RNA–Protein interactions for RNA: ENST00000469511.1

PTPN4-209, Transcript of protein tyrosine phosphatase, non-receptor type 4, human

TSL 3

Gene PTPN4, Length 476 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
PTPN4-209	ENST00000469511	SLC22A2	O15244	555 aa		4.11	□□□□□ -1.75
PTPN4-209	ENST00000469511	MTRF1	O75570	445 aa	Known RBP	4.11	□□□□□ -1.75
PTPN4-209	ENST00000469511	HLA-DQA2	P01906	255 aa		4.11	□□□□□ -1.75
PTPN4-209	ENST00000469511	ALDOB	P05062	364 aa		4.11	□□□□□ -1.75
PTPN4-209	ENST00000469511	IGHV1-8	P0DP01	117 aa		4.11	□□□□□ -1.75
PTPN4-209	ENST00000469511	TROVE2	P10155	538 aa	Known RBP eCLIP	4.11	□□□□□ -1.75
PTPN4-209	ENST00000469511	SPN	P16150	400 aa		4.11	□□□□□ -1.75
PTPN4-209	ENST00000469511	HOXA5	P20719	270 aa		4.11	□□□□□ -1.75
PTPN4-209	ENST00000469511	MYF6	P23409	242 aa		4.11	□□□□□ -1.75
PTPN4-209	ENST00000469511	PRDX2	P32119	198 aa		4.11	□□□□□ -1.75
PTPN4-209	ENST00000469511	OMP	P47874	163 aa		4.11	□□□□□ -1.75
PTPN4-209	ENST00000469511	VEGFC	P49767	419 aa		4.11	□□□□□ -1.75
PTPN4-209	ENST00000469511	GPM6A	P51674	278 aa		4.11	□□□□□ -1.75
PTPN4-209	ENST00000469511	OR12D2	P58182	307 aa		4.11	□□□□□ -1.75
PTPN4-209	ENST00000469511	ACTA2	P62736	377 aa		4.11	□□□□□ -1.75
PTPN4-209	ENST00000469511	VSNL1	P62760	191 aa		4.11	□□□□□ -1.75
PTPN4-209	ENST00000469511	ACTG2	P63267	376 aa		4.11	□□□□□ -1.75
PTPN4-209	ENST00000469511	ACTC1	P68032	377 aa		4.11	□□□□□ -1.75
PTPN4-209	ENST00000469511	ACTA1	P68133	377 aa		4.11	□□□□□ -1.75
PTPN4-209	ENST00000469511	SPIB	Q01892	262 aa		4.11	□□□□□ -1.75
PTPN4-209	ENST00000469511	KRT72	Q14CN4	511 aa		4.11	□□□□□ -1.75
PTPN4-209	ENST00000469511	TRAM2	Q15035	370 aa		4.11	□□□□□ -1.75
PTPN4-209	ENST00000469511	KRT71	Q3SY84	523 aa		4.11	□□□□□ -1.75
PTPN4-209	ENST00000469511	ANKDD1A	Q495B1	522 aa		4.11	□□□□□ -1.75
PTPN4-209	ENST00000469511	LRRC23	Q53EV4	343 aa	Predicted RBP	4.11	□□□□□ -1.75
PTPN4-209	ENST00000469511	FAM76B	Q5HYJ3	339 aa		4.11	□□□□□ -1.75
PTPN4-209	ENST00000469511	GPR139	Q6DWJ6	353 aa		4.11	□□□□□ -1.75
PTPN4-209	ENST00000469511	NANOGP8	Q6NSW7	305 aa		4.11	□□□□□ -1.75
PTPN4-209	ENST00000469511	DRAM2	Q6UX65	266 aa		4.11	□□□□□ -1.75
PTPN4-209	ENST00000469511	ZNF730	Q6ZMV8	503 aa		4.11	□□□□□ -1.75
PTPN4-209	ENST00000469511	ACP7	Q6ZNF0	438 aa		4.11	□□□□□ -1.75
PTPN4-209	ENST00000469511	KCTD8	Q6ZWB6	473 aa		4.11	□□□□□ -1.75
PTPN4-209	ENST00000469511	FAM57B	Q71RH2	274 aa		4.11	□□□□□ -1.75
PTPN4-209	ENST00000469511	ZDHHC21	Q8IVQ6	265 aa		4.11	□□□□□ -1.75
PTPN4-209	ENST00000469511	OFCC1	Q8IZS5	231 aa		4.11	□□□□□ -1.75
PTPN4-209	ENST00000469511	RPP25L	Q8N5L8	163 aa	Known RBP	4.11	□□□□□ -1.75
PTPN4-209	ENST00000469511	CYB561A3	Q8NBI2	242 aa		4.11	□□□□□ -1.75
PTPN4-209	ENST00000469511	OR4P4	Q8NGL7	312 aa		4.11	□□□□□ -1.75
PTPN4-209	ENST00000469511	NDNF	Q8TB73	568 aa		4.11	□□□□□ -1.75
PTPN4-209	ENST00000469511	SPTSSA	Q969W0	71 aa		4.11	□□□□□ -1.75
PTPN4-209	ENST00000469511	ISOC1	Q96CN7	298 aa		4.11	□□□□□ -1.75
PTPN4-209	ENST00000469511	REEP6	Q96HR9	211 aa		4.11	□□□□□ -1.75
PTPN4-209	ENST00000469511	RBM14	Q96PK6	669 aa	Known RBP	4.11	□□□□□ -1.75
PTPN4-209	ENST00000469511	OR8B4	Q96RC9	309 aa		4.11	□□□□□ -1.75
PTPN4-209	ENST00000469511	GPX7	Q96SL4	187 aa	Predicted RBP	4.11	□□□□□ -1.75
PTPN4-209	ENST00000469511	AMELY	Q99218	206 aa		4.11	□□□□□ -1.75
PTPN4-209	ENST00000469511	MNT	Q99583	582 aa		4.11	□□□□□ -1.75
PTPN4-209	ENST00000469511	TMEM109	Q9BVC6	243 aa		4.11	□□□□□ -1.75
PTPN4-209	ENST00000469511	FNDC11	Q9BVV2	318 aa		4.11	□□□□□ -1.75
PTPN4-209	ENST00000469511	POLR2J2	Q9GZM3	115 aa	Known RBP	4.11	□□□□□ -1.75
PTPN4-209	ENST00000469511	POLR2J3	Q9H1A7	115 aa	Known RBP	4.11	□□□□□ -1.75
PTPN4-209	ENST00000469511	OR51I2	Q9H344	312 aa		4.11	□□□□□ -1.75
PTPN4-209	ENST00000469511	RETN	Q9HD89	108 aa		4.11	□□□□□ -1.75
PTPN4-209	ENST00000469511	USE1	Q9NZ43	259 aa		4.11	□□□□□ -1.75
PTPN4-209	ENST00000469511	DNAJC27	Q9NZQ0	273 aa		4.11	□□□□□ -1.75
PTPN4-209	ENST00000469511	HHLA2	Q9UM44	414 aa		4.11	□□□□□ -1.75
PTPN4-209	ENST00000469511	CORO2B	Q9UQ03	480 aa		4.11	□□□□□ -1.75
PTPN4-209	ENST00000469511	IGHV2-26	A0A0B4J1V2	119 aa		4.1	□□□□□ -1.75
PTPN4-209	ENST00000469511	TRBV4-1	A0A0J9YWV2	114 aa		4.1	□□□□□ -1.75
PTPN4-209	ENST00000469511	KRTAP23-1	A1A580	65 aa		4.1	□□□□□ -1.75
PTPN4-209	ENST00000469511	ZNF785	A8K8V0	405 aa		4.1	□□□□□ -1.75
PTPN4-209	ENST00000469511		F8VVB4	439 aa		4.1	□□□□□ -1.75
PTPN4-209	ENST00000469511		F8VWA3	439 aa		4.1	□□□□□ -1.75
PTPN4-209	ENST00000469511	FXYD1	O00168	92 aa		4.1	□□□□□ -1.75
PTPN4-209	ENST00000469511	RGS16	O15492	202 aa	Predicted RBP	4.1	□□□□□ -1.75
PTPN4-209	ENST00000469511	TIPRL	O75663	272 aa		4.1	□□□□□ -1.75
PTPN4-209	ENST00000469511	JTB	O76095	146 aa		4.1	□□□□□ -1.75
PTPN4-209	ENST00000469511	OR2F2	O95006	317 aa		4.1	□□□□□ -1.75
PTPN4-209	ENST00000469511	DIRAS1	O95057	198 aa		4.1	□□□□□ -1.75
PTPN4-209	ENST00000469511	TK1	P04183	234 aa		4.1	□□□□□ -1.75
PTPN4-209	ENST00000469511	GYPB	P06028	91 aa		4.1	□□□□□ -1.75
PTPN4-209	ENST00000469511	ANXA2	P07355	339 aa	Known RBP	4.1	□□□□□ -1.75
PTPN4-209	ENST00000469511	PGA5	P0DJD9	388 aa		4.1	□□□□□ -1.75
PTPN4-209	ENST00000469511	ZNF728	P0DKX0	622 aa		4.1	□□□□□ -1.75
PTPN4-209	ENST00000469511	PAICS	P22234	425 aa	Known RBP	4.1	□□□□□ -1.75
PTPN4-209	ENST00000469511	CRABP1	P29762	137 aa		4.1	□□□□□ -1.75
PTPN4-209	ENST00000469511	KDELR2	P33947	212 aa		4.1	□□□□□ -1.75
PTPN4-209	ENST00000469511	DDOST	P39656	456 aa		4.1	□□□□□ -1.75
PTPN4-209	ENST00000469511	CX3CR1	P49238	355 aa		4.1	□□□□□ -1.75
PTPN4-209	ENST00000469511	ZNF121	P58317	390 aa	Predicted RBP	4.1	□□□□□ -1.75
PTPN4-209	ENST00000469511	STX1B	P61266	288 aa		4.1	□□□□□ -1.75
PTPN4-209	ENST00000469511	NHLH2	Q02577	135 aa		4.1	□□□□□ -1.75
PTPN4-209	ENST00000469511	MZT1	Q08AG7	82 aa		4.1	□□□□□ -1.75
PTPN4-209	ENST00000469511	ICAM4	Q14773	271 aa		4.1	□□□□□ -1.75
PTPN4-209	ENST00000469511	SRSF7	Q16629	238 aa	Known RBP eCLIP	4.1	□□□□□ -1.75
PTPN4-209	ENST00000469511	TIGD6	Q17RP2	521 aa		4.1	□□□□□ -1.75
PTPN4-209	ENST00000469511	CEP78	Q5JTW2	689 aa		4.1	□□□□□ -1.75
PTPN4-209	ENST00000469511	LCN8	Q6JVE9	175 aa		4.1	□□□□□ -1.75
PTPN4-209	ENST00000469511	ADCK1	Q86TW2	530 aa		4.1	□□□□□ -1.75
PTPN4-209	ENST00000469511	HAPLN4	Q86UW8	402 aa		4.1	□□□□□ -1.75
PTPN4-209	ENST00000469511	RNF113B	Q8IZP6	322 aa	Known RBP	4.1	□□□□□ -1.75
PTPN4-209	ENST00000469511	KIRREL3	Q8IZU9	778 aa		4.1	□□□□□ -1.75
PTPN4-209	ENST00000469511	OR2C3	Q8N628	320 aa		4.1	□□□□□ -1.75
PTPN4-209	ENST00000469511	EIF1AD	Q8N9N8	165 aa	Known RBP	4.1	□□□□□ -1.75
PTPN4-209	ENST00000469511	OR13D1	Q8NGV5	346 aa		4.1	□□□□□ -1.75
PTPN4-209	ENST00000469511	AQP3	Q92482	292 aa		4.1	□□□□□ -1.75
PTPN4-209	ENST00000469511	STMN2	Q93045	179 aa		4.1	□□□□□ -1.75
PTPN4-209	ENST00000469511	SLAMF6	Q96DU3	332 aa		4.1	□□□□□ -1.75
PTPN4-209	ENST00000469511	RSRC1	Q96IZ7	334 aa	Known RBP	4.1	□□□□□ -1.75
PTPN4-209	ENST00000469511	NEU1	Q99519	415 aa		4.1	□□□□□ -1.75

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