RNA–Protein interactions for RNA: ENST00000469550.6

HDAC3-205, Transcript of histone deacetylase 3, humanhuman

TSL 1 (best)

Gene HDAC3, Length 1,952 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC3-205ENST00000469550 TOLLIPQ9H0E2 274 aa8.41□□□□□ -1.06
HDAC3-205ENST00000469550 NXF5Q9H1B4 397 aaKnown RBP8.41□□□□□ -1.06
HDAC3-205ENST00000469550 OPA3Q9H6K4 179 aa8.41□□□□□ -1.06
HDAC3-205ENST00000469550 PTGES2Q9H7Z7 377 aa8.41□□□□□ -1.06
HDAC3-205ENST00000469550 FBXL17Q9UF56 701 aa8.41□□□□□ -1.06
HDAC3-205ENST00000469550 B3GALT5Q9Y2C3 310 aa8.41□□□□□ -1.06
HDAC3-205ENST00000469550 AMDHD2Q9Y303 409 aa8.41□□□□□ -1.06
HDAC3-205ENST00000469550 TMED7-TICAM2A0A0A6YYA0 188 aa8.4□□□□□ -1.06
HDAC3-205ENST00000469550 C17orf105B2RV13 164 aa8.4□□□□□ -1.06
HDAC3-205ENST00000469550 ALG1L2C9J202 215 aa8.4□□□□□ -1.06
HDAC3-205ENST00000469550 HCRTR2O43614 444 aa8.4□□□□□ -1.06
HDAC3-205ENST00000469550 CDC14BO60729 498 aa8.4□□□□□ -1.06
HDAC3-205ENST00000469550 CTSBP07858 339 aa8.4□□□□□ -1.06
HDAC3-205ENST00000469550 FOLR1P15328 257 aa8.4□□□□□ -1.06
HDAC3-205ENST00000469550 AKR1C3P42330 323 aa8.4□□□□□ -1.06
HDAC3-205ENST00000469550 SULT1A1P50225 295 aa8.4□□□□□ -1.06
HDAC3-205ENST00000469550 TMEM50BP56557 158 aa8.4□□□□□ -1.06
HDAC3-205ENST00000469550 S100A10P60903 97 aa8.4□□□□□ -1.06
HDAC3-205ENST00000469550 PPP1CAP62136 330 aa8.4□□□□□ -1.06
HDAC3-205ENST00000469550 HSD11B2P80365 405 aa8.4□□□□□ -1.06
HDAC3-205ENST00000469550 DNLZQ5SXM8 178 aa8.4□□□□□ -1.06
HDAC3-205ENST00000469550 ZNF101Q8IZC7 436 aa8.4□□□□□ -1.06
HDAC3-205ENST00000469550 PNLDC1Q8NA58 520 aaKnown RBP8.4□□□□□ -1.06
HDAC3-205ENST00000469550 YPEL4Q96NS1 127 aa8.4□□□□□ -1.06
HDAC3-205ENST00000469550 NICN1Q9BSH3 213 aa8.4□□□□□ -1.06
HDAC3-205ENST00000469550 MOB1AQ9H8S9 216 aa8.4□□□□□ -1.06
HDAC3-205ENST00000469550 SPACA1Q9HBV2 294 aa8.4□□□□□ -1.06
HDAC3-205ENST00000469550 GSKIPQ9P0R6 139 aa8.4□□□□□ -1.06
HDAC3-205ENST00000469550 LUZP4Q9P127 313 aa8.4□□□□□ -1.06
HDAC3-205ENST00000469550 STRAPQ9Y3F4 350 aaKnown RBP8.4□□□□□ -1.06
HDAC3-205ENST00000469550 LRRK2Q5S007 2527 aa8.39□□□□□ -1.07
HDAC3-205ENST00000469550 CPAMD8Q8IZJ3 1885 aa8.39□□□□□ -1.07
HDAC3-205ENST00000469550 M0R036 132 aa8.39□□□□□ -1.07
HDAC3-205ENST00000469550 CA11O75493 328 aa8.39□□□□□ -1.07
HDAC3-205ENST00000469550 AHSA1O95433 338 aa8.39□□□□□ -1.07
HDAC3-205ENST00000469550 AMY2BP19961 511 aa8.39□□□□□ -1.07
HDAC3-205ENST00000469550 OR3A2P47893 321 aa8.39□□□□□ -1.07
HDAC3-205ENST00000469550 TMEM33P57088 247 aa8.39□□□□□ -1.07
HDAC3-205ENST00000469550 ZNF239Q16600 458 aaKnown RBP8.39□□□□□ -1.07
HDAC3-205ENST00000469550 IAH1Q2TAA2 248 aaPredicted RBP8.39□□□□□ -1.07
HDAC3-205ENST00000469550 AKIRIN2Q53H80 203 aa8.39□□□□□ -1.07
HDAC3-205ENST00000469550 OR2B11Q5JQS5 317 aa8.39□□□□□ -1.07
HDAC3-205ENST00000469550 OR2A2Q6IF42 318 aa8.39□□□□□ -1.07
HDAC3-205ENST00000469550 ADAM5Q6NVV9 412 aa8.39□□□□□ -1.07
HDAC3-205ENST00000469550 ARMC6Q6NXE6 501 aa8.39□□□□□ -1.07
HDAC3-205ENST00000469550 KLHL24Q6TFL4 600 aa8.39□□□□□ -1.07
HDAC3-205ENST00000469550 GLIPR1L1Q6UWM5 242 aa8.39□□□□□ -1.07
HDAC3-205ENST00000469550 GRINAQ7Z429 371 aa8.39□□□□□ -1.07
HDAC3-205ENST00000469550 FAM89BQ8N5H3 189 aa8.39□□□□□ -1.07
HDAC3-205ENST00000469550 C19orf47Q8N9M1 422 aaKnown RBP8.39□□□□□ -1.07
HDAC3-205ENST00000469550 LFNGQ8NES3 379 aa8.39□□□□□ -1.07
HDAC3-205ENST00000469550 PTPMT1Q8WUK0 201 aaPredicted RBP8.39□□□□□ -1.07
HDAC3-205ENST00000469550 ASB10Q8WXI3 467 aa8.39□□□□□ -1.07
HDAC3-205ENST00000469550 ADIPOR1Q96A54 375 aa8.39□□□□□ -1.07
HDAC3-205ENST00000469550 ADOQ96SZ5 270 aa8.39□□□□□ -1.07
HDAC3-205ENST00000469550 S100A13Q99584 98 aa8.39□□□□□ -1.07
HDAC3-205ENST00000469550 GINS3Q9BRX5 216 aa8.39□□□□□ -1.07
HDAC3-205ENST00000469550 URM1Q9BTM9 101 aaKnown RBP8.39□□□□□ -1.07
HDAC3-205ENST00000469550 PBDC1Q9BVG4 233 aa8.39□□□□□ -1.07
HDAC3-205ENST00000469550 RTN4RQ9BZR6 473 aa8.39□□□□□ -1.07
HDAC3-205ENST00000469550 PBOV1Q9GZY1 135 aa8.39□□□□□ -1.07
HDAC3-205ENST00000469550 SLC35B3Q9H1N7 401 aa8.39□□□□□ -1.07
HDAC3-205ENST00000469550 FGF21Q9NSA1 209 aa8.39□□□□□ -1.07
HDAC3-205ENST00000469550 MRPS28Q9Y2Q9 187 aaKnown RBP8.39□□□□□ -1.07
HDAC3-205ENST00000469550 CACNA1CQ13936 2221 aa8.39□□□□□ -1.07
HDAC3-205ENST00000469550 BORCS7-ASMTA0A0B4J1R7 106 aa8.39□□□□□ -1.07
HDAC3-205ENST00000469550 hCG_1809904A0A1W2PP81 198 aa8.39□□□□□ -1.07
HDAC3-205ENST00000469550 A0A1W2PR64 198 aa8.39□□□□□ -1.07
HDAC3-205ENST00000469550 A0A1W2PRV1 198 aa8.39□□□□□ -1.07
HDAC3-205ENST00000469550 UMAD1C9J7I0 102 aa8.39□□□□□ -1.07
HDAC3-205ENST00000469550 SOCS1O15524 211 aa8.39□□□□□ -1.07
HDAC3-205ENST00000469550 CEACAM4O75871 244 aa8.39□□□□□ -1.07
HDAC3-205ENST00000469550 IFNA2P01563 188 aa8.39□□□□□ -1.07
HDAC3-205ENST00000469550 SFTPBP07988 381 aa8.39□□□□□ -1.07
HDAC3-205ENST00000469550 SLC2A1P11166 492 aa8.39□□□□□ -1.07
HDAC3-205ENST00000469550 GLRA1P23415 457 aa8.39□□□□□ -1.07
HDAC3-205ENST00000469550 RBMXP38159 391 aaKnown RBP8.39□□□□□ -1.07
HDAC3-205ENST00000469550 CDX1P47902 265 aaPredicted RBP8.39□□□□□ -1.07
HDAC3-205ENST00000469550 DAP3P51398 398 aaKnown RBP8.39□□□□□ -1.07
HDAC3-205ENST00000469550 ARL6IP1Q15041 203 aa8.39□□□□□ -1.07
HDAC3-205ENST00000469550 PPA1Q15181 289 aa8.39□□□□□ -1.07
HDAC3-205ENST00000469550 DEFB110Q30KQ9 67 aa8.39□□□□□ -1.07
HDAC3-205ENST00000469550 MIDNQ504T8 468 aa8.39□□□□□ -1.07
HDAC3-205ENST00000469550 HEPN1Q6WQI6 88 aa8.39□□□□□ -1.07
HDAC3-205ENST00000469550 FAM24BQ8N5W8 94 aa8.39□□□□□ -1.07
HDAC3-205ENST00000469550 TMEM104Q8NE00 496 aa8.39□□□□□ -1.07
HDAC3-205ENST00000469550 OR13C9Q8NGT0 318 aa8.39□□□□□ -1.07
HDAC3-205ENST00000469550 FNDC9Q8TBE3 224 aa8.39□□□□□ -1.07
HDAC3-205ENST00000469550 ISOC2Q96AB3 205 aa8.39□□□□□ -1.07
HDAC3-205ENST00000469550 ZNF501Q96CX3 271 aaPredicted RBP8.39□□□□□ -1.07
HDAC3-205ENST00000469550 FBXO17Q96EF6 278 aa8.39□□□□□ -1.07
HDAC3-205ENST00000469550 KCNK17Q96T54 332 aa8.39□□□□□ -1.07
HDAC3-205ENST00000469550 TMEM59Q9BXS4 323 aa8.39□□□□□ -1.07
HDAC3-205ENST00000469550 KCNJ16Q9NPI9 418 aa8.39□□□□□ -1.07
HDAC3-205ENST00000469550 CENPMQ9NSP4 180 aa8.39□□□□□ -1.07
HDAC3-205ENST00000469550 PRR13Q9NZ81 148 aa8.39□□□□□ -1.07
HDAC3-205ENST00000469550 C14orf166Q9Y224 244 aaKnown RBP8.39□□□□□ -1.07
HDAC3-205ENST00000469550 TNRC6AQ8NDV7 1962 aaKnown RBP8.39□□□□□ -1.07
HDAC3-205ENST00000469550 FTCDNL1E5RQL4 147 aa8.38□□□□□ -1.07
HDAC3-205ENST00000469550 H0YIG0 161 aa8.38□□□□□ -1.07
Retrieved 100 of 20,778 RNA–protein pairs in 31.1 ms