RNA–Protein interactions for RNA: ENST00000424265.5

USP54-205, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 2

Gene USP54, Length 5,201 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-205ENST00000424265 FUT7Q11130 342 aa8.7□□□□□ -1.02
USP54-205ENST00000424265 SPNS2Q8IVW8 549 aa8.7□□□□□ -1.02
USP54-205ENST00000424265 MTURNQ8N3F0 131 aa8.7□□□□□ -1.02
USP54-205ENST00000424265 SLC26A10Q8NG04 563 aa8.7□□□□□ -1.02
USP54-205ENST00000424265 ABHD4Q8TB40 342 aa8.7□□□□□ -1.02
USP54-205ENST00000424265 ZCCHC14Q8WYQ9 949 aaKnown RBP8.7□□□□□ -1.02
USP54-205ENST00000424265 ANKRD9Q96BM1 317 aaPredicted RBP8.7□□□□□ -1.02
USP54-205ENST00000424265 CST9LQ9H4G1 147 aa8.7□□□□□ -1.02
USP54-205ENST00000424265 TRAV34A0A0B4J273 112 aa8.7□□□□□ -1.02
USP54-205ENST00000424265 RAB27BO00194 218 aa8.7□□□□□ -1.02
USP54-205ENST00000424265 NTN3O00634 580 aaPredicted RBP8.7□□□□□ -1.02
USP54-205ENST00000424265 FRKP42685 505 aaPredicted RBP8.7□□□□□ -1.02
USP54-205ENST00000424265 EFNA3P52797 238 aa8.7□□□□□ -1.02
USP54-205ENST00000424265 UCP3P55916 312 aa8.7□□□□□ -1.02
USP54-205ENST00000424265 RAB11AP62491 216 aa8.7□□□□□ -1.02
USP54-205ENST00000424265 ENTPD8Q5MY95 495 aa8.7□□□□□ -1.02
USP54-205ENST00000424265 OR4C15Q8NGM1 316 aa8.7□□□□□ -1.02
USP54-205ENST00000424265 GINS3Q9BRX5 216 aa8.7□□□□□ -1.02
USP54-205ENST00000424265 CST11Q9H112 138 aa8.7□□□□□ -1.02
USP54-205ENST00000424265 B3GAT1Q9P2W7 334 aa8.7□□□□□ -1.02
USP54-205ENST00000424265 SLC7A7Q9UM01 511 aa8.7□□□□□ -1.02
USP54-205ENST00000424265 MEIS3P1A6NDR6 274 aa8.7□□□□□ -1.02
USP54-205ENST00000424265 M0R3H8 397 aa8.7□□□□□ -1.02
USP54-205ENST00000424265 MT-ATP6P00846 226 aa8.7□□□□□ -1.02
USP54-205ENST00000424265 AMBPP02760 352 aa8.7□□□□□ -1.02
USP54-205ENST00000424265 TACSTD2P09758 323 aa8.7□□□□□ -1.02
USP54-205ENST00000424265 CCL4P13236 92 aa8.7□□□□□ -1.02
USP54-205ENST00000424265 TDGF1P13385 188 aa8.7□□□□□ -1.02
USP54-205ENST00000424265 CLDN12P56749 244 aa8.7□□□□□ -1.02
USP54-205ENST00000424265 ENDOGQ14249 297 aaKnown RBP8.7□□□□□ -1.02
USP54-205ENST00000424265 OR2T27Q8NH04 317 aa8.7□□□□□ -1.02
USP54-205ENST00000424265 ERGIC1Q969X5 290 aa8.7□□□□□ -1.02
USP54-205ENST00000424265 SDSLQ96GA7 329 aa8.7□□□□□ -1.02
USP54-205ENST00000424265 SAMD10Q9BYL1 202 aa8.7□□□□□ -1.02
USP54-205ENST00000424265 PLEKHA2Q9HB19 425 aa8.7□□□□□ -1.02
USP54-205ENST00000424265 AKR1C4P17516 323 aa8.69□□□□□ -1.02
USP54-205ENST00000424265 RNASEH2CQ8TDP1 164 aaKnown RBP8.69□□□□□ -1.02
USP54-205ENST00000424265 VAX2Q9UIW0 290 aa8.69□□□□□ -1.02
USP54-205ENST00000424265 CES1P1Q9UKY3 287 aa8.69□□□□□ -1.02
USP54-205ENST00000424265 TRAV39A0A0B4J263 110 aa8.69□□□□□ -1.02
USP54-205ENST00000424265 NBL1P41271 181 aa8.69□□□□□ -1.02
USP54-205ENST00000424265 TEX38Q6PEX7 206 aa8.69□□□□□ -1.02
USP54-205ENST00000424265 LHFPL4Q7Z7J7 247 aa8.69□□□□□ -1.02
USP54-205ENST00000424265 CPT1CQ8TCG5 803 aa8.69□□□□□ -1.02
USP54-205ENST00000424265 IL22RA2Q969J5 263 aa8.69□□□□□ -1.02
USP54-205ENST00000424265 KLHDC3Q9BQ90 382 aa8.69□□□□□ -1.02
USP54-205ENST00000424265 MMP25Q9NPA2 562 aa8.69□□□□□ -1.02
USP54-205ENST00000424265 SLC35D1Q9NTN3 355 aa8.69□□□□□ -1.02
USP54-205ENST00000424265 TMEM14AQ9Y6G1 99 aa8.69□□□□□ -1.02
USP54-205ENST00000424265 RAB29O14966 203 aa8.69□□□□□ -1.02
USP54-205ENST00000424265 GPANK1O95872 356 aa8.69□□□□□ -1.02
USP54-205ENST00000424265 ADRA2AP08913 450 aa8.69□□□□□ -1.02
USP54-205ENST00000424265 SLC35A1P78382 337 aa8.69□□□□□ -1.02
USP54-205ENST00000424265 ZNF429Q86V71 674 aa8.69□□□□□ -1.02
USP54-205ENST00000424265 COMMD2Q86X83 199 aa8.69□□□□□ -1.02
USP54-205ENST00000424265 UEVLDQ8IX04 471 aa8.69□□□□□ -1.02
USP54-205ENST00000424265 OR4C16Q8NGL9 310 aa8.69□□□□□ -1.02
USP54-205ENST00000424265 OR6N1Q8NGY5 312 aa8.69□□□□□ -1.02
USP54-205ENST00000424265 RASD2Q96D21 266 aa8.69□□□□□ -1.02
USP54-205ENST00000424265 SMIM3Q9BZL3 60 aa8.69□□□□□ -1.02
USP54-205ENST00000424265 RNF150Q9ULK6 438 aa8.69□□□□□ -1.02
USP54-205ENST00000424265 FOXJ3Q9UPW0 622 aa8.69□□□□□ -1.02
USP54-205ENST00000424265 TRAV36DV7A0A075B6V5 113 aa8.69□□□□□ -1.02
USP54-205ENST00000424265 TRBV4-1A0A0J9YWV2 114 aa8.69□□□□□ -1.02
USP54-205ENST00000424265 ARRDC5A6NEK1 342 aa8.69□□□□□ -1.02
USP54-205ENST00000424265 CD59P13987 128 aa8.69□□□□□ -1.02
USP54-205ENST00000424265 IGLV3-21P80748 117 aaPredicted RBP8.69□□□□□ -1.02
USP54-205ENST00000424265 HTD2P86397 168 aa8.69□□□□□ -1.02
USP54-205ENST00000424265 BDH1Q02338 343 aa8.69□□□□□ -1.02
USP54-205ENST00000424265 TPTE2P1Q5T6R2 138 aa8.69□□□□□ -1.02
USP54-205ENST00000424265 ZNF343Q6P1L6 599 aa8.69□□□□□ -1.02
USP54-205ENST00000424265 ZNF322Q6U7Q0 402 aaPredicted RBP8.69□□□□□ -1.02
USP54-205ENST00000424265 FAM89BQ8N5H3 189 aa8.69□□□□□ -1.02
USP54-205ENST00000424265 KLHDC1Q8N7A1 406 aa8.69□□□□□ -1.02
USP54-205ENST00000424265 Q8WTZ3 238 aa8.69□□□□□ -1.02
USP54-205ENST00000424265 PIKFYVEQ9Y2I7 2098 aa8.69□□□□□ -1.02
USP54-205ENST00000424265 PLXNA2O75051 1894 aa8.68□□□□□ -1.02
USP54-205ENST00000424265 A0A1W2PQD3 144 aa8.68□□□□□ -1.02
USP54-205ENST00000424265 SLC22A31A6NKX4 558 aa8.68□□□□□ -1.02
USP54-205ENST00000424265 CYB5AP00167 134 aa8.68□□□□□ -1.02
USP54-205ENST00000424265 CST4P01036 141 aa8.68□□□□□ -1.02
USP54-205ENST00000424265 DPP4P27487 766 aa8.68□□□□□ -1.02
USP54-205ENST00000424265 APOBEC3AP31941 199 aaPredicted RBP8.68□□□□□ -1.02
USP54-205ENST00000424265 C2orf68Q2NKX9 166 aa8.68□□□□□ -1.02
USP54-205ENST00000424265 PET117Q6UWS5 81 aa8.68□□□□□ -1.02
USP54-205ENST00000424265 PRSS41Q7RTY9 318 aa8.68□□□□□ -1.02
USP54-205ENST00000424265 PINX1Q96BK5 328 aaKnown RBP8.68□□□□□ -1.02
USP54-205ENST00000424265 PLEKHA1Q9HB21 404 aa8.68□□□□□ -1.02
USP54-205ENST00000424265 SF3B6Q9Y3B4 125 aaKnown RBP8.68□□□□□ -1.02
USP54-205ENST00000424265 TRAV14DV4A0A0A6YYC5 116 aa8.68□□□□□ -1.02
USP54-205ENST00000424265 TRAV17A0A0B4J275 112 aa8.68□□□□□ -1.02
USP54-205ENST00000424265 SFTPBP07988 381 aa8.68□□□□□ -1.02
USP54-205ENST00000424265 CD1BP29016 333 aa8.68□□□□□ -1.02
USP54-205ENST00000424265 ZFP36L1Q07352 338 aaKnown RBP8.68□□□□□ -1.02
USP54-205ENST00000424265 IL10RAQ13651 578 aa8.68□□□□□ -1.02
USP54-205ENST00000424265 PLA2G2CQ5R387 149 aa8.68□□□□□ -1.02
USP54-205ENST00000424265 MBOAT2Q6ZWT7 520 aa8.68□□□□□ -1.02
USP54-205ENST00000424265 ZNF627Q7L945 461 aa8.68□□□□□ -1.02
USP54-205ENST00000424265 NIT1Q86X76 327 aa8.68□□□□□ -1.02
USP54-205ENST00000424265 ZDHHC19Q8WVZ1 309 aaPredicted RBP8.68□□□□□ -1.02
Retrieved 100 of 20,778 RNA–protein pairs in 93.4 ms