RNA–Protein interactions for RNA: ENST00000460593.1

CPSF3-202, Transcript of cleavage and polyadenylation specific factor 3, humanhuman

TSL 1 (best) BASIC

Gene CPSF3, Length 3,157 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF3-202ENST00000460593 TBX21Q9UL17 535 aa10.27□□□□□ -0.77
CPSF3-202ENST00000460593 ANAPC10Q9UM13 185 aa10.27□□□□□ -0.77
CPSF3-202ENST00000460593 E5RGE8 158 aa10.26□□□□□ -0.77
CPSF3-202ENST00000460593 CYTIPO60759 359 aa10.26□□□□□ -0.77
CPSF3-202ENST00000460593 ATP6V0CP27449 155 aa10.26□□□□□ -0.77
CPSF3-202ENST00000460593 RNASE11Q8TAA1 199 aaKnown RBP10.26□□□□□ -0.77
CPSF3-202ENST00000460593 SPPL3Q8TCT6 385 aa10.26□□□□□ -0.77
CPSF3-202ENST00000460593 THAP3Q8WTV1 239 aaPredicted RBP10.26□□□□□ -0.77
CPSF3-202ENST00000460593 CPNE4Q96A23 557 aaPredicted RBP10.26□□□□□ -0.77
CPSF3-202ENST00000460593 PRODH2Q9UF12 536 aa10.26□□□□□ -0.77
CPSF3-202ENST00000460593 AK3Q9UIJ7 227 aa10.26□□□□□ -0.77
CPSF3-202ENST00000460593 NSG2Q9Y328 171 aa10.26□□□□□ -0.77
CPSF3-202ENST00000460593 A0A087WZY1 265 aa10.26□□□□□ -0.77
CPSF3-202ENST00000460593 ZNF724A8MTY0 619 aa10.26□□□□□ -0.77
CPSF3-202ENST00000460593 SRP19P09132 144 aaKnown RBP10.26□□□□□ -0.77
CPSF3-202ENST00000460593 OR5H8P0DN80 308 aa10.26□□□□□ -0.77
CPSF3-202ENST00000460593 FUT3P21217 361 aa10.26□□□□□ -0.77
CPSF3-202ENST00000460593 MAS1LP35410 378 aa10.26□□□□□ -0.77
CPSF3-202ENST00000460593 EFNA3P52797 238 aa10.26□□□□□ -0.77
CPSF3-202ENST00000460593 FAM180AQ6UWF9 173 aa10.26□□□□□ -0.77
CPSF3-202ENST00000460593 FBXW12Q6X9E4 464 aa10.26□□□□□ -0.77
CPSF3-202ENST00000460593 ASB10Q8WXI3 467 aa10.26□□□□□ -0.77
CPSF3-202ENST00000460593 WFIKKN1Q96NZ8 548 aa10.26□□□□□ -0.77
CPSF3-202ENST00000460593 FOXD3Q9UJU5 478 aaPredicted RBP10.26□□□□□ -0.77
CPSF3-202ENST00000460593 NSG1A0A0A6YYJ2 146 aa10.26□□□□□ -0.77
CPSF3-202ENST00000460593 HIKESHIQ53FT3 197 aa10.26□□□□□ -0.77
CPSF3-202ENST00000460593 DPPA2Q7Z7J5 298 aa10.26□□□□□ -0.77
CPSF3-202ENST00000460593 ZNF664Q8N3J9 261 aa10.26□□□□□ -0.77
CPSF3-202ENST00000460593 ZNF248Q8NDW4 579 aa10.26□□□□□ -0.77
CPSF3-202ENST00000460593 GPBAR1Q8TDU6 330 aa10.26□□□□□ -0.77
CPSF3-202ENST00000460593 RNF208Q9H0X6 261 aa10.26□□□□□ -0.77
CPSF3-202ENST00000460593 SLC7A11Q9UPY5 501 aa10.26□□□□□ -0.77
CPSF3-202ENST00000460593 KCNIP3Q9Y2W7 256 aa10.26□□□□□ -0.77
CPSF3-202ENST00000460593 KIAA0100Q14667 2235 aaKnown RBP10.25□□□□□ -0.77
CPSF3-202ENST00000460593 CRYM-AS1A6NIL9 109 aa10.25□□□□□ -0.77
CPSF3-202ENST00000460593 B4DGG1 531 aa10.25□□□□□ -0.77
CPSF3-202ENST00000460593 GPR137BO60478 399 aa10.25□□□□□ -0.77
CPSF3-202ENST00000460593 CST7O76096 145 aa10.25□□□□□ -0.77
CPSF3-202ENST00000460593 TMEM196Q5HYL7 178 aa10.25□□□□□ -0.77
CPSF3-202ENST00000460593 SHISA6Q6ZSJ9 500 aa10.25□□□□□ -0.77
CPSF3-202ENST00000460593 COMMD1Q8N668 190 aa10.25□□□□□ -0.77
CPSF3-202ENST00000460593 KDF1Q8NAX2 398 aaPredicted RBP10.25□□□□□ -0.77
CPSF3-202ENST00000460593 URM1Q9BTM9 101 aaKnown RBP10.25□□□□□ -0.77
CPSF3-202ENST00000460593 FAAP24Q9BTP7 215 aa10.25□□□□□ -0.77
CPSF3-202ENST00000460593 SLC25A31Q9H0C2 315 aa10.25□□□□□ -0.77
CPSF3-202ENST00000460593 PLEKHA2Q9HB19 425 aa10.25□□□□□ -0.77
CPSF3-202ENST00000460593 CYP8B1Q9UNU6 501 aa10.25□□□□□ -0.77
CPSF3-202ENST00000460593 SMCO3A2RU48 225 aa10.25□□□□□ -0.77
CPSF3-202ENST00000460593 ANGPTL7O43827 346 aa10.25□□□□□ -0.77
CPSF3-202ENST00000460593 NPIPB7O75200 414 aa10.25□□□□□ -0.77
CPSF3-202ENST00000460593 GUSBP08236 651 aa10.25□□□□□ -0.77
CPSF3-202ENST00000460593 EPHA1P21709 976 aa10.25□□□□□ -0.77
CPSF3-202ENST00000460593 LMO1P25800 156 aa10.25□□□□□ -0.77
CPSF3-202ENST00000460593 CSNK1A1P48729 337 aa10.25□□□□□ -0.77
CPSF3-202ENST00000460593 TAS2R46P59540 309 aa10.25□□□□□ -0.77
CPSF3-202ENST00000460593 SPCS3P61009 180 aa10.25□□□□□ -0.77
CPSF3-202ENST00000460593 PLCXD2Q0VAA5 305 aa10.25□□□□□ -0.77
CPSF3-202ENST00000460593 ICAM4Q14773 271 aa10.25□□□□□ -0.77
CPSF3-202ENST00000460593 WDR25Q64LD2 544 aaPredicted RBP10.25□□□□□ -0.77
CPSF3-202ENST00000460593 FAM210BQ96KR6 192 aa10.25□□□□□ -0.77
CPSF3-202ENST00000460593 CCNL2Q96S94 520 aaPredicted RBP10.25□□□□□ -0.77
CPSF3-202ENST00000460593 LHFPL6Q9Y693 200 aa10.25□□□□□ -0.77
CPSF3-202ENST00000460593 WSB1Q9Y6I7 421 aa10.25□□□□□ -0.77
CPSF3-202ENST00000460593 TLCD2A6NGC4 264 aa10.24□□□□□ -0.77
CPSF3-202ENST00000460593 ZNF850A8MQ14 1090 aa10.24□□□□□ -0.77
CPSF3-202ENST00000460593 PGCP20142 388 aa10.24□□□□□ -0.77
CPSF3-202ENST00000460593 IGLV3-21P80748 117 aaPredicted RBP10.24□□□□□ -0.77
CPSF3-202ENST00000460593 ARMC6Q6NXE6 501 aa10.24□□□□□ -0.77
CPSF3-202ENST00000460593 NECAP1Q8NC96 275 aa10.24□□□□□ -0.77
CPSF3-202ENST00000460593 RHBDD1Q8TEB9 315 aa10.24□□□□□ -0.77
CPSF3-202ENST00000460593 TMEM171Q8WVE6 324 aa10.24□□□□□ -0.77
CPSF3-202ENST00000460593 RTN4IP1Q8WWV3 396 aaPredicted RBP10.24□□□□□ -0.77
CPSF3-202ENST00000460593 KCNK17Q96T54 332 aa10.24□□□□□ -0.77
CPSF3-202ENST00000460593 ASXL3Q9C0F0 2248 aa10.24□□□□□ -0.77
CPSF3-202ENST00000460593 SCGNO76038 276 aa10.24□□□□□ -0.77
CPSF3-202ENST00000460593 SEMA4FO95754 770 aa10.24□□□□□ -0.77
CPSF3-202ENST00000460593 PTBP3O95758 552 aaKnown RBP10.24□□□□□ -0.77
CPSF3-202ENST00000460593 MT-ATP6P00846 226 aa10.24□□□□□ -0.77
CPSF3-202ENST00000460593 CD55P08174 381 aa10.24□□□□□ -0.77
CPSF3-202ENST00000460593 MMP7P09237 267 aaPredicted RBP10.24□□□□□ -0.77
CPSF3-202ENST00000460593 COX5BP10606 129 aa10.24□□□□□ -0.77
CPSF3-202ENST00000460593 FAHP16930 419 aa10.24□□□□□ -0.77
CPSF3-202ENST00000460593 POLR2HP52434 150 aaKnown RBP10.24□□□□□ -0.77
CPSF3-202ENST00000460593 HSF1Q00613 529 aa10.24□□□□□ -0.77
CPSF3-202ENST00000460593 EWSR1Q01844 656 aaKnown RBP eCLIP10.24□□□□□ -0.77
CPSF3-202ENST00000460593 TLE3Q04726 772 aa10.24□□□□□ -0.77
CPSF3-202ENST00000460593 KISS1Q15726 138 aa10.24□□□□□ -0.77
CPSF3-202ENST00000460593 CRIP3Q6Q6R5 217 aa10.24□□□□□ -0.77
CPSF3-202ENST00000460593 BEND4Q6ZU67 534 aa10.24□□□□□ -0.77
CPSF3-202ENST00000460593 C9orf40Q8IXQ3 194 aa10.24□□□□□ -0.77
CPSF3-202ENST00000460593 CUTCQ9NTM9 273 aa10.24□□□□□ -0.77
CPSF3-202ENST00000460593 PLEKHJ1Q9NW61 149 aa10.24□□□□□ -0.77
CPSF3-202ENST00000460593 ARHGAP21Q5T5U3 1957 aa10.24□□□□□ -0.77
CPSF3-202ENST00000460593 CCDC187A0A096LP49 1063 aa10.24□□□□□ -0.77
CPSF3-202ENST00000460593 IGSF23A1L1A6 192 aa10.24□□□□□ -0.77
CPSF3-202ENST00000460593 APODP05090 189 aa10.24□□□□□ -0.77
CPSF3-202ENST00000460593 MYOGP15173 224 aa10.24□□□□□ -0.77
CPSF3-202ENST00000460593 HHEXQ03014 270 aa10.24□□□□□ -0.77
CPSF3-202ENST00000460593 FZD2Q14332 565 aa10.24□□□□□ -0.77
CPSF3-202ENST00000460593 ABCA11PQ4W5N1 156 aa10.24□□□□□ -0.77
Retrieved 100 of 20,778 RNA–protein pairs in 34.7 ms