RNA–Protein interactions for RNA: ENST00000463837.5

CCDC88B-204, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 2

Gene CCDC88B, Length 5,235 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-204ENST00000463837 CTLA4P16410 223 aa16.92■□□□□ 0.3
CCDC88B-204ENST00000463837 HIST1H3AP68431 136 aa16.92■□□□□ 0.3
CCDC88B-204ENST00000463837 CLEC18BQ6UXF7 455 aa16.92■□□□□ 0.3
CCDC88B-204ENST00000463837 PARP11Q9NR21 331 aa16.92■□□□□ 0.3
CCDC88B-204ENST00000463837 OR2A2Q6IF42 318 aa16.91■□□□□ 0.3
CCDC88B-204ENST00000463837 C10orf35Q96D05 121 aa16.91■□□□□ 0.3
CCDC88B-204ENST00000463837 MOGAT1Q96PD6 335 aa16.91■□□□□ 0.3
CCDC88B-204ENST00000463837 S1PR3Q99500 378 aa16.91■□□□□ 0.3
CCDC88B-204ENST00000463837 NPAS1Q99742 590 aa16.91■□□□□ 0.3
CCDC88B-204ENST00000463837 KCNK15Q9H427 330 aa16.91■□□□□ 0.3
CCDC88B-204ENST00000463837 LMO7DNF2Z398 122 aa16.91■□□□□ 0.3
CCDC88B-204ENST00000463837 ADAM20O43506 726 aa16.91■□□□□ 0.3
CCDC88B-204ENST00000463837 OR3A4PP47883 348 aa16.91■□□□□ 0.3
CCDC88B-204ENST00000463837 PDCD6O75340 191 aa16.91■□□□□ 0.3
CCDC88B-204ENST00000463837 HLA-DQB1P01920 261 aa16.91■□□□□ 0.3
CCDC88B-204ENST00000463837 IFITM2Q01629 132 aa16.91■□□□□ 0.3
CCDC88B-204ENST00000463837 LRRC61Q9BV99 259 aa16.91■□□□□ 0.3
CCDC88B-204ENST00000463837 TNFSF18Q9UNG2 199 aa16.91■□□□□ 0.3
CCDC88B-204ENST00000463837 MASP2O00187 686 aa16.91■□□□□ 0.3
CCDC88B-204ENST00000463837 LIMK1P53667 647 aa16.91■□□□□ 0.3
CCDC88B-204ENST00000463837 NAAAQ02083 359 aa16.91■□□□□ 0.3
CCDC88B-204ENST00000463837 CBY3A6NI87 242 aa16.9■□□□□ 0.3
CCDC88B-204ENST00000463837 CT62P0C5K7 136 aa16.9■□□□□ 0.3
CCDC88B-204ENST00000463837 MESTQ5EB52 335 aa16.9■□□□□ 0.3
CCDC88B-204ENST00000463837 SSX7Q7RTT5 188 aa16.9■□□□□ 0.3
CCDC88B-204ENST00000463837 GVQW1Q8N7I0 195 aa16.9■□□□□ 0.3
CCDC88B-204ENST00000463837 PECRQ9BY49 303 aa16.9■□□□□ 0.3
CCDC88B-204ENST00000463837 MAP1LC3B2A6NCE7 125 aa16.9■□□□□ 0.3
CCDC88B-204ENST00000463837 IGF2P01344 180 aa16.9■□□□□ 0.3
CCDC88B-204ENST00000463837 MDH2P40926 338 aaKnown RBP16.9■□□□□ 0.3
CCDC88B-204ENST00000463837 CD200R1LQ6Q8B3 271 aa16.9■□□□□ 0.3
CCDC88B-204ENST00000463837 GPBAR1Q8TDU6 330 aa16.9■□□□□ 0.3
CCDC88B-204ENST00000463837 MAP1LC3BQ9GZQ8 125 aa16.9■□□□□ 0.3
CCDC88B-204ENST00000463837 SIRT7Q9NRC8 400 aa16.9■□□□□ 0.3
CCDC88B-204ENST00000463837 LY75O60449 1722 aa16.9■□□□□ 0.3
CCDC88B-204ENST00000463837 BRWD1Q9NSI6 2320 aa16.9■□□□□ 0.3
CCDC88B-204ENST00000463837 NTN1O95631 604 aa16.9■□□□□ 0.3
CCDC88B-204ENST00000463837 CT45A10P0DMU9 189 aa16.9■□□□□ 0.3
CCDC88B-204ENST00000463837 ERHP84090 104 aaKnown RBP16.9■□□□□ 0.3
CCDC88B-204ENST00000463837 ATP6V1FQ16864 119 aa16.9■□□□□ 0.3
CCDC88B-204ENST00000463837 MRGPREQ86SM8 312 aa16.9■□□□□ 0.3
CCDC88B-204ENST00000463837 SCCPDHQ8NBX0 429 aa16.9■□□□□ 0.3
CCDC88B-204ENST00000463837 TRMT61AQ96FX7 289 aaKnown RBP16.9■□□□□ 0.3
CCDC88B-204ENST00000463837 PARD6AQ9NPB6 346 aa16.9■□□□□ 0.3
CCDC88B-204ENST00000463837 ZNF355PQ9NSJ1 428 aa16.9■□□□□ 0.3
CCDC88B-204ENST00000463837 TIPARPQ7Z3E1 657 aaKnown RBP16.9■□□□□ 0.3
CCDC88B-204ENST00000463837 PROCRQ9UNN8 238 aa16.9■□□□□ 0.3
CCDC88B-204ENST00000463837 DSPPQ9NZW4 1301 aa16.89■□□□□ 0.3
CCDC88B-204ENST00000463837 MMP7P09237 267 aaPredicted RBP16.89■□□□□ 0.29
CCDC88B-204ENST00000463837 PDCD1Q15116 288 aa16.89■□□□□ 0.29
CCDC88B-204ENST00000463837 TOMM20LQ6UXN7 152 aa16.89■□□□□ 0.29
CCDC88B-204ENST00000463837 PAPPA2Q9BXP8 1791 aa16.89■□□□□ 0.29
CCDC88B-204ENST00000463837 GALR2O43603 387 aaPredicted RBP16.89■□□□□ 0.29
CCDC88B-204ENST00000463837 OR5AC1P0C628 307 aa16.89■□□□□ 0.29
CCDC88B-204ENST00000463837 ZNF17P17021 662 aa16.89■□□□□ 0.29
CCDC88B-204ENST00000463837 LIMS1P48059 325 aa16.89■□□□□ 0.29
CCDC88B-204ENST00000463837 CEACAM16Q2WEN9 425 aa16.89■□□□□ 0.29
CCDC88B-204ENST00000463837 ASB10Q8WXI3 467 aa16.89■□□□□ 0.29
CCDC88B-204ENST00000463837 MCHR2Q969V1 340 aa16.89■□□□□ 0.29
CCDC88B-204ENST00000463837 TRIP11Q15643 1979 aa16.89■□□□□ 0.29
CCDC88B-204ENST00000463837 TMEM30CPA0ZSE6 113 aa16.89■□□□□ 0.29
CCDC88B-204ENST00000463837 INSM1Q01101 510 aaPredicted RBP16.89■□□□□ 0.29
CCDC88B-204ENST00000463837 WNT16Q9UBV4 365 aa16.89■□□□□ 0.29
CCDC88B-204ENST00000463837 XKRY2A2RUG3 117 aa16.89■□□□□ 0.29
CCDC88B-204ENST00000463837 ADAP1O75689 374 aa16.89■□□□□ 0.29
CCDC88B-204ENST00000463837 DEFA4P12838 97 aa16.89■□□□□ 0.29
CCDC88B-204ENST00000463837 SLC38A11Q08AI6 406 aa16.89■□□□□ 0.29
CCDC88B-204ENST00000463837 DEFB127Q9H1M4 99 aa16.89■□□□□ 0.29
CCDC88B-204ENST00000463837 RER1O15258 196 aa16.88■□□□□ 0.29
CCDC88B-204ENST00000463837 IGFBP7Q16270 282 aa16.88■□□□□ 0.29
CCDC88B-204ENST00000463837 PRSS41Q7RTY9 318 aa16.88■□□□□ 0.29
CCDC88B-204ENST00000463837 C6orf201Q7Z4U5 140 aa16.88■□□□□ 0.29
CCDC88B-204ENST00000463837 VSTM2LQ96N03 204 aa16.88■□□□□ 0.29
CCDC88B-204ENST00000463837 GPA33Q99795 319 aa16.88■□□□□ 0.29
CCDC88B-204ENST00000463837 OCIAD1Q9NX40 245 aa16.88■□□□□ 0.29
CCDC88B-204ENST00000463837 FAM24AA6NFZ4 105 aa16.88■□□□□ 0.29
CCDC88B-204ENST00000463837 SHISA8B8ZZ34 492 aa16.88■□□□□ 0.29
CCDC88B-204ENST00000463837 HOXB3P14651 431 aaPredicted RBP16.88■□□□□ 0.29
CCDC88B-204ENST00000463837 C20orf196Q8IYI0 205 aa16.88■□□□□ 0.29
CCDC88B-204ENST00000463837 ROBO4Q8WZ75 1007 aa16.88■□□□□ 0.29
CCDC88B-204ENST00000463837 FAM173AQ9BQD7 235 aa16.88■□□□□ 0.29
CCDC88B-204ENST00000463837 FAAP24Q9BTP7 215 aa16.88■□□□□ 0.29
CCDC88B-204ENST00000463837 MYO7AQ13402 2215 aa16.88■□□□□ 0.29
CCDC88B-204ENST00000463837 CRYAAP02489 173 aa16.88■□□□□ 0.29
CCDC88B-204ENST00000463837 CSN1S1P47710 185 aa16.88■□□□□ 0.29
CCDC88B-204ENST00000463837 GNG3P63215 75 aa16.88■□□□□ 0.29
CCDC88B-204ENST00000463837 EIF3IQ13347 325 aaKnown RBP16.88■□□□□ 0.29
CCDC88B-204ENST00000463837 TAAR9Q96RI9 348 aa16.88■□□□□ 0.29
CCDC88B-204ENST00000463837 LINC01565O15544 149 aa16.88■□□□□ 0.29
CCDC88B-204ENST00000463837 OR5G3P0C626 314 aa16.88■□□□□ 0.29
CCDC88B-204ENST00000463837 SMIM21Q3B7S5 101 aa16.88■□□□□ 0.29
CCDC88B-204ENST00000463837 NCMAPQ5T1S8 102 aa16.88■□□□□ 0.29
CCDC88B-204ENST00000463837 TSEN54Q7Z6J9 526 aaKnown RBP16.88■□□□□ 0.29
CCDC88B-204ENST00000463837 FAM181AQ8N9Y4 354 aa16.88■□□□□ 0.29
CCDC88B-204ENST00000463837 ISOC2Q96AB3 205 aa16.88■□□□□ 0.29
CCDC88B-204ENST00000463837 Q9N2K0 584 aa16.88■□□□□ 0.29
CCDC88B-204ENST00000463837 SCN4AP35499 1836 aa16.87■□□□□ 0.29
CCDC88B-204ENST00000463837 ARG1P05089 322 aa16.87■□□□□ 0.29
CCDC88B-204ENST00000463837 CNN1P51911 297 aaKnown RBP16.87■□□□□ 0.29
CCDC88B-204ENST00000463837 AGFG1P52594 562 aaKnown RBP16.87■□□□□ 0.29
Retrieved 100 of 20,778 RNA–protein pairs in 57.5 ms