-210ENST00000494566 SWI5Q1ZZU3 235 aa14.41□□□□□ -0.1
CCDC88B-210ENST00000494566 ZNF528Q3MIS6 628 aa14.41□□□□□ -0.1
CCDC88B-210ENST00000494566 NAA11Q9BSU3 229 aaPredicted RBP14.41□□□□□ -0.1
CCDC88B-210ENST00000494566 OR10A2Q9H208 303 aa14.41□□□□□ -0.1
CCDC88B-210ENST00000494566 FBXL17Q9UF56 701 aa14.41□□□□□ -0.1
CCDC88B-210ENST00000494566 NDRG3Q9UGV2 375 aa14.41□□□□□ -0.1
CCDC88B-210ENST00000494566 MCTS1Q9ULC4 181 aaKnown RBP14.41□□□□□ -0.1
CCDC88B-210ENST00000494566 DBX1A6NMT0 343 aa14.4□□□□□ -0.1
CCDC88B-210ENST00000494566 LSM6P62312 80 aaKnown RBP14.4□□□□□ -0.1
CCDC88B-210ENST00000494566 SPEM2Q0P670 501 aa14.4□□□□□ -0.1
CCDC88B-210ENST00000494566 ZNF239Q16600 458 aaKnown RBP14.4□□□□□ -0.1
CCDC88B-210ENST00000494566 DHRS11Q6UWP2 260 aa14.4□□□□□ -0.1
CCDC88B-210ENST00000494566 TIPARPQ7Z3E1 657 aaKnown RBP14.4□□□□□ -0.1
CCDC88B-210ENST00000494566 PHYHIPLQ96FC7 376 aa14.4□□□□□ -0.1
CCDC88B-210ENST00000494566 FAAP24Q9BTP7 215 aa14.4□□□□□ -0.1
CCDC88B-210ENST00000494566 SH2D2AQ9NP31 389 aa14.4□□□□□ -0.1
CCDC88B-210ENST00000494566 A0A087WZY1 265 aa14.4□□□□□ -0.1
CCDC88B-210ENST00000494566 hCG_1809904A0A1W2PP81 198 aa14.4□□□□□ -0.1
CCDC88B-210ENST00000494566 A0A1W2PR64 198 aa14.4□□□□□ -0.1
CCDC88B-210ENST00000494566 A0A1W2PRV1 198 aa14.4□□□□□ -0.1
CCDC88B-210ENST00000494566 FGF16O43320 207 aa14.4□□□□□ -0.1
CCDC88B-210ENST00000494566 EIF3GO75821 320 aaKnown RBP eCLIP14.4□□□□□ -0.1
CCDC88B-210ENST00000494566 SNAPINO95295 136 aa14.4□□□□□ -0.1
CCDC88B-210ENST00000494566 CD79AP11912 226 aa14.4□□□□□ -0.1
CCDC88B-210ENST00000494566 DTWD2Q8NBA8 298 aa14.4□□□□□ -0.1
CCDC88B-210ENST00000494566 SUMF1Q8NBK3 374 aa14.4□□□□□ -0.1
CCDC88B-210ENST00000494566 HSD17B11Q8NBQ5 300 aa14.4□□□□□ -0.1
CCDC88B-210ENST00000494566 S100A13Q99584 98 aa14.4□□□□□ -0.1
CCDC88B-210ENST00000494566 DEPPQ9NTK1 212 aa14.4□□□□□ -0.1
CCDC88B-210ENST00000494566 ZFP57Q9NU63 452 aa14.4□□□□□ -0.1
CCDC88B-210ENST00000494566 LOC102725191A0A1B0GVB3 256 aa14.39□□□□□ -0.11
CCDC88B-210ENST00000494566 RAB19A4D1S5 217 aa14.39□□□□□ -0.11
CCDC88B-210ENST00000494566 PINLYPA6NC86 204 aa14.39□□□□□ -0.11
CCDC88B-210ENST00000494566 C3orf80F5H4A9 247 aa14.39□□□□□ -0.11
CCDC88B-210ENST00000494566 MFNGO00587 321 aa14.39□□□□□ -0.11
CCDC88B-210ENST00000494566 DHRS3O75911 302 aa14.39□□□□□ -0.11
CCDC88B-210ENST00000494566 CHRM2P08172 466 aa14.39□□□□□ -0.11
CCDC88B-210ENST00000494566 TMEM225BP0DP42 221 aa14.39□□□□□ -0.11
CCDC88B-210ENST00000494566 FCGR2CP31995 323 aa14.39□□□□□ -0.11
CCDC88B-210ENST00000494566 C10orf128Q5T292 105 aa14.39□□□□□ -0.11
CCDC88B-210ENST00000494566 PPP1R32Q7Z5V6 425 aa14.39□□□□□ -0.11
CCDC88B-210ENST00000494566 SLC30A7Q8NEW0 376 aa14.39□□□□□ -0.11
CCDC88B-210ENST00000494566 FGFBP3Q8TAT2 258 aa14.39□□□□□ -0.11
CCDC88B-210ENST00000494566 SSC4DQ8WTU2 575 aa14.39□□□□□ -0.11
CCDC88B-210ENST00000494566 ZNF845Q96IR2 970 aaPredicted RBP14.39□□□□□ -0.11
CCDC88B-210ENST00000494566 EIF5A2Q9GZV4 153 aaKnown RBP14.39□□□□□ -0.11
CCDC88B-210ENST00000494566 ZNF107Q9UII5 783 aaPredicted RBP14.39□□□□□ -0.11
CCDC88B-210ENST00000494566 FOXD3Q9UJU5 478 aaPredicted RBP14.39□□□□□ -0.11
CCDC88B-210ENST00000494566 PCSK5Q92824 1860 aa14.39□□□□□ -0.11
CCDC88B-210ENST00000494566 A6NLC8 198 aa14.39□□□□□ -0.11
CCDC88B-210ENST00000494566 EIF1BO60739 113 aaKnown RBP14.39□□□□□ -0.11
CCDC88B-210ENST00000494566 CBR3O75828 277 aa14.39□□□□□ -0.11
CCDC88B-210ENST00000494566 SNAPC5O75971 98 aa14.39□□□□□ -0.11
CCDC88B-210ENST00000494566 RAC1P63000 192 aa14.39□□□□□ -0.11
CCDC88B-210ENST00000494566 AVPI1Q5T686 147 aa14.39□□□□□ -0.11
CCDC88B-210ENST00000494566 PRSS54Q6PEW0 395 aa14.39□□□□□ -0.11
CCDC88B-210ENST00000494566 NECAB3Q96P71 396 aaPredicted RBP14.39□□□□□ -0.11
CCDC88B-210ENST00000494566 PIGQQ9BRB3 760 aa14.39□□□□□ -0.11
CCDC88B-210ENST00000494566 SH3BGRL3Q9H299 93 aa14.39□□□□□ -0.11
CCDC88B-210ENST00000494566 MMP26Q9NRE1 261 aa14.39□□□□□ -0.11
CCDC88B-210ENST00000494566 CER1O95813 267 aa14.38□□□□□ -0.11
CCDC88B-210ENST00000494566 P04436 131 aa14.38□□□□□ -0.11
CCDC88B-210ENST00000494566 B3GALT5-AS1P59052 145 aa14.38□□□□□ -0.11
CCDC88B-210ENST00000494566 ECH1Q13011 328 aa14.38□□□□□ -0.11
CCDC88B-210ENST00000494566 C9orf135Q5VTT2 229 aa14.38□□□□□ -0.11
CCDC88B-210ENST00000494566 OR56B1Q8NGI3 324 aa14.38□□□□□ -0.11
CCDC88B-210ENST00000494566 SGK3Q96BR1 496 aa14.38□□□□□ -0.11
CCDC88B-210ENST00000494566 SLC5A7Q9GZV3 580 aa14.38□□□□□ -0.11
CCDC88B-210ENST00000494566 MYOZ1Q9NP98 299 aaPredicted RBP14.38□□□□□ -0.11
CCDC88B-210ENST00000494566 PLEKHJ1Q9NW61 149 aa14.38□□□□□ -0.11
CCDC88B-210ENST00000494566 RCC2Q9P258 522 aaKnown RBP14.38□□□□□ -0.11
CCDC88B-210ENST00000494566 FBXO7Q9Y3I1 522 aa14.38□□□□□ -0.11
CCDC88B-210ENST00000494566 MED13Q9UHV7 2174 aa14.38□□□□□ -0.11
CCDC88B-210ENST00000494566 K7EPK0 472 aa14.38□□□□□ -0.11
CCDC88B-210ENST00000494566 TXNL1O43396 289 aa14.38□□□□□ -0.11
CCDC88B-210ENST00000494566 CSTBP04080 98 aaKnown RBP14.38□□□□□ -0.11
CCDC88B-210ENST00000494566 OMGP23515 440 aa14.38□□□□□ -0.11
CCDC88B-210ENST00000494566 RPL12P30050 165 aaKnown RBP14.38□□□□□ -0.11
CCDC88B-210ENST00000494566 RBMXP38159 391 aaKnown RBP14.38□□□□□ -0.11
CCDC88B-210ENST00000494566 RGS19P49795 217 aa14.38□□□□□ -0.11
Retrieved 100 of 20,778 RNA–protein pairs in 38.3 ms