RNA–Protein interactions for RNA: ENST00000472880.1

COL9A3-210, Transcript of collagen type IX alpha 3 chain, humanhuman

TSL 3

Gene COL9A3, Length 959 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A3-210ENST00000472880 A0A0G2JK05 382 aa16.06■□□□□ 0.16
COL9A3-210ENST00000472880 PQLC2LA1A4F0 135 aa16.06■□□□□ 0.16
COL9A3-210ENST00000472880 DHRS7CA6NNS2 312 aa16.06■□□□□ 0.16
COL9A3-210ENST00000472880 MAGEB4O15481 346 aaPredicted RBP16.06■□□□□ 0.16
COL9A3-210ENST00000472880 CCL3L1P16619 93 aa16.06■□□□□ 0.16
COL9A3-210ENST00000472880 FASP25445 335 aa16.06■□□□□ 0.16
COL9A3-210ENST00000472880 BMXP51813 675 aa16.06■□□□□ 0.16
COL9A3-210ENST00000472880 ERVFRD-1P60508 538 aa16.06■□□□□ 0.16
COL9A3-210ENST00000472880 NXNL2Q5VZ03 156 aa16.06■□□□□ 0.16
COL9A3-210ENST00000472880 C1QL4Q86Z23 238 aa16.06■□□□□ 0.16
COL9A3-210ENST00000472880 TCEANCQ8N8B7 351 aa16.06■□□□□ 0.16
COL9A3-210ENST00000472880 OR14K1Q8NGZ2 314 aa16.06■□□□□ 0.16
COL9A3-210ENST00000472880 PPP1R35Q8TAP8 253 aa16.06■□□□□ 0.16
COL9A3-210ENST00000472880 TMEM163Q8TC26 289 aa16.06■□□□□ 0.16
COL9A3-210ENST00000472880 AJUBAQ96IF1 538 aa16.06■□□□□ 0.16
COL9A3-210ENST00000472880 PLEKHA1Q9HB21 404 aa16.06■□□□□ 0.16
COL9A3-210ENST00000472880 ADGRL4Q9HBW9 690 aa16.06■□□□□ 0.16
COL9A3-210ENST00000472880 CLN6Q9NWW5 311 aa16.06■□□□□ 0.16
COL9A3-210ENST00000472880 SNX5Q9Y5X3 404 aa16.06■□□□□ 0.16
COL9A3-210ENST00000472880 TK1P04183 234 aa16.05■□□□□ 0.16
COL9A3-210ENST00000472880 MPZP25189 248 aa16.05■□□□□ 0.16
COL9A3-210ENST00000472880 PAX6P26367 422 aa16.05■□□□□ 0.16
COL9A3-210ENST00000472880 KIR2DS4P43632 304 aa16.05■□□□□ 0.16
COL9A3-210ENST00000472880 EFNB2P52799 333 aa16.05■□□□□ 0.16
COL9A3-210ENST00000472880 SLX4IPQ5VYV7 408 aa16.05■□□□□ 0.16
COL9A3-210ENST00000472880 ZNF782Q6ZMW2 699 aaPredicted RBP16.05■□□□□ 0.16
COL9A3-210ENST00000472880 LIAT1Q6ZQX7 453 aa16.05■□□□□ 0.16
COL9A3-210ENST00000472880 GID4Q8IVV7 300 aa16.05■□□□□ 0.16
COL9A3-210ENST00000472880 NPFFR1Q9GZQ6 430 aa16.05■□□□□ 0.16
COL9A3-210ENST00000472880 HES4Q9HCC6 221 aa16.05■□□□□ 0.16
COL9A3-210ENST00000472880 TGP01266 2768 aa16.05■□□□□ 0.16
COL9A3-210ENST00000472880 A0A1B0GTI1 187 aa16.04■□□□□ 0.16
COL9A3-210ENST00000472880 A6NIN4 97 aa16.04■□□□□ 0.16
COL9A3-210ENST00000472880 PIPP12273 146 aaPredicted RBP16.04■□□□□ 0.16
COL9A3-210ENST00000472880 FCGR1AP12314 374 aa16.04■□□□□ 0.16
COL9A3-210ENST00000472880 ZNF273Q14593 569 aa16.04■□□□□ 0.16
COL9A3-210ENST00000472880 AADACL4Q5VUY2 407 aa16.04■□□□□ 0.16
COL9A3-210ENST00000472880 C11orf42Q8N5U0 333 aa16.04■□□□□ 0.16
COL9A3-210ENST00000472880 KLHDC1Q8N7A1 406 aa16.04■□□□□ 0.16
COL9A3-210ENST00000472880 DTX3Q8N9I9 347 aa16.04■□□□□ 0.16
COL9A3-210ENST00000472880 ASCC1Q8N9N2 400 aaKnown RBP16.04■□□□□ 0.16
COL9A3-210ENST00000472880 TRMT10AQ8TBZ6 339 aaKnown RBP16.04■□□□□ 0.16
COL9A3-210ENST00000472880 PKIBQ9C010 78 aa16.04■□□□□ 0.16
COL9A3-210ENST00000472880 MRM2Q9UI43 246 aaKnown RBP16.04■□□□□ 0.16
COL9A3-210ENST00000472880 FAM230AA0A1W2PPH8 454 aa16.03■□□□□ 0.16
COL9A3-210ENST00000472880 ZAR1LA6NP61 321 aa16.03■□□□□ 0.16
COL9A3-210ENST00000472880 G3V2T6 193 aa16.03■□□□□ 0.16
COL9A3-210ENST00000472880 MITFO75030 526 aaPredicted RBP16.03■□□□□ 0.16
COL9A3-210ENST00000472880 RPP14O95059 124 aaKnown RBP16.03■□□□□ 0.16
COL9A3-210ENST00000472880 KRT8P05787 483 aa16.03■□□□□ 0.16
COL9A3-210ENST00000472880 IL24Q13007 206 aa16.03■□□□□ 0.16
COL9A3-210ENST00000472880 C12orf73Q69YU5 71 aa16.03■□□□□ 0.16
COL9A3-210ENST00000472880 CRIP3Q6Q6R5 217 aa16.03■□□□□ 0.16
COL9A3-210ENST00000472880 AMIGO2Q86SJ2 522 aa16.03■□□□□ 0.16
COL9A3-210ENST00000472880 ANGPTL5Q86XS5 388 aa16.03■□□□□ 0.16
COL9A3-210ENST00000472880 CALHM1Q8IU99 346 aa16.03■□□□□ 0.16
COL9A3-210ENST00000472880 YIPF7Q8N8F6 280 aa16.03■□□□□ 0.16
COL9A3-210ENST00000472880 IL4I1Q96RQ9 567 aa16.03■□□□□ 0.16
COL9A3-210ENST00000472880 ENOPH1Q9UHY7 261 aa16.03■□□□□ 0.16
COL9A3-210ENST00000472880 FOXJ3Q9UPW0 622 aa16.03■□□□□ 0.16
COL9A3-210ENST00000472880 SLC7A11Q9UPY5 501 aa16.03■□□□□ 0.16
COL9A3-210ENST00000472880 SLC22A13Q9Y226 551 aa16.03■□□□□ 0.16
COL9A3-210ENST00000472880 EBAG9O00559 213 aa16.02■□□□□ 0.16
COL9A3-210ENST00000472880 CHST1O43916 411 aa16.02■□□□□ 0.16
COL9A3-210ENST00000472880 CCL1P22362 96 aa16.02■□□□□ 0.16
COL9A3-210ENST00000472880 EPHA2P29317 976 aa16.02■□□□□ 0.16
COL9A3-210ENST00000472880 COL10A1Q03692 680 aa16.02■□□□□ 0.16
COL9A3-210ENST00000472880 ODF4Q2M2E3 257 aa16.02■□□□□ 0.16
COL9A3-210ENST00000472880 Q6ZSR3 168 aa16.02■□□□□ 0.16
COL9A3-210ENST00000472880 ZDHHC13Q8IUH4 622 aa16.02■□□□□ 0.16
COL9A3-210ENST00000472880 C11orf44Q8N8P7 122 aa16.02■□□□□ 0.16
COL9A3-210ENST00000472880 FOXRED1Q96CU9 486 aaPredicted RBP16.02■□□□□ 0.16
COL9A3-210ENST00000472880 TBX5Q99593 518 aa16.02■□□□□ 0.16
COL9A3-210ENST00000472880 NKX3-1Q99801 234 aaPredicted RBP16.02■□□□□ 0.16
COL9A3-210ENST00000472880 GABARAPL1Q9H0R8 117 aa16.02■□□□□ 0.16
COL9A3-210ENST00000472880 K7N7A8 449 aa16.01■□□□□ 0.15
COL9A3-210ENST00000472880 SYT7O43581 403 aa16.01■□□□□ 0.15
COL9A3-210ENST00000472880 VSIG10L2P0DP72 767 aa16.01■□□□□ 0.15
COL9A3-210ENST00000472880 EDDM3BP56851 147 aa16.01■□□□□ 0.15
COL9A3-210ENST00000472880 ERVK11-1P61568 191 aa16.01■□□□□ 0.15
COL9A3-210ENST00000472880 EFNB1P98172 346 aa16.01■□□□□ 0.15
COL9A3-210ENST00000472880 PLA1AQ53H76 456 aa16.01■□□□□ 0.15
COL9A3-210ENST00000472880 SSX6Q7RTT6 188 aa16.01■□□□□ 0.15
COL9A3-210ENST00000472880 LHFPL4Q7Z7J7 247 aa16.01■□□□□ 0.15
COL9A3-210ENST00000472880 OR13D1Q8NGV5 346 aa16.01■□□□□ 0.15
COL9A3-210ENST00000472880 CEP19Q96LK0 163 aa16.01■□□□□ 0.15
COL9A3-210ENST00000472880 ABCB10Q9NRK6 738 aa16.01■□□□□ 0.15
COL9A3-210ENST00000472880 WARS2Q9UGM6 360 aaKnown RBP16.01■□□□□ 0.15
COL9A3-210ENST00000472880 TBL2Q9Y4P3 447 aaKnown RBP16.01■□□□□ 0.15
COL9A3-210ENST00000472880 PRKDCP78527 4128 aaKnown RBP16■□□□□ 0.15
COL9A3-210ENST00000472880 C17orf98A8MV24 154 aa16■□□□□ 0.15
COL9A3-210ENST00000472880 H3BSH0 61 aa16■□□□□ 0.15
COL9A3-210ENST00000472880 GATBO75879 557 aaKnown RBP16■□□□□ 0.15
COL9A3-210ENST00000472880 ARG1P05089 322 aa16■□□□□ 0.15
COL9A3-210ENST00000472880 CHRM2P08172 466 aa16■□□□□ 0.15
COL9A3-210ENST00000472880 DLX6P56179 175 aa16■□□□□ 0.15
COL9A3-210ENST00000472880 KPNB1Q14974 876 aaKnown RBP16■□□□□ 0.15
COL9A3-210ENST00000472880 KDM4DQ6B0I6 523 aa16■□□□□ 0.15
COL9A3-210ENST00000472880 GDPD3Q7L5L3 318 aa16■□□□□ 0.15
COL9A3-210ENST00000472880 CATSPERDQ86XM0 798 aa16■□□□□ 0.15
Retrieved 100 of 20,778 RNA–protein pairs in 33.7 ms