RNA–Protein interactions for RNA: ENST00000430086.1

CCDC88A-206, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 3

Gene CCDC88A, Length 582 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-206ENST00000430086 ERMNQ8TAM6 284 aa3.65□□□□□ -1.83
CCDC88A-206ENST00000430086 STOML3Q8TAV4 291 aa3.65□□□□□ -1.83
CCDC88A-206ENST00000430086 HGDQ93099 445 aa3.65□□□□□ -1.83
CCDC88A-206ENST00000430086 RERGQ96A58 199 aaPredicted RBP3.65□□□□□ -1.83
CCDC88A-206ENST00000430086 CREB3L1Q96BA8 519 aa3.65□□□□□ -1.83
CCDC88A-206ENST00000430086 AURKBQ96GD4 344 aaPredicted RBP3.65□□□□□ -1.83
CCDC88A-206ENST00000430086 WFIKKN1Q96NZ8 548 aa3.65□□□□□ -1.83
CCDC88A-206ENST00000430086 TMED9Q9BVK6 235 aa3.65□□□□□ -1.83
CCDC88A-206ENST00000430086 NUDT9Q9BW91 350 aa3.65□□□□□ -1.83
CCDC88A-206ENST00000430086 PARP12Q9H0J9 701 aaKnown RBP3.65□□□□□ -1.83
CCDC88A-206ENST00000430086 CLMPQ9H6B4 373 aa3.65□□□□□ -1.83
CCDC88A-206ENST00000430086 EDA2RQ9HAV5 297 aa3.65□□□□□ -1.83
CCDC88A-206ENST00000430086 RRAGDQ9NQL2 400 aaPredicted RBP3.65□□□□□ -1.83
CCDC88A-206ENST00000430086 FKBP14Q9NWM8 211 aa3.65□□□□□ -1.83
CCDC88A-206ENST00000430086 TAS2R13Q9NYV9 303 aa3.65□□□□□ -1.83
CCDC88A-206ENST00000430086 CD84Q9UIB8 345 aa3.65□□□□□ -1.83
CCDC88A-206ENST00000430086 HES2Q9Y543 173 aa3.65□□□□□ -1.83
CCDC88A-206ENST00000430086 ORC6Q9Y5N6 252 aa3.65□□□□□ -1.83
CCDC88A-206ENST00000430086 CDC42BPBQ9Y5S2 1711 aa3.64□□□□□ -1.83
CCDC88A-206ENST00000430086 A0A0J9YXY3 114 aa3.64□□□□□ -1.83
CCDC88A-206ENST00000430086 EFCAB9A8MZ26 197 aa3.64□□□□□ -1.83
CCDC88A-206ENST00000430086 J3QT63 122 aa3.64□□□□□ -1.83
CCDC88A-206ENST00000430086 KCNK1O00180 336 aa3.64□□□□□ -1.83
CCDC88A-206ENST00000430086 CXCR6O00574 342 aa3.64□□□□□ -1.83
CCDC88A-206ENST00000430086 SLC22A5O76082 557 aa3.64□□□□□ -1.83
CCDC88A-206ENST00000430086 KRT75O95678 551 aa3.64□□□□□ -1.83
CCDC88A-206ENST00000430086 TYMSP04818 313 aa3.64□□□□□ -1.83
CCDC88A-206ENST00000430086 FABP3P05413 133 aa3.64□□□□□ -1.83
CCDC88A-206ENST00000430086 BCHEP06276 602 aa3.64□□□□□ -1.83
CCDC88A-206ENST00000430086 GIPP09681 153 aaPredicted RBP3.64□□□□□ -1.83
CCDC88A-206ENST00000430086 PRPS1L1P21108 318 aa3.64□□□□□ -1.83
CCDC88A-206ENST00000430086 TALDO1P37837 337 aa3.64□□□□□ -1.83
CCDC88A-206ENST00000430086 HSPA13P48723 471 aa3.64□□□□□ -1.83
CCDC88A-206ENST00000430086 IDH3GP51553 393 aaPredicted RBP3.64□□□□□ -1.83
CCDC88A-206ENST00000430086 FGF8P55075 233 aaPredicted RBP3.64□□□□□ -1.83
CCDC88A-206ENST00000430086 CLDN12P56749 244 aa3.64□□□□□ -1.83
CCDC88A-206ENST00000430086 TAS2R46P59540 309 aa3.64□□□□□ -1.83
CCDC88A-206ENST00000430086 CXCR4P61073 352 aa3.64□□□□□ -1.83
CCDC88A-206ENST00000430086 UBE2NP61088 152 aaKnown RBP3.64□□□□□ -1.83
CCDC88A-206ENST00000430086 PRR3P79522 188 aaKnown RBP3.64□□□□□ -1.83
CCDC88A-206ENST00000430086 SGCAQ16586 387 aa3.64□□□□□ -1.83
CCDC88A-206ENST00000430086 GUK1Q16774 197 aa3.64□□□□□ -1.83
CCDC88A-206ENST00000430086 TMEM176BQ3YBM2 270 aaPredicted RBP3.64□□□□□ -1.83
CCDC88A-206ENST00000430086 ZNF493Q6ZR52 646 aa3.64□□□□□ -1.83
CCDC88A-206ENST00000430086 CCDC121Q6ZUS5 278 aa3.64□□□□□ -1.83
CCDC88A-206ENST00000430086 STRADAQ7RTN6 431 aa3.64□□□□□ -1.83
CCDC88A-206ENST00000430086 NT5DC3Q86UY8 548 aa3.64□□□□□ -1.83
CCDC88A-206ENST00000430086 GAPTQ8N292 157 aa3.64□□□□□ -1.83
CCDC88A-206ENST00000430086 OR10AD1Q8NGE0 317 aa3.64□□□□□ -1.83
CCDC88A-206ENST00000430086 OR52E4Q8NGH9 312 aa3.64□□□□□ -1.83
CCDC88A-206ENST00000430086 PIFOQ8TCI5 191 aa3.64□□□□□ -1.83
CCDC88A-206ENST00000430086 BLOC1S5Q8TDH9 187 aa3.64□□□□□ -1.83
CCDC88A-206ENST00000430086 TMEM101Q96IK0 257 aa3.64□□□□□ -1.83
CCDC88A-206ENST00000430086 PGLYRP3Q96LB9 341 aa3.64□□□□□ -1.83
CCDC88A-206ENST00000430086 MBOAT7Q96N66 472 aa3.64□□□□□ -1.83
CCDC88A-206ENST00000430086 OR11A1Q9GZK7 315 aa3.64□□□□□ -1.83
CCDC88A-206ENST00000430086 RBM22Q9NW64 420 aaKnown RBP eCLIP3.64□□□□□ -1.83
CCDC88A-206ENST00000430086 DDIT4Q9NX09 232 aa3.64□□□□□ -1.83
CCDC88A-206ENST00000430086 UVRAGQ9P2Y5 699 aa3.64□□□□□ -1.83
CCDC88A-206ENST00000430086 VAX2Q9UIW0 290 aa3.64□□□□□ -1.83
CCDC88A-206ENST00000430086 ZNF337Q9Y3M9 751 aa3.64□□□□□ -1.83
CCDC88A-206ENST00000430086 PLEKHG1Q9ULL1 1385 aa3.63□□□□□ -1.83
CCDC88A-206ENST00000430086 RBM14-RBM4A0A0A0MSL8 147 aaKnown RBP3.63□□□□□ -1.83
CCDC88A-206ENST00000430086 TRAV8-6A0A0B4J262 113 aa3.63□□□□□ -1.83
CCDC88A-206ENST00000430086 A0A0G2JN53 185 aa3.63□□□□□ -1.83
CCDC88A-206ENST00000430086 TINCRA0A1B0GVN0 87 aa3.63□□□□□ -1.83
CCDC88A-206ENST00000430086 C21orf140B9A014 251 aa3.63□□□□□ -1.83
CCDC88A-206ENST00000430086 F5H5T6 163 aa3.63□□□□□ -1.83
CCDC88A-206ENST00000430086 PEX7O00628 323 aa3.63□□□□□ -1.83
CCDC88A-206ENST00000430086 FAM189A1O60320 539 aa3.63□□□□□ -1.83
CCDC88A-206ENST00000430086 SUPT7LO94864 414 aa3.63□□□□□ -1.83
CCDC88A-206ENST00000430086 VAMP5O95183 116 aa3.63□□□□□ -1.83
CCDC88A-206ENST00000430086 GNAO1P09471 354 aa3.63□□□□□ -1.83
CCDC88A-206ENST00000430086 CHTF8P0CG12 524 aa3.63□□□□□ -1.83
CCDC88A-206ENST00000430086 ZNF17P17021 662 aa3.63□□□□□ -1.83
CCDC88A-206ENST00000430086 GRPRP30550 384 aa3.63□□□□□ -1.83
CCDC88A-206ENST00000430086 RCVRNP35243 200 aa3.63□□□□□ -1.83
CCDC88A-206ENST00000430086 CAPZBP47756 277 aa3.63□□□□□ -1.83
CCDC88A-206ENST00000430086 NCBP2P52298 156 aaKnown RBP eCLIP3.63□□□□□ -1.83
CCDC88A-206ENST00000430086 HERVK_113P61574 105 aa3.63□□□□□ -1.83
CCDC88A-206ENST00000430086 CACNG7P62955 275 aa3.63□□□□□ -1.83
CCDC88A-206ENST00000430086 ARG2P78540 354 aa3.63□□□□□ -1.83
CCDC88A-206ENST00000430086 BAXQ07812 192 aa3.63□□□□□ -1.83
CCDC88A-206ENST00000430086 CYP24A1Q07973 514 aa3.63□□□□□ -1.83
CCDC88A-206ENST00000430086 AESQ08117 197 aa3.63□□□□□ -1.83
CCDC88A-206ENST00000430086 DAZ2Q13117 558 aaKnown RBP3.63□□□□□ -1.83
CCDC88A-206ENST00000430086 PON3Q15166 354 aa3.63□□□□□ -1.83
CCDC88A-206ENST00000430086 ZNF630Q2M218 657 aaPredicted RBP3.63□□□□□ -1.83
CCDC88A-206ENST00000430086 HLA-DRB5Q30154 266 aa3.63□□□□□ -1.83
CCDC88A-206ENST00000430086 SPIN3Q5JUX0 258 aa3.63□□□□□ -1.83
CCDC88A-206ENST00000430086 CST9Q5W186 159 aa3.63□□□□□ -1.83
CCDC88A-206ENST00000430086 STEAP4Q687X5 459 aa3.63□□□□□ -1.83
CCDC88A-206ENST00000430086 LAMTOR1Q6IAA8 161 aa3.63□□□□□ -1.83
CCDC88A-206ENST00000430086 PRSS58Q8IYP2 241 aa3.63□□□□□ -1.83
CCDC88A-206ENST00000430086 COX18Q8N8Q8 333 aa3.63□□□□□ -1.83
CCDC88A-206ENST00000430086 DCAF4L2Q8NA75 395 aa3.63□□□□□ -1.83
CCDC88A-206ENST00000430086 NEIL3Q8TAT5 605 aa3.63□□□□□ -1.83
CCDC88A-206ENST00000430086 BLNKQ8WV28 456 aa3.63□□□□□ -1.83
CCDC88A-206ENST00000430086 RAB8BQ92930 207 aa3.63□□□□□ -1.83
CCDC88A-206ENST00000430086 METTL26Q96S19 204 aa3.63□□□□□ -1.83
Retrieved 100 of 20,778 RNA–protein pairs in 27.5 ms