RNA–Protein interactions for RNA: ENST00000492270.1

UPF3A-209, Transcript of UPF3A, regulator of nonsense mediated mRNA decay, humanhuman

TSL 2 BASIC

Gene UPF3A, Length 494 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3A-209ENST00000492270 IL24Q13007 206 aa20.3■□□□□ 0.84
UPF3A-209ENST00000492270 ALKBH1Q13686 389 aaKnown RBP20.3■□□□□ 0.84
UPF3A-209ENST00000492270 SLC9A3R2Q15599 337 aa20.3■□□□□ 0.84
UPF3A-209ENST00000492270 ZNF691Q5VV52 312 aa20.3■□□□□ 0.84
UPF3A-209ENST00000492270 C12orf54Q6X4T0 127 aa20.3■□□□□ 0.84
UPF3A-209ENST00000492270 SYS1Q8N2H4 156 aa20.3■□□□□ 0.84
UPF3A-209ENST00000492270 Q8N7P7 452 aa20.3■□□□□ 0.84
UPF3A-209ENST00000492270 CNIH3Q8TBE1 160 aa20.3■□□□□ 0.84
UPF3A-209ENST00000492270 CYGBQ8WWM9 190 aa20.3■□□□□ 0.84
UPF3A-209ENST00000492270 PP6455Q8WZ26 134 aa20.3■□□□□ 0.84
UPF3A-209ENST00000492270 GCDHQ92947 438 aaPredicted RBP20.3■□□□□ 0.84
UPF3A-209ENST00000492270 FGGYQ96C11 551 aa20.3■□□□□ 0.84
UPF3A-209ENST00000492270 MRPS18AQ9NVS2 196 aaKnown RBP20.3■□□□□ 0.84
UPF3A-209ENST00000492270 OR14J1Q9UGF5 321 aa20.3■□□□□ 0.84
UPF3A-209ENST00000492270 IGHV1-69DA0A0B4J2H0 117 aa20.29■□□□□ 0.84
UPF3A-209ENST00000492270 IGKV1-9A0A0C4DH69 117 aa20.29■□□□□ 0.84
UPF3A-209ENST00000492270 E9PI62 339 aa20.29■□□□□ 0.84
UPF3A-209ENST00000492270 F8VVB4 439 aa20.29■□□□□ 0.84
UPF3A-209ENST00000492270 F8VWA3 439 aa20.29■□□□□ 0.84
UPF3A-209ENST00000492270 IGHV1-69P01742 117 aa20.29■□□□□ 0.84
UPF3A-209ENST00000492270 CNN3Q15417 329 aaKnown RBP20.29■□□□□ 0.84
UPF3A-209ENST00000492270 KIR3DL3Q8N743 410 aa20.29■□□□□ 0.84
UPF3A-209ENST00000492270 GATAD2BQ8WXI9 593 aa20.29■□□□□ 0.84
UPF3A-209ENST00000492270 SLAMF9Q96A28 289 aa20.29■□□□□ 0.84
UPF3A-209ENST00000492270 C10orf35Q96D05 121 aa20.29■□□□□ 0.84
UPF3A-209ENST00000492270 BORCS8Q96FH0 119 aa20.29■□□□□ 0.84
UPF3A-209ENST00000492270 MRPL48Q96GC5 212 aaKnown RBP20.29■□□□□ 0.84
UPF3A-209ENST00000492270 MTCH1Q9NZJ7 389 aa20.29■□□□□ 0.84
UPF3A-209ENST00000492270 A0A1W2PQ09 198 aa20.28■□□□□ 0.84
UPF3A-209ENST00000492270 HOXA3O43365 443 aaPredicted RBP20.28■□□□□ 0.84
UPF3A-209ENST00000492270 SERPINA3P01011 423 aa20.28■□□□□ 0.84
UPF3A-209ENST00000492270 ZNF20P17024 532 aa20.28■□□□□ 0.84
UPF3A-209ENST00000492270 PRDX2P32119 198 aa20.28■□□□□ 0.84
UPF3A-209ENST00000492270 CAPZA1P52907 286 aa20.28■□□□□ 0.84
UPF3A-209ENST00000492270 BPIFB3P59826 476 aa20.28■□□□□ 0.84
UPF3A-209ENST00000492270 INPP5EQ9NRR6 644 aa20.28■□□□□ 0.84
UPF3A-209ENST00000492270 HHLA2Q9UM44 414 aa20.28■□□□□ 0.84
UPF3A-209ENST00000492270 FBN3Q75N90 2809 aa20.28■□□□□ 0.84
UPF3A-209ENST00000492270 RNASE1P07998 156 aaKnown RBP20.27■□□□□ 0.84
UPF3A-209ENST00000492270 LIMS3P0CW19 117 aa20.27■□□□□ 0.84
UPF3A-209ENST00000492270 LIMS4P0CW20 117 aa20.27■□□□□ 0.84
UPF3A-209ENST00000492270 KLRD1Q13241 179 aa20.27■□□□□ 0.84
UPF3A-209ENST00000492270 KLHL22Q53GT1 634 aa20.27■□□□□ 0.84
UPF3A-209ENST00000492270 SLC25A26Q70HW3 274 aa20.27■□□□□ 0.84
UPF3A-209ENST00000492270 CMTM4Q8IZR5 234 aa20.27■□□□□ 0.84
UPF3A-209ENST00000492270 PACRGLQ8N7B6 248 aa20.27■□□□□ 0.84
UPF3A-209ENST00000492270 ZNF676Q8N7Q3 588 aa20.27■□□□□ 0.84
UPF3A-209ENST00000492270 OR13C3Q8NGS6 347 aa20.27■□□□□ 0.84
UPF3A-209ENST00000492270 TAF15Q92804 592 aaKnown RBP eCLIP20.27■□□□□ 0.84
UPF3A-209ENST00000492270 ZDHHC16Q969W1 377 aa20.27■□□□□ 0.84
UPF3A-209ENST00000492270 DMRTB1Q96MA1 342 aa20.27■□□□□ 0.84
UPF3A-209ENST00000492270 PRDM13Q9H4Q3 707 aa20.27■□□□□ 0.84
UPF3A-209ENST00000492270 ZMAT3Q9HA38 289 aaKnown RBP20.27■□□□□ 0.84
UPF3A-209ENST00000492270 C19orf12Q9NSK7 152 aa20.27■□□□□ 0.84
UPF3A-209ENST00000492270 SLC1A7O00341 560 aa20.26■□□□□ 0.83
UPF3A-209ENST00000492270 ATF1P18846 271 aa20.26■□□□□ 0.83
UPF3A-209ENST00000492270 AZGP1P25311 298 aaKnown RBP20.26■□□□□ 0.83
UPF3A-209ENST00000492270 COMPP49747 757 aaPredicted RBP20.26■□□□□ 0.83
UPF3A-209ENST00000492270 ADARB1P78563 741 aaKnown RBP20.26■□□□□ 0.83
UPF3A-209ENST00000492270 UTS2BQ765I0 119 aa20.26■□□□□ 0.83
UPF3A-209ENST00000492270 RNF144BQ7Z419 303 aa20.26■□□□□ 0.83
UPF3A-209ENST00000492270 FAM185AQ8N0U4 392 aa20.26■□□□□ 0.83
UPF3A-209ENST00000492270 PIP4P2Q8N4L2 257 aa20.26■□□□□ 0.83
UPF3A-209ENST00000492270 ZNF561Q8N587 486 aa20.26■□□□□ 0.83
UPF3A-209ENST00000492270 CEP19Q96LK0 163 aa20.26■□□□□ 0.83
UPF3A-209ENST00000492270 FGF20Q9NP95 211 aaPredicted RBP20.26■□□□□ 0.83
UPF3A-209ENST00000492270 TNFRSF19Q9NS68 423 aa20.26■□□□□ 0.83
UPF3A-209ENST00000492270 A0A0U1RQK1 487 aa20.25■□□□□ 0.83
UPF3A-209ENST00000492270 RNASEK-C17orf49H0YIS7 233 aa20.25■□□□□ 0.83
UPF3A-209ENST00000492270 CLDN34H7C241 214 aa20.25■□□□□ 0.83
UPF3A-209ENST00000492270 ZFPL1O95159 310 aa20.25■□□□□ 0.83
UPF3A-209ENST00000492270 POU3F4P49335 361 aa20.25■□□□□ 0.83
UPF3A-209ENST00000492270 ATP1B3P54709 279 aa20.25■□□□□ 0.83
UPF3A-209ENST00000492270 DNAAF1Q8NEP3 725 aa20.25■□□□□ 0.83
UPF3A-209ENST00000492270 OR13C9Q8NGT0 318 aa20.25■□□□□ 0.83
UPF3A-209ENST00000492270 SLC25A28Q96A46 364 aa20.25■□□□□ 0.83
UPF3A-209ENST00000492270 PDCD1LG2Q9BQ51 273 aa20.25■□□□□ 0.83
UPF3A-209ENST00000492270 A0A1W2PRD5 423 aa20.24■□□□□ 0.83
UPF3A-209ENST00000492270 A0A1W2PRF3 423 aa20.24■□□□□ 0.83
UPF3A-209ENST00000492270 A0A1W2PRM7 423 aa20.24■□□□□ 0.83
UPF3A-209ENST00000492270 HAX1O00165 279 aa20.24■□□□□ 0.83
UPF3A-209ENST00000492270 KNG1P01042 644 aa20.24■□□□□ 0.83
UPF3A-209ENST00000492270 MELTFP08582 738 aa20.24■□□□□ 0.83
UPF3A-209ENST00000492270 RBP2P50120 134 aa20.24■□□□□ 0.83
UPF3A-209ENST00000492270 ETV1P50549 477 aa20.24■□□□□ 0.83
UPF3A-209ENST00000492270 GTF2A1P52655 376 aaPredicted RBP20.24■□□□□ 0.83
UPF3A-209ENST00000492270 OGFRL1Q5TC84 451 aaPredicted RBP20.24■□□□□ 0.83
UPF3A-209ENST00000492270 TTC23Q5W5X9 447 aa20.24■□□□□ 0.83
UPF3A-209ENST00000492270 Q6YL49 198 aa20.24■□□□□ 0.83
UPF3A-209ENST00000492270 DHRSXQ8N5I4 330 aa20.24■□□□□ 0.83
UPF3A-209ENST00000492270 TNFRSF14Q92956 283 aa20.24■□□□□ 0.83
UPF3A-209ENST00000492270 RFT1Q96AA3 541 aa20.24■□□□□ 0.83
UPF3A-209ENST00000492270 SPACA5Q96QH8 159 aa20.24■□□□□ 0.83
UPF3A-209ENST00000492270 MYCBPQ99417 103 aaPredicted RBP20.24■□□□□ 0.83
UPF3A-209ENST00000492270 JAM3Q9BX67 310 aa20.24■□□□□ 0.83
UPF3A-209ENST00000492270 C8orf4Q9NR00 106 aa20.24■□□□□ 0.83
UPF3A-209ENST00000492270 IL36RNQ9UBH0 155 aa20.24■□□□□ 0.83
UPF3A-209ENST00000492270 TRBV23-1A0A0A0MS06 115 aa20.23■□□□□ 0.83
UPF3A-209ENST00000492270 M0R1W7 72 aa20.23■□□□□ 0.83
UPF3A-209ENST00000492270 SPRY1O43609 319 aaPredicted RBP20.23■□□□□ 0.83
Retrieved 100 of 20,778 RNA–protein pairs in 38.1 ms