RNA–Protein interactions for RNA: ENST00000422491.6

USP54-204, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 1 (best) BASIC

Gene USP54, Length 2,777 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-204ENST00000422491 REEP6Q96HR9 211 aa9.37□□□□□ -0.91
USP54-204ENST00000422491 BOD1Q96IK1 185 aa9.37□□□□□ -0.91
USP54-204ENST00000422491 FAM71F1Q96KD3 344 aaPredicted RBP9.37□□□□□ -0.91
USP54-204ENST00000422491 TM2D1Q9BX74 207 aa9.37□□□□□ -0.91
USP54-204ENST00000422491 MRPL37Q9BZE1 423 aaKnown RBP9.37□□□□□ -0.91
USP54-204ENST00000422491 TBL1XR1Q9BZK7 514 aa9.37□□□□□ -0.91
USP54-204ENST00000422491 LHFPL6Q9Y693 200 aa9.37□□□□□ -0.91
USP54-204ENST00000422491 WSB1Q9Y6I7 421 aa9.37□□□□□ -0.91
USP54-204ENST00000422491 TNFRSF10CO14798 259 aa9.36□□□□□ -0.91
USP54-204ENST00000422491 ST8SIA3O43173 380 aa9.36□□□□□ -0.91
USP54-204ENST00000422491 GZMBP10144 247 aa9.36□□□□□ -0.91
USP54-204ENST00000422491 RGS19P49795 217 aa9.36□□□□□ -0.91
USP54-204ENST00000422491 ZNF121P58317 390 aaPredicted RBP9.36□□□□□ -0.91
USP54-204ENST00000422491 NUTF2P61970 127 aaKnown RBP9.36□□□□□ -0.91
USP54-204ENST00000422491 OR8G1Q15617 311 aa9.36□□□□□ -0.91
USP54-204ENST00000422491 FBXW12Q6X9E4 464 aa9.36□□□□□ -0.91
USP54-204ENST00000422491 FBXL14Q8N1E6 418 aa9.36□□□□□ -0.91
USP54-204ENST00000422491 RAB24Q969Q5 203 aa9.36□□□□□ -0.91
USP54-204ENST00000422491 DEFB118Q96PH6 123 aa9.36□□□□□ -0.91
USP54-204ENST00000422491 NDUFAF3Q9BU61 184 aa9.36□□□□□ -0.91
USP54-204ENST00000422491 C11orf1Q9H5F2 150 aa9.36□□□□□ -0.91
USP54-204ENST00000422491 CRLF2Q9HC73 371 aa9.36□□□□□ -0.91
USP54-204ENST00000422491 KLHL13Q9P2N7 655 aa9.36□□□□□ -0.91
USP54-204ENST00000422491 AK3Q9UIJ7 227 aa9.36□□□□□ -0.91
USP54-204ENST00000422491 ATXN7O15265 892 aaPredicted RBP9.36□□□□□ -0.91
USP54-204ENST00000422491 APODP05090 189 aa9.36□□□□□ -0.91
USP54-204ENST00000422491 DUSP1P28562 367 aa9.36□□□□□ -0.91
USP54-204ENST00000422491 CSNK1A1P48729 337 aa9.36□□□□□ -0.91
USP54-204ENST00000422491 PPM1FP49593 454 aaPredicted RBP9.36□□□□□ -0.91
USP54-204ENST00000422491 RND2P52198 227 aa9.36□□□□□ -0.91
USP54-204ENST00000422491 HSF1Q00613 529 aa9.36□□□□□ -0.91
USP54-204ENST00000422491 FZD2Q14332 565 aa9.36□□□□□ -0.91
USP54-204ENST00000422491 PPA1Q15181 289 aa9.36□□□□□ -0.91
USP54-204ENST00000422491 KISS1Q15726 138 aa9.36□□□□□ -0.91
USP54-204ENST00000422491 TANGO2Q6ICL3 276 aa9.36□□□□□ -0.91
USP54-204ENST00000422491 C6orf201Q7Z4U5 140 aa9.36□□□□□ -0.91
USP54-204ENST00000422491 ZNF664Q8N3J9 261 aa9.36□□□□□ -0.91
USP54-204ENST00000422491 RNASEH2CQ8TDP1 164 aaKnown RBP9.36□□□□□ -0.91
USP54-204ENST00000422491 ZNF721Q8TF20 911 aa9.36□□□□□ -0.91
USP54-204ENST00000422491 HDHD3Q9BSH5 251 aaPredicted RBP9.36□□□□□ -0.91
USP54-204ENST00000422491 ANXA10Q9UJ72 324 aa9.36□□□□□ -0.91
USP54-204ENST00000422491 LRP4O75096 1905 aa9.36□□□□□ -0.91
USP54-204ENST00000422491 DVL1O14640 695 aa9.35□□□□□ -0.91
USP54-204ENST00000422491 DDAH2O95865 285 aa9.35□□□□□ -0.91
USP54-204ENST00000422491 POU2F2P09086 479 aa9.35□□□□□ -0.91
USP54-204ENST00000422491 DBHP09172 617 aa9.35□□□□□ -0.91
USP54-204ENST00000422491 ATXN8OSP0DMR3 200 aa9.35□□□□□ -0.91
USP54-204ENST00000422491 FGF7P21781 194 aa9.35□□□□□ -0.91
USP54-204ENST00000422491 HOXA6P31267 233 aa9.35□□□□□ -0.91
USP54-204ENST00000422491 CTNNB1P35222 781 aa9.35□□□□□ -0.91
USP54-204ENST00000422491 KIR2DL1P43626 348 aaPredicted RBP9.35□□□□□ -0.91
USP54-204ENST00000422491 ZNF266Q14584 549 aa9.35□□□□□ -0.91
USP54-204ENST00000422491 C4orf17Q53FE4 359 aa9.35□□□□□ -0.91
USP54-204ENST00000422491 COL13A1Q5TAT6 717 aaPredicted RBP9.35□□□□□ -0.91
USP54-204ENST00000422491 TSPO2Q5TGU0 170 aa9.35□□□□□ -0.91
USP54-204ENST00000422491 LIAT1Q6ZQX7 453 aa9.35□□□□□ -0.91
USP54-204ENST00000422491 C1orf87Q8N0U7 546 aa9.35□□□□□ -0.91
USP54-204ENST00000422491 BEND2Q8NDZ0 799 aa9.35□□□□□ -0.91
USP54-204ENST00000422491 OR4D5Q8NGN0 318 aa9.35□□□□□ -0.91
USP54-204ENST00000422491 RTN4IP1Q8WWV3 396 aaPredicted RBP9.35□□□□□ -0.91
USP54-204ENST00000422491 MSI2Q96DH6 328 aaKnown RBP9.35□□□□□ -0.91
USP54-204ENST00000422491 SNX22Q96L94 193 aa9.35□□□□□ -0.91
USP54-204ENST00000422491 NOL4LQ96MY1 436 aaPredicted RBP9.35□□□□□ -0.91
USP54-204ENST00000422491 LANCL2Q9NS86 450 aa9.35□□□□□ -0.91
USP54-204ENST00000422491 PITPNC1Q9UKF7 332 aa9.35□□□□□ -0.91
USP54-204ENST00000422491 WASF3Q9UPY6 502 aa9.35□□□□□ -0.91
USP54-204ENST00000422491 VCANP13611 3396 aa9.35□□□□□ -0.91
USP54-204ENST00000422491 CCDC187A0A096LP49 1063 aa9.35□□□□□ -0.91
USP54-204ENST00000422491 B4DEV8 164 aa9.35□□□□□ -0.91
USP54-204ENST00000422491 TGOLN2O43493 480 aa9.35□□□□□ -0.91
USP54-204ENST00000422491 PGA4P0DJD7 388 aa9.35□□□□□ -0.91
USP54-204ENST00000422491 PGA5P0DJD9 388 aa9.35□□□□□ -0.91
USP54-204ENST00000422491 CASP6P55212 293 aa9.35□□□□□ -0.91
USP54-204ENST00000422491 HLA-DRB3P79483 266 aa9.35□□□□□ -0.91
USP54-204ENST00000422491 ARL6IP1Q15041 203 aa9.35□□□□□ -0.91
USP54-204ENST00000422491 RTL6Q6ICC9 239 aa9.35□□□□□ -0.91
USP54-204ENST00000422491 TCEAL6Q6IPX3 200 aa9.35□□□□□ -0.91
USP54-204ENST00000422491 H1FNTQ75WM6 255 aaPredicted RBP9.35□□□□□ -0.91
USP54-204ENST00000422491 SLC16A14Q7RTX9 510 aa9.35□□□□□ -0.91
USP54-204ENST00000422491 OR6X1Q8NH79 312 aa9.35□□□□□ -0.91
USP54-204ENST00000422491 CLDND2Q8NHS1 167 aa9.35□□□□□ -0.91
USP54-204ENST00000422491 EMC6Q9BV81 110 aa9.35□□□□□ -0.91
USP54-204ENST00000422491 VN1R1Q9GZP7 353 aa9.35□□□□□ -0.91
USP54-204ENST00000422491 IL18BPO95998 194 aa9.35□□□□□ -0.91
USP54-204ENST00000422491 CELA2BP08218 269 aaPredicted RBP9.35□□□□□ -0.91
USP54-204ENST00000422491 GIMD1P0DJR0 217 aa9.35□□□□□ -0.91
USP54-204ENST00000422491 SFTPDP35247 375 aa9.35□□□□□ -0.91
USP54-204ENST00000422491 USF2Q15853 346 aaPredicted RBP9.35□□□□□ -0.91
USP54-204ENST00000422491 OGFOD3Q6PK18 319 aa9.35□□□□□ -0.91
USP54-204ENST00000422491 DOK3Q7L591 496 aa9.35□□□□□ -0.91
USP54-204ENST00000422491 C9orf40Q8IXQ3 194 aa9.35□□□□□ -0.91
USP54-204ENST00000422491 OR2C3Q8N628 320 aa9.35□□□□□ -0.91
USP54-204ENST00000422491 OR14L1PQ8NHC6 308 aa9.35□□□□□ -0.91
USP54-204ENST00000422491 TMEM171Q8WVE6 324 aa9.35□□□□□ -0.91
USP54-204ENST00000422491 TOMM40LQ969M1 308 aa9.35□□□□□ -0.91
USP54-204ENST00000422491 ACTR3CQ9C0K3 210 aaPredicted RBP9.35□□□□□ -0.91
USP54-204ENST00000422491 HIPK2Q9H2X6 1198 aa9.35□□□□□ -0.91
USP54-204ENST00000422491 TMEM242Q9NWH2 141 aa9.35□□□□□ -0.91
USP54-204ENST00000422491 ADAMTS9Q9P2N4 1935 aa9.34□□□□□ -0.91
USP54-204ENST00000422491 A0A087WZY1 265 aa9.34□□□□□ -0.91
Retrieved 100 of 20,778 RNA–protein pairs in 36.8 ms