RNA–Protein interactions for RNA: ENST00000485450.5

USP4-211, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 2

Gene USP4, Length 3,541 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-211ENST00000485450 AURKAIP1Q9NWT8 199 aaPredicted RBP6.73□□□□□ -1.33
USP4-211ENST00000485450 STEAP1Q9UHE8 339 aa6.73□□□□□ -1.33
USP4-211ENST00000485450 SPTBN4Q9H254 2564 aa6.73□□□□□ -1.33
USP4-211ENST00000485450 KIR2DL5BA0A0G2JN68 375 aa6.73□□□□□ -1.33
USP4-211ENST00000485450 KIR2DL5BA0A0G2JPC4 375 aa6.73□□□□□ -1.33
USP4-211ENST00000485450 C17orf105B2RV13 164 aa6.73□□□□□ -1.33
USP4-211ENST00000485450 HRKO00198 91 aa6.73□□□□□ -1.33
USP4-211ENST00000485450 DCTN6O00399 190 aa6.73□□□□□ -1.33
USP4-211ENST00000485450 AGPAT2O15120 278 aa6.73□□□□□ -1.33
USP4-211ENST00000485450 OR2J2O76002 312 aa6.73□□□□□ -1.33
USP4-211ENST00000485450 TAS2R41P59536 307 aa6.73□□□□□ -1.33
USP4-211ENST00000485450 DUSP5Q16690 384 aa6.73□□□□□ -1.33
USP4-211ENST00000485450 DECR1Q16698 335 aa6.73□□□□□ -1.33
USP4-211ENST00000485450 ZNF311Q5JNZ3 666 aa6.73□□□□□ -1.33
USP4-211ENST00000485450 EIF5AL1Q6IS14 154 aaKnown RBP6.73□□□□□ -1.33
USP4-211ENST00000485450 MFSD12Q6NUT3 480 aa6.73□□□□□ -1.33
USP4-211ENST00000485450 KIR2DL5AQ8N109 375 aa6.73□□□□□ -1.33
USP4-211ENST00000485450 OR56A1Q8NGH5 318 aa6.73□□□□□ -1.33
USP4-211ENST00000485450 DCUN1D4Q92564 292 aa6.73□□□□□ -1.33
USP4-211ENST00000485450 DIO2Q92813 273 aa6.73□□□□□ -1.33
USP4-211ENST00000485450 MUCL1Q96DR8 90 aa6.73□□□□□ -1.33
USP4-211ENST00000485450 SAMD8Q96LT4 415 aa6.73□□□□□ -1.33
USP4-211ENST00000485450 P2RX2Q9UBL9 471 aa6.73□□□□□ -1.33
USP4-211ENST00000485450 ZFP30Q9Y2G7 519 aa6.73□□□□□ -1.33
USP4-211ENST00000485450 ZNF281Q9Y2X9 895 aa6.73□□□□□ -1.33
USP4-211ENST00000485450 CSAG2Q9Y5P2 127 aa6.73□□□□□ -1.33
USP4-211ENST00000485450 SCN3AQ9NY46 2000 aa6.73□□□□□ -1.33
USP4-211ENST00000485450 SMCO3A2RU48 225 aa6.72□□□□□ -1.33
USP4-211ENST00000485450 ZNF264O43296 627 aa6.72□□□□□ -1.33
USP4-211ENST00000485450 CXCL1P09341 107 aa6.72□□□□□ -1.33
USP4-211ENST00000485450 TFPI2P48307 235 aa6.72□□□□□ -1.33
USP4-211ENST00000485450 UCP2P55851 309 aa6.72□□□□□ -1.33
USP4-211ENST00000485450 SCAND1P57086 179 aa6.72□□□□□ -1.33
USP4-211ENST00000485450 SIRPAP78324 504 aa6.72□□□□□ -1.33
USP4-211ENST00000485450 NKX6-1P78426 367 aaPredicted RBP6.72□□□□□ -1.33
USP4-211ENST00000485450 HERPUD1Q15011 391 aa6.72□□□□□ -1.33
USP4-211ENST00000485450 RPL22L1Q6P5R6 122 aaKnown RBP6.72□□□□□ -1.33
USP4-211ENST00000485450 BIVMQ86UB2 503 aa6.72□□□□□ -1.33
USP4-211ENST00000485450 COMMD1Q8N668 190 aa6.72□□□□□ -1.33
USP4-211ENST00000485450 OR5D18Q8NGL1 313 aa6.72□□□□□ -1.33
USP4-211ENST00000485450 PELI1Q96FA3 418 aa6.72□□□□□ -1.33
USP4-211ENST00000485450 RRNAD1Q96FB5 475 aaKnown RBP6.72□□□□□ -1.33
USP4-211ENST00000485450 ABHD17AQ96GS6 310 aa6.72□□□□□ -1.33
USP4-211ENST00000485450 FAM71F1Q96KD3 344 aaPredicted RBP6.72□□□□□ -1.33
USP4-211ENST00000485450 TMEM56Q96MV1 263 aa6.72□□□□□ -1.33
USP4-211ENST00000485450 RNF126Q9BV68 326 aa6.72□□□□□ -1.33
USP4-211ENST00000485450 HAO2Q9NYQ3 351 aa6.72□□□□□ -1.33
USP4-211ENST00000485450 PLA2G2EQ9NZK7 142 aa6.72□□□□□ -1.33
USP4-211ENST00000485450 TMEM56-RWDD3S4R434 201 aa6.72□□□□□ -1.33
USP4-211ENST00000485450 LRRC3CA6NJW4 275 aa6.72□□□□□ -1.33
USP4-211ENST00000485450 SAP18O00422 153 aaKnown RBP6.72□□□□□ -1.33
USP4-211ENST00000485450 PEX12O00623 359 aa6.72□□□□□ -1.33
USP4-211ENST00000485450 LDB3O75112 727 aa6.72□□□□□ -1.33
USP4-211ENST00000485450 IL2RAP01589 272 aa6.72□□□□□ -1.33
USP4-211ENST00000485450 HLA-AP01891 365 aaKnown RBP6.72□□□□□ -1.33
USP4-211ENST00000485450 MRPL3P09001 348 aaKnown RBP6.72□□□□□ -1.33
USP4-211ENST00000485450 ZBTB25P24278 435 aa6.72□□□□□ -1.33
USP4-211ENST00000485450 GPR4P46093 362 aa6.72□□□□□ -1.33
USP4-211ENST00000485450 NPY4RP50391 375 aa6.72□□□□□ -1.33
USP4-211ENST00000485450 ST3GAL3Q11203 375 aa6.72□□□□□ -1.33
USP4-211ENST00000485450 P4HA3Q7Z4N8 544 aa6.72□□□□□ -1.33
USP4-211ENST00000485450 GABRG1Q8N1C3 465 aa6.72□□□□□ -1.33
USP4-211ENST00000485450 SYS1Q8N2H4 156 aa6.72□□□□□ -1.33
USP4-211ENST00000485450 ZNF433Q8N7K0 673 aaPredicted RBP6.72□□□□□ -1.33
USP4-211ENST00000485450 FAM169BQ8N8A8 192 aa6.72□□□□□ -1.33
USP4-211ENST00000485450 ZSCAN4Q8NAM6 433 aaPredicted RBP6.72□□□□□ -1.33
USP4-211ENST00000485450 MITD1Q8WV92 249 aa6.72□□□□□ -1.33
USP4-211ENST00000485450 GPRIN2O60269 458 aa6.72□□□□□ -1.33
USP4-211ENST00000485450 ZNF432O94892 652 aa6.72□□□□□ -1.33
USP4-211ENST00000485450 ZIC2O95409 532 aaPredicted RBP6.72□□□□□ -1.33
USP4-211ENST00000485450 IFNA6P05013 189 aa6.72□□□□□ -1.33
USP4-211ENST00000485450 OR8U9P0C7N5 309 aa6.72□□□□□ -1.33
USP4-211ENST00000485450 EPHA1P21709 976 aa6.72□□□□□ -1.33
USP4-211ENST00000485450 SLC2A5P22732 501 aa6.72□□□□□ -1.33
USP4-211ENST00000485450 ERVFC1-1P60608 527 aa6.72□□□□□ -1.33
USP4-211ENST00000485450 GUSBP1Q15486 140 aa6.72□□□□□ -1.33
USP4-211ENST00000485450 MOGAT2Q3SYC2 334 aa6.72□□□□□ -1.33
USP4-211ENST00000485450 AKR1C8PQ5T2L2 129 aa6.72□□□□□ -1.33
USP4-211ENST00000485450 ZNF585AQ6P3V2 769 aa6.72□□□□□ -1.33
USP4-211ENST00000485450 LYG2Q86SG7 212 aa6.72□□□□□ -1.33
USP4-211ENST00000485450 WDFY1Q8IWB7 410 aa6.72□□□□□ -1.33
USP4-211ENST00000485450 CDRT4Q8N9R6 151 aa6.72□□□□□ -1.33
USP4-211ENST00000485450 OR8U1Q8NH10 309 aa6.72□□□□□ -1.33
USP4-211ENST00000485450 CDS1Q92903 461 aa6.72□□□□□ -1.33
USP4-211ENST00000485450 PLSCR4Q9NRQ2 329 aa6.72□□□□□ -1.33
USP4-211ENST00000485450 RAI1Q7Z5J4 1906 aaPredicted RBP6.72□□□□□ -1.33
USP4-211ENST00000485450 PHF3Q92576 2039 aaKnown RBP6.71□□□□□ -1.33
USP4-211ENST00000485450 TRBV2A0A0J9YWF9 115 aa6.71□□□□□ -1.33
USP4-211ENST00000485450 TRBV11-1A0A0K0K1C0 115 aa6.71□□□□□ -1.33
USP4-211ENST00000485450 ZNF860A6NHJ4 632 aa6.71□□□□□ -1.33
USP4-211ENST00000485450 UMAD1C9J7I0 102 aa6.71□□□□□ -1.33
USP4-211ENST00000485450 BHLHE40O14503 412 aa6.71□□□□□ -1.33
USP4-211ENST00000485450 SMAD9O15198 467 aaKnown RBP6.71□□□□□ -1.33
USP4-211ENST00000485450 SYT7O43581 403 aa6.71□□□□□ -1.33
USP4-211ENST00000485450 GMFGO60234 142 aa6.71□□□□□ -1.33
USP4-211ENST00000485450 LYL1P12980 280 aa6.71□□□□□ -1.33
USP4-211ENST00000485450 SUMO3P55854 103 aaPredicted RBP6.71□□□□□ -1.33
USP4-211ENST00000485450 TAS2R19P59542 299 aa6.71□□□□□ -1.33
USP4-211ENST00000485450 GUCA2AQ02747 115 aa6.71□□□□□ -1.33
USP4-211ENST00000485450 TLE4Q04727 773 aa6.71□□□□□ -1.33
Retrieved 100 of 20,778 RNA–protein pairs in 25.7 ms