RNA–Protein interactions for RNA: ENST00000433762.1

COL6A3-207, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 1 (best)

Gene COL6A3, Length 2,379 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-207ENST00000433762 S100A10P60903 97 aa11.9□□□□□ -0.51
COL6A3-207ENST00000433762 CHAF1BQ13112 559 aa11.9□□□□□ -0.51
COL6A3-207ENST00000433762 SRSF7Q16629 238 aaKnown RBP eCLIP11.9□□□□□ -0.51
COL6A3-207ENST00000433762 SNAI3Q3KNW1 292 aa11.9□□□□□ -0.51
COL6A3-207ENST00000433762 ABLIM2Q6H8Q1 611 aa11.9□□□□□ -0.51
COL6A3-207ENST00000433762 IQCF2Q8IXL9 164 aa11.9□□□□□ -0.51
COL6A3-207ENST00000433762 LRRC18Q8N456 261 aa11.9□□□□□ -0.51
COL6A3-207ENST00000433762 IFI44Q8TCB0 444 aa11.9□□□□□ -0.51
COL6A3-207ENST00000433762 NPRL2Q8WTW4 380 aa11.9□□□□□ -0.51
COL6A3-207ENST00000433762 UCN2Q96RP3 112 aa11.9□□□□□ -0.51
COL6A3-207ENST00000433762 CMSS1Q9BQ75 279 aaKnown RBP11.9□□□□□ -0.51
COL6A3-207ENST00000433762 NAA60Q9H7X0 242 aa11.9□□□□□ -0.51
COL6A3-207ENST00000433762 ELL3Q9HB65 397 aaPredicted RBP11.9□□□□□ -0.51
COL6A3-207ENST00000433762 TREM1Q9NP99 234 aa11.9□□□□□ -0.51
COL6A3-207ENST00000433762 ACKR4Q9NPB9 350 aa11.9□□□□□ -0.51
COL6A3-207ENST00000433762 PTRH2Q9Y3E5 179 aaKnown RBP11.9□□□□□ -0.51
COL6A3-207ENST00000433762 IGKV1D-8A0A087WSZ0 117 aa11.89□□□□□ -0.51
COL6A3-207ENST00000433762 FAM90A10PA6NDY2 464 aa11.89□□□□□ -0.51
COL6A3-207ENST00000433762 FAM90A18PA6NE21 464 aa11.89□□□□□ -0.51
COL6A3-207ENST00000433762 FAM90A16PA6NEW6 464 aa11.89□□□□□ -0.51
COL6A3-207ENST00000433762 FAM90A20PA6NIJ5 464 aa11.89□□□□□ -0.51
COL6A3-207ENST00000433762 FAM90A8PA6NJQ4 464 aa11.89□□□□□ -0.51
COL6A3-207ENST00000433762 FAM90A7PA6NKC0 464 aa11.89□□□□□ -0.51
COL6A3-207ENST00000433762 FAM90A22PA8MWA6 464 aa11.89□□□□□ -0.51
COL6A3-207ENST00000433762 FAM90A12PA8MX19 464 aa11.89□□□□□ -0.51
COL6A3-207ENST00000433762 FAM90A5PA8MXJ8 464 aa11.89□□□□□ -0.51
COL6A3-207ENST00000433762 FAM90A23PA8MXZ1 464 aa11.89□□□□□ -0.51
COL6A3-207ENST00000433762 H7C1Q1 480 aa11.89□□□□□ -0.51
COL6A3-207ENST00000433762 KCNAB3O43448 404 aa11.89□□□□□ -0.51
COL6A3-207ENST00000433762 KNG1P01042 644 aa11.89□□□□□ -0.51
COL6A3-207ENST00000433762 SFTPBP07988 381 aa11.89□□□□□ -0.51
COL6A3-207ENST00000433762 FCGR3AP08637 254 aa11.89□□□□□ -0.51
COL6A3-207ENST00000433762 FAM90A15PP0C7V4 464 aa11.89□□□□□ -0.51
COL6A3-207ENST00000433762 FAM90A13PP0C7W8 464 aa11.89□□□□□ -0.51
COL6A3-207ENST00000433762 FAM90A14PP0C7W9 464 aa11.89□□□□□ -0.51
COL6A3-207ENST00000433762 FAM90A24PP0C7X0 464 aa11.89□□□□□ -0.51
COL6A3-207ENST00000433762 GABRR1P24046 479 aa11.89□□□□□ -0.51
COL6A3-207ENST00000433762 FUT6P51993 359 aa11.89□□□□□ -0.51
COL6A3-207ENST00000433762 ZFP36L1Q07352 338 aaKnown RBP11.89□□□□□ -0.51
COL6A3-207ENST00000433762 TMEM187Q14656 261 aa11.89□□□□□ -0.51
COL6A3-207ENST00000433762 HLA-BQ31612 363 aa11.89□□□□□ -0.51
COL6A3-207ENST00000433762 GGNBP1Q5YKI7 109 aa11.89□□□□□ -0.51
COL6A3-207ENST00000433762 RPL7L1Q6DKI1 246 aaKnown RBP11.89□□□□□ -0.51
COL6A3-207ENST00000433762 TMEM156Q8N614 296 aa11.89□□□□□ -0.51
COL6A3-207ENST00000433762 BHLHE23Q8NDY6 225 aa11.89□□□□□ -0.51
COL6A3-207ENST00000433762 BORCS8Q96FH0 119 aa11.89□□□□□ -0.51
COL6A3-207ENST00000433762 GNRHR2Q96P88 292 aa11.89□□□□□ -0.51
COL6A3-207ENST00000433762 SYT3Q9BQG1 590 aa11.89□□□□□ -0.51
COL6A3-207ENST00000433762 TLNRD1Q9H1K6 362 aa11.89□□□□□ -0.51
COL6A3-207ENST00000433762 GSKIPQ9P0R6 139 aa11.89□□□□□ -0.51
COL6A3-207ENST00000433762 GLAP06280 429 aa11.89□□□□□ -0.51
COL6A3-207ENST00000433762 SEC11BP0C7V7 166 aa11.89□□□□□ -0.51
COL6A3-207ENST00000433762 ZNF728P0DKX0 622 aa11.89□□□□□ -0.51
COL6A3-207ENST00000433762 PVALBP20472 110 aaPredicted RBP11.89□□□□□ -0.51
COL6A3-207ENST00000433762 ACKR3P25106 362 aa11.89□□□□□ -0.51
COL6A3-207ENST00000433762 RAB5CP51148 216 aa11.89□□□□□ -0.51
COL6A3-207ENST00000433762 DVL1P1P54792 670 aaPredicted RBP11.89□□□□□ -0.51
COL6A3-207ENST00000433762 UCP2P55851 309 aa11.89□□□□□ -0.51
COL6A3-207ENST00000433762 PEAR1Q5VY43 1037 aaPredicted RBP11.89□□□□□ -0.51
COL6A3-207ENST00000433762 Q6ZS49 121 aa11.89□□□□□ -0.51
COL6A3-207ENST00000433762 DTX1Q86Y01 620 aa11.89□□□□□ -0.51
COL6A3-207ENST00000433762 FAM185AQ8N0U4 392 aa11.89□□□□□ -0.51
COL6A3-207ENST00000433762 Q8NFD4 153 aa11.89□□□□□ -0.51
COL6A3-207ENST00000433762 SNIP1Q8TAD8 396 aaKnown RBP11.89□□□□□ -0.51
COL6A3-207ENST00000433762 MR1Q95460 341 aa11.89□□□□□ -0.51
COL6A3-207ENST00000433762 GPR173Q9NS66 373 aa11.89□□□□□ -0.51
COL6A3-207ENST00000433762 AK3Q9UIJ7 227 aa11.89□□□□□ -0.51
COL6A3-207ENST00000433762 AMDHD2Q9Y303 409 aa11.89□□□□□ -0.51
COL6A3-207ENST00000433762 TIMM10BQ9Y5J6 103 aa11.89□□□□□ -0.51
COL6A3-207ENST00000433762 NSG1A0A0A6YYJ2 146 aa11.88□□□□□ -0.51
COL6A3-207ENST00000433762 ZNF716A6NP11 495 aa11.88□□□□□ -0.51
COL6A3-207ENST00000433762 XRCC2O43543 280 aa11.88□□□□□ -0.51
COL6A3-207ENST00000433762 LRP3O75074 770 aa11.88□□□□□ -0.51
COL6A3-207ENST00000433762 DBHP09172 617 aa11.88□□□□□ -0.51
COL6A3-207ENST00000433762 FCGR2CP31995 323 aa11.88□□□□□ -0.51
COL6A3-207ENST00000433762 RFC3P40938 356 aa11.88□□□□□ -0.51
COL6A3-207ENST00000433762 SRPXP78539 464 aa11.88□□□□□ -0.51
COL6A3-207ENST00000433762 SPEM2Q0P670 501 aa11.88□□□□□ -0.51
COL6A3-207ENST00000433762 IL13RA2Q14627 380 aa11.88□□□□□ -0.51
COL6A3-207ENST00000433762 TMEM211Q6ICI0 200 aa11.88□□□□□ -0.51
COL6A3-207ENST00000433762 CCDC71LQ8N9Z2 235 aa11.88□□□□□ -0.51
COL6A3-207ENST00000433762 SRXN1Q9BYN0 137 aa11.88□□□□□ -0.51
COL6A3-207ENST00000433762 AKIRIN1Q9H9L7 192 aaPredicted RBP11.88□□□□□ -0.51
COL6A3-207ENST00000433762 ZNF286AQ9HBT8 521 aa11.88□□□□□ -0.51
COL6A3-207ENST00000433762 FAM212BQ9NTI7 297 aaPredicted RBP11.88□□□□□ -0.51
COL6A3-207ENST00000433762 RNASEK-C17orf49H0YIS7 233 aa11.87□□□□□ -0.51
COL6A3-207ENST00000433762 TNFSF11O14788 317 aa11.87□□□□□ -0.51
COL6A3-207ENST00000433762 MED6O75586 246 aa11.87□□□□□ -0.51
COL6A3-207ENST00000433762 NRASP01111 189 aa11.87□□□□□ -0.51
COL6A3-207ENST00000433762 PIGPP57054 158 aa11.87□□□□□ -0.51
COL6A3-207ENST00000433762 WDR5BQ86VZ2 330 aa11.87□□□□□ -0.51
COL6A3-207ENST00000433762 OSR2Q8N2R0 312 aa11.87□□□□□ -0.51
COL6A3-207ENST00000433762 MAFIPQ8WZ33 124 aa11.87□□□□□ -0.51
COL6A3-207ENST00000433762 SPSB4Q96A44 273 aa11.87□□□□□ -0.51
COL6A3-207ENST00000433762 MOB3AQ96BX8 217 aa11.87□□□□□ -0.51
COL6A3-207ENST00000433762 OR2S2Q9NQN1 319 aa11.87□□□□□ -0.51
COL6A3-207ENST00000433762 PLSCR2Q9NRY7 297 aa11.87□□□□□ -0.51
COL6A3-207ENST00000433762 PRR13Q9NZ81 148 aa11.87□□□□□ -0.51
COL6A3-207ENST00000433762 FBXL17Q9UF56 701 aa11.87□□□□□ -0.51
COL6A3-207ENST00000433762 SLC7A11Q9UPY5 501 aa11.87□□□□□ -0.51
Retrieved 100 of 20,778 RNA–protein pairs in 36 ms