RNA–Protein interactions for RNA: ENST00000421459.2

VIM-202, Transcript of vimentin, humanhuman

TSL 2

Gene VIM, Length 753 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIM-202ENST00000421459 M0R129 80 aa6.5□□□□□ -1.37
VIM-202ENST00000421459 GSC2O15499 205 aa6.5□□□□□ -1.37
VIM-202ENST00000421459 PEX14O75381 377 aa6.5□□□□□ -1.37
VIM-202ENST00000421459 MMP23AO75900 390 aa6.5□□□□□ -1.37
VIM-202ENST00000421459 NXPH2O95156 264 aa6.5□□□□□ -1.37
VIM-202ENST00000421459 NRASP01111 189 aa6.5□□□□□ -1.37
VIM-202ENST00000421459 IGLV3-1P01715 115 aa6.5□□□□□ -1.37
VIM-202ENST00000421459 CALCBP10092 127 aa6.5□□□□□ -1.37
VIM-202ENST00000421459 PAICSP22234 425 aaKnown RBP6.5□□□□□ -1.37
VIM-202ENST00000421459 SLC2A5P22732 501 aa6.5□□□□□ -1.37
VIM-202ENST00000421459 HOXD3P31249 432 aaPredicted RBP6.5□□□□□ -1.37
VIM-202ENST00000421459 VDAC2P45880 294 aaPredicted RBP6.5□□□□□ -1.37
VIM-202ENST00000421459 EDDM3BP56851 147 aa6.5□□□□□ -1.37
VIM-202ENST00000421459 ESRRGP62508 458 aa6.5□□□□□ -1.37
VIM-202ENST00000421459 COL10A1Q03692 680 aa6.5□□□□□ -1.37
VIM-202ENST00000421459 APOFQ13790 326 aa6.5□□□□□ -1.37
VIM-202ENST00000421459 C16orf89Q6UX73 402 aa6.5□□□□□ -1.37
VIM-202ENST00000421459 CD300LDQ6UXZ3 194 aa6.5□□□□□ -1.37
VIM-202ENST00000421459 LIAT1Q6ZQX7 453 aa6.5□□□□□ -1.37
VIM-202ENST00000421459 TCF23Q7RTU1 214 aa6.5□□□□□ -1.37
VIM-202ENST00000421459 CALHM1Q8IU99 346 aa6.5□□□□□ -1.37
VIM-202ENST00000421459 ASCC1Q8N9N2 400 aaKnown RBP6.5□□□□□ -1.37
VIM-202ENST00000421459 WFDC9Q8NEX5 89 aa6.5□□□□□ -1.37
VIM-202ENST00000421459 OR4F17Q8NGA8 305 aa6.5□□□□□ -1.37
VIM-202ENST00000421459 OR5AU1Q8NGC0 362 aa6.5□□□□□ -1.37
VIM-202ENST00000421459 TRMT10AQ8TBZ6 339 aaKnown RBP6.5□□□□□ -1.37
VIM-202ENST00000421459 RPS4Y2Q8TD47 263 aa6.5□□□□□ -1.37
VIM-202ENST00000421459 GIPC3Q8TF64 312 aa6.5□□□□□ -1.37
VIM-202ENST00000421459 OR4F4Q96R69 305 aa6.5□□□□□ -1.37
VIM-202ENST00000421459 APOL4Q9BPW4 351 aa6.5□□□□□ -1.37
VIM-202ENST00000421459 NRIP2Q9BQI9 281 aa6.5□□□□□ -1.37
VIM-202ENST00000421459 PRSS22Q9GZN4 317 aa6.5□□□□□ -1.37
VIM-202ENST00000421459 ABCB10Q9NRK6 738 aa6.5□□□□□ -1.37
VIM-202ENST00000421459 RASL12Q9NYN1 266 aa6.5□□□□□ -1.37
VIM-202ENST00000421459 IL36RNQ9UBH0 155 aa6.5□□□□□ -1.37
VIM-202ENST00000421459 GTF2A1LQ9UNN4 478 aa6.5□□□□□ -1.37
VIM-202ENST00000421459 HUWE1Q7Z6Z7 4374 aaKnown RBP6.5□□□□□ -1.37
VIM-202ENST00000421459 A0A1B0GTI1 187 aa6.49□□□□□ -1.37
VIM-202ENST00000421459 A0A1W2PPH5 198 aa6.49□□□□□ -1.37
VIM-202ENST00000421459 TMEM82A0PJX8 343 aa6.49□□□□□ -1.37
VIM-202ENST00000421459 OR5B21A6NL26 309 aa6.49□□□□□ -1.37
VIM-202ENST00000421459 J3QT63 122 aa6.49□□□□□ -1.37
VIM-202ENST00000421459 SRSF10O75494 262 aaKnown RBP6.49□□□□□ -1.37
VIM-202ENST00000421459 CST1P01037 141 aa6.49□□□□□ -1.37
VIM-202ENST00000421459 TTRP02766 147 aa6.49□□□□□ -1.37
VIM-202ENST00000421459 IGHV1-8P0DP01 117 aa6.49□□□□□ -1.37
VIM-202ENST00000421459 ERVK11-1P61568 191 aa6.49□□□□□ -1.37
VIM-202ENST00000421459 CDK5Q00535 292 aa6.49□□□□□ -1.37
VIM-202ENST00000421459 CD83Q01151 205 aa6.49□□□□□ -1.37
VIM-202ENST00000421459 SLC34A1Q06495 639 aa6.49□□□□□ -1.37
VIM-202ENST00000421459 EDDM3AQ14507 147 aa6.49□□□□□ -1.37
VIM-202ENST00000421459 ODF4Q2M2E3 257 aa6.49□□□□□ -1.37
VIM-202ENST00000421459 SMIM21Q3B7S5 101 aa6.49□□□□□ -1.37
VIM-202ENST00000421459 ZNF684Q5T5D7 378 aa6.49□□□□□ -1.37
VIM-202ENST00000421459 ZNF626Q68DY1 528 aa6.49□□□□□ -1.37
VIM-202ENST00000421459 LCN8Q6JVE9 175 aa6.49□□□□□ -1.37
VIM-202ENST00000421459 DHFR2Q86XF0 187 aa6.49□□□□□ -1.37
VIM-202ENST00000421459 OR11H6Q8NGC7 330 aa6.49□□□□□ -1.37
VIM-202ENST00000421459 OR52N4Q8NGI2 321 aa6.49□□□□□ -1.37
VIM-202ENST00000421459 OR13D1Q8NGV5 346 aa6.49□□□□□ -1.37
VIM-202ENST00000421459 MALSU1Q96EH3 234 aa6.49□□□□□ -1.37
VIM-202ENST00000421459 CHID1Q9BWS9 393 aa6.49□□□□□ -1.37
VIM-202ENST00000421459 MAGIXQ9H6Y5 334 aa6.49□□□□□ -1.37
VIM-202ENST00000421459 HES4Q9HCC6 221 aa6.49□□□□□ -1.37
VIM-202ENST00000421459 MTCH1Q9NZJ7 389 aa6.49□□□□□ -1.37
VIM-202ENST00000421459 ENPP5Q9UJA9 477 aa6.49□□□□□ -1.37
VIM-202ENST00000421459 SLC22A13Q9Y226 551 aa6.49□□□□□ -1.37
VIM-202ENST00000421459 NOTCH3Q9UM47 2321 aa6.49□□□□□ -1.37
VIM-202ENST00000421459 DYNC2H1Q8NCM8 4307 aaKnown RBP6.48□□□□□ -1.37
VIM-202ENST00000421459 IGKV1-27A0A075B6S5 117 aa6.48□□□□□ -1.37
VIM-202ENST00000421459 hCG_1809904A0A1W2PP81 198 aa6.48□□□□□ -1.37
VIM-202ENST00000421459 A0A1W2PPE2 198 aa6.48□□□□□ -1.37
VIM-202ENST00000421459 FAM230AA0A1W2PPH8 454 aa6.48□□□□□ -1.37
VIM-202ENST00000421459 A0A1W2PR64 198 aa6.48□□□□□ -1.37
VIM-202ENST00000421459 A0A1W2PRV1 198 aa6.48□□□□□ -1.37
VIM-202ENST00000421459 TCRBV4S1A1TA0A5B7 111 aa6.48□□□□□ -1.37
VIM-202ENST00000421459 FAM172BPA6NC97 362 aa6.48□□□□□ -1.37
VIM-202ENST00000421459 B2RBV5 119 aa6.48□□□□□ -1.37
VIM-202ENST00000421459 K7N7A8 449 aa6.48□□□□□ -1.37
VIM-202ENST00000421459 F2RL2O00254 374 aa6.48□□□□□ -1.37
VIM-202ENST00000421459 PRODHO43272 600 aa6.48□□□□□ -1.37
VIM-202ENST00000421459 NOS1APO75052 506 aaPredicted RBP6.48□□□□□ -1.37
VIM-202ENST00000421459 ZNF737O75373 536 aa6.48□□□□□ -1.37
VIM-202ENST00000421459 IGHA1P01876 353 aa6.48□□□□□ -1.37
VIM-202ENST00000421459 LPLP06858 475 aa6.48□□□□□ -1.37
VIM-202ENST00000421459 ZNF728P0DKX0 622 aa6.48□□□□□ -1.37
VIM-202ENST00000421459 PF4V1P10720 104 aa6.48□□□□□ -1.37
VIM-202ENST00000421459 DUSP1P28562 367 aa6.48□□□□□ -1.37
VIM-202ENST00000421459 ACTA2P62736 377 aa6.48□□□□□ -1.37
VIM-202ENST00000421459 ACTG2P63267 376 aa6.48□□□□□ -1.37
VIM-202ENST00000421459 ACTC1P68032 377 aa6.48□□□□□ -1.37
VIM-202ENST00000421459 ACTA1P68133 377 aa6.48□□□□□ -1.37
VIM-202ENST00000421459 BNIP1Q12981 228 aa6.48□□□□□ -1.37
VIM-202ENST00000421459 SNAPC1Q16533 368 aa6.48□□□□□ -1.37
VIM-202ENST00000421459 FAM98BQ52LJ0 330 aaKnown RBP6.48□□□□□ -1.37
VIM-202ENST00000421459 SLC35D3Q5M8T2 416 aa6.48□□□□□ -1.37
VIM-202ENST00000421459 CLVS2Q5SYC1 327 aa6.48□□□□□ -1.37
VIM-202ENST00000421459 UTF1Q5T230 341 aa6.48□□□□□ -1.37
VIM-202ENST00000421459 TMEM42Q69YG0 159 aa6.48□□□□□ -1.37
VIM-202ENST00000421459 CENPVQ7Z7K6 275 aaPredicted RBP6.48□□□□□ -1.37
Retrieved 100 of 20,778 RNA–protein pairs in 41.6 ms