RNA–Protein interactions for RNA: ENST00000489562.5

C9orf3-221, Transcript of chromosome 9 open reading frame 3, humanhuman

TSL 2

Gene C9orf3, Length 646 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
C9orf3-221ENST00000489562 IGHV4-39P01824 125 aa11.7□□□□□ -0.54
C9orf3-221ENST00000489562 PMELP40967 661 aa11.7□□□□□ -0.54
C9orf3-221ENST00000489562 DYNC1I2Q13409 638 aaKnown RBP11.7□□□□□ -0.54
C9orf3-221ENST00000489562 DGUOKQ16854 277 aa11.7□□□□□ -0.54
C9orf3-221ENST00000489562 DEFB113Q30KQ7 82 aa11.7□□□□□ -0.54
C9orf3-221ENST00000489562 SMIM21Q3B7S5 101 aa11.7□□□□□ -0.54
C9orf3-221ENST00000489562 HES5Q5TA89 166 aa11.7□□□□□ -0.54
C9orf3-221ENST00000489562 ELP2Q6IA86 826 aa11.7□□□□□ -0.54
C9orf3-221ENST00000489562 FIP1L1Q6UN15 594 aaKnown RBP11.7□□□□□ -0.54
C9orf3-221ENST00000489562 GLIPR1L1Q6UWM5 242 aa11.7□□□□□ -0.54
C9orf3-221ENST00000489562 RNF144BQ7Z419 303 aa11.7□□□□□ -0.54
C9orf3-221ENST00000489562 PEG10Q86TG7 708 aaKnown RBP11.7□□□□□ -0.54
C9orf3-221ENST00000489562 FAM90A1Q86YD7 464 aa11.7□□□□□ -0.54
C9orf3-221ENST00000489562 DYNC2LI1Q8TCX1 351 aa11.7□□□□□ -0.54
C9orf3-221ENST00000489562 AP3S1Q92572 193 aa11.7□□□□□ -0.54
C9orf3-221ENST00000489562 CCL17Q92583 94 aa11.7□□□□□ -0.54
C9orf3-221ENST00000489562 SLAMF9Q96A28 289 aa11.7□□□□□ -0.54
C9orf3-221ENST00000489562 CST11Q9H112 138 aa11.7□□□□□ -0.54
C9orf3-221ENST00000489562 ELL3Q9HB65 397 aaPredicted RBP11.7□□□□□ -0.54
C9orf3-221ENST00000489562 MTCH1Q9NZJ7 389 aa11.7□□□□□ -0.54
C9orf3-221ENST00000489562 CCDC59Q9P031 241 aaKnown RBP11.7□□□□□ -0.54
C9orf3-221ENST00000489562 DAPK2Q9UIK4 370 aa11.7□□□□□ -0.54
C9orf3-221ENST00000489562 ING4Q9UNL4 249 aa11.7□□□□□ -0.54
C9orf3-221ENST00000489562 FBN2P35556 2912 aa11.7□□□□□ -0.54
C9orf3-221ENST00000489562 IGKV1-12A0A0C4DH73 117 aa11.69□□□□□ -0.54
C9orf3-221ENST00000489562 SMIM30A4D0T7 59 aa11.69□□□□□ -0.54
C9orf3-221ENST00000489562 CLDN25C9JDP6 229 aa11.69□□□□□ -0.54
C9orf3-221ENST00000489562 TMEM178BH3BS89 294 aa11.69□□□□□ -0.54
C9orf3-221ENST00000489562 NDUFS7O75251 213 aa11.69□□□□□ -0.54
C9orf3-221ENST00000489562 NXPH2O95156 264 aa11.69□□□□□ -0.54
C9orf3-221ENST00000489562 LHBP01229 141 aa11.69□□□□□ -0.54
C9orf3-221ENST00000489562 IGKV1D-12P01611 117 aa11.69□□□□□ -0.54
C9orf3-221ENST00000489562 CSTBP04080 98 aaKnown RBP11.69□□□□□ -0.54
C9orf3-221ENST00000489562 CALCBP10092 127 aa11.69□□□□□ -0.54
C9orf3-221ENST00000489562 ARSBP15848 533 aa11.69□□□□□ -0.54
C9orf3-221ENST00000489562 GLRA1P23415 457 aa11.69□□□□□ -0.54
C9orf3-221ENST00000489562 TMEM33P57088 247 aa11.69□□□□□ -0.54
C9orf3-221ENST00000489562 DSCR9P59020 149 aa11.69□□□□□ -0.54
C9orf3-221ENST00000489562 ERVK11-1P61568 191 aa11.69□□□□□ -0.54
C9orf3-221ENST00000489562 IDNKQ5T6J7 187 aa11.69□□□□□ -0.54
C9orf3-221ENST00000489562 FOXB2Q5VYV0 432 aa11.69□□□□□ -0.54
C9orf3-221ENST00000489562 OR2W3Q7Z3T1 314 aa11.69□□□□□ -0.54
C9orf3-221ENST00000489562 CDH24Q86UP0 819 aa11.69□□□□□ -0.54
C9orf3-221ENST00000489562 GCSAMQ8N6F7 178 aa11.69□□□□□ -0.54
C9orf3-221ENST00000489562 Q8NFD4 153 aa11.69□□□□□ -0.54
C9orf3-221ENST00000489562 KCNG3Q8TAE7 436 aa11.69□□□□□ -0.54
C9orf3-221ENST00000489562 ACOT12Q8WYK0 555 aa11.69□□□□□ -0.54
C9orf3-221ENST00000489562 YIPF5Q969M3 257 aa11.69□□□□□ -0.54
C9orf3-221ENST00000489562 SLC25A28Q96A46 364 aa11.69□□□□□ -0.54
C9orf3-221ENST00000489562 FAM3DQ96BQ1 224 aa11.69□□□□□ -0.54
C9orf3-221ENST00000489562 MRPS24Q96EL2 167 aaKnown RBP11.69□□□□□ -0.54
C9orf3-221ENST00000489562 TIMD4Q96H15 378 aa11.69□□□□□ -0.54
C9orf3-221ENST00000489562 POM121Q96HA1 1249 aa11.69□□□□□ -0.54
C9orf3-221ENST00000489562 LIN7BQ9HAP6 207 aa11.69□□□□□ -0.54
C9orf3-221ENST00000489562 HES4Q9HCC6 221 aa11.69□□□□□ -0.54
C9orf3-221ENST00000489562 ABRACLQ9P1F3 81 aa11.69□□□□□ -0.54
C9orf3-221ENST00000489562 FBLN5Q9UBX5 448 aa11.69□□□□□ -0.54
C9orf3-221ENST00000489562 NDUFS8O00217 210 aa11.68□□□□□ -0.54
C9orf3-221ENST00000489562 AKR7A2O43488 359 aa11.68□□□□□ -0.54
C9orf3-221ENST00000489562 CYB5R3P00387 301 aaPredicted RBP11.68□□□□□ -0.54
C9orf3-221ENST00000489562 GTF2F2P13984 249 aa11.68□□□□□ -0.54
C9orf3-221ENST00000489562 MUC1P15941 1255 aaPredicted RBP11.68□□□□□ -0.54
C9orf3-221ENST00000489562 ZNF182P17025 639 aaPredicted RBP11.68□□□□□ -0.54
C9orf3-221ENST00000489562 BCL3P20749 454 aa11.68□□□□□ -0.54
C9orf3-221ENST00000489562 COL8A2P25067 703 aa11.68□□□□□ -0.54
C9orf3-221ENST00000489562 PDLIM4P50479 330 aa11.68□□□□□ -0.54
C9orf3-221ENST00000489562 CAV3P56539 151 aa11.68□□□□□ -0.54
C9orf3-221ENST00000489562 FGF12P61328 243 aa11.68□□□□□ -0.54
C9orf3-221ENST00000489562 P2RY14Q15391 338 aa11.68□□□□□ -0.54
C9orf3-221ENST00000489562 FAM189A2Q15884 450 aa11.68□□□□□ -0.54
C9orf3-221ENST00000489562 SLC22A6Q4U2R8 563 aa11.68□□□□□ -0.54
C9orf3-221ENST00000489562 C1QL2Q7Z5L3 287 aa11.68□□□□□ -0.54
C9orf3-221ENST00000489562 FAM58AQ8N1B3 248 aa11.68□□□□□ -0.54
C9orf3-221ENST00000489562 OR51D1Q8NGF3 324 aa11.68□□□□□ -0.54
C9orf3-221ENST00000489562 RAB1CQ92928 201 aa11.68□□□□□ -0.54
C9orf3-221ENST00000489562 PTX4Q96A99 478 aa11.68□□□□□ -0.54
C9orf3-221ENST00000489562 PERPQ96FX8 193 aa11.68□□□□□ -0.54
C9orf3-221ENST00000489562 C1orf147Q96MC9 270 aaPredicted RBP11.68□□□□□ -0.54
C9orf3-221ENST00000489562 NKX3-1Q99801 234 aaPredicted RBP11.68□□□□□ -0.54
C9orf3-221ENST00000489562 TREM2Q9NZC2 230 aa11.68□□□□□ -0.54
C9orf3-221ENST00000489562 DNAJB11Q9UBS4 358 aa11.68□□□□□ -0.54
C9orf3-221ENST00000489562 ETV7Q9Y603 341 aa11.68□□□□□ -0.54
C9orf3-221ENST00000489562 CACNG2Q9Y698 323 aa11.68□□□□□ -0.54
C9orf3-221ENST00000489562 TACC2O95359 2948 aa11.67□□□□□ -0.54
C9orf3-221ENST00000489562 PPIAL4EA0A075B759 164 aa11.67□□□□□ -0.54
C9orf3-221ENST00000489562 TRAV38-1A0A0B4J264 116 aa11.67□□□□□ -0.54
C9orf3-221ENST00000489562 PPIAL4DF5H284 164 aa11.67□□□□□ -0.54
C9orf3-221ENST00000489562 LGALS8O00214 317 aa11.67□□□□□ -0.54
C9orf3-221ENST00000489562 SSX4O60224 188 aa11.67□□□□□ -0.54
C9orf3-221ENST00000489562 LY6HO94772 140 aa11.67□□□□□ -0.54
C9orf3-221ENST00000489562 HTR3BO95264 441 aa11.67□□□□□ -0.54
C9orf3-221ENST00000489562 SFTPBP07988 381 aa11.67□□□□□ -0.54
C9orf3-221ENST00000489562 PPIAL4FP0DN26 164 aa11.67□□□□□ -0.54
C9orf3-221ENST00000489562 VSIG8P0DPA2 414 aa11.67□□□□□ -0.54
C9orf3-221ENST00000489562 SLC2A2P11168 524 aaPredicted RBP11.67□□□□□ -0.54
C9orf3-221ENST00000489562 SERPINA2P20848 420 aa11.67□□□□□ -0.54
C9orf3-221ENST00000489562 GIFP27352 417 aa11.67□□□□□ -0.54
C9orf3-221ENST00000489562 NPBWR2P48146 333 aa11.67□□□□□ -0.54
C9orf3-221ENST00000489562 CLDN12P56749 244 aa11.67□□□□□ -0.54
C9orf3-221ENST00000489562 KCNJ8Q15842 424 aa11.67□□□□□ -0.54
Retrieved 100 of 20,778 RNA–protein pairs in 49.1 ms