RNA–Protein interactions for RNA: ENST00000405805.5

HMGB1-206, Transcript of high mobility group box 1, humanhuman

APPRIS P1 TSL 2 BASIC

Gene HMGB1, Length 4,199 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1-206ENST00000405805 SLC43A2Q8N370 569 aa10.59□□□□□ -0.71
HMGB1-206ENST00000405805 STT3BQ8TCJ2 826 aa10.59□□□□□ -0.71
HMGB1-206ENST00000405805 SMIM10Q96HG1 83 aa10.59□□□□□ -0.71
HMGB1-206ENST00000405805 SLC7A11Q9UPY5 501 aa10.59□□□□□ -0.71
HMGB1-206ENST00000405805 MTCL1Q9Y4B5 1905 aaKnown RBP10.59□□□□□ -0.71
HMGB1-206ENST00000405805 OR2M5A3KFT3 312 aa10.59□□□□□ -0.71
HMGB1-206ENST00000405805 TLCD2A6NGC4 264 aa10.59□□□□□ -0.71
HMGB1-206ENST00000405805 OR2A4O95047 310 aa10.59□□□□□ -0.71
HMGB1-206ENST00000405805 CX3CR1P49238 355 aa10.59□□□□□ -0.71
HMGB1-206ENST00000405805 UBE2V2Q15819 145 aa10.59□□□□□ -0.71
HMGB1-206ENST00000405805 EXD3Q8N9H8 876 aa10.59□□□□□ -0.71
HMGB1-206ENST00000405805 PTPMT1Q8WUK0 201 aaPredicted RBP10.59□□□□□ -0.71
HMGB1-206ENST00000405805 PIGCQ92535 297 aa10.59□□□□□ -0.71
HMGB1-206ENST00000405805 C14orf144Q96I85 54 aa10.59□□□□□ -0.71
HMGB1-206ENST00000405805 IP6K3Q96PC2 410 aa10.59□□□□□ -0.71
HMGB1-206ENST00000405805 OR2A7Q96R45 310 aa10.59□□□□□ -0.71
HMGB1-206ENST00000405805 MESP1Q9BRJ9 268 aa10.59□□□□□ -0.71
HMGB1-206ENST00000405805 RTN4RQ9BZR6 473 aa10.59□□□□□ -0.71
HMGB1-206ENST00000405805 SMOC1Q9H4F8 434 aa10.59□□□□□ -0.71
HMGB1-206ENST00000405805 METTL1Q9UBP6 276 aaKnown RBP10.59□□□□□ -0.71
HMGB1-206ENST00000405805 HELZP42694 1942 aaKnown RBP10.59□□□□□ -0.71
HMGB1-206ENST00000405805 DVL1P1P54792 670 aaPredicted RBP10.58□□□□□ -0.71
HMGB1-206ENST00000405805 LEMD1Q68G75 181 aa10.58□□□□□ -0.71
HMGB1-206ENST00000405805 ZNF100Q8IYN0 542 aa10.58□□□□□ -0.71
HMGB1-206ENST00000405805 SLC22A18ASQ8N1D0 253 aa10.58□□□□□ -0.71
HMGB1-206ENST00000405805 MR1Q95460 341 aa10.58□□□□□ -0.71
HMGB1-206ENST00000405805 MAGT1Q9H0U3 335 aa10.58□□□□□ -0.71
HMGB1-206ENST00000405805 PRUNE2Q8WUY3 3088 aa10.58□□□□□ -0.72
HMGB1-206ENST00000405805 CEBPZOSA8MTT3 80 aa10.58□□□□□ -0.72
HMGB1-206ENST00000405805 MT-ATP6P00846 226 aa10.58□□□□□ -0.72
HMGB1-206ENST00000405805 IFNA1P01562 189 aa10.58□□□□□ -0.72
HMGB1-206ENST00000405805 CSNK1A1P48729 337 aa10.58□□□□□ -0.72
HMGB1-206ENST00000405805 SUMO1P63165 101 aaKnown RBP10.58□□□□□ -0.72
HMGB1-206ENST00000405805 CEBPEQ15744 281 aa10.58□□□□□ -0.72
HMGB1-206ENST00000405805 NKAIN1Q4KMZ8 207 aa10.58□□□□□ -0.72
HMGB1-206ENST00000405805 ARSJQ5FYB0 599 aaPredicted RBP10.58□□□□□ -0.72
HMGB1-206ENST00000405805 ABLIM2Q6H8Q1 611 aa10.58□□□□□ -0.72
HMGB1-206ENST00000405805 FBXW12Q6X9E4 464 aa10.58□□□□□ -0.72
HMGB1-206ENST00000405805 ZFP62Q8NB50 900 aaPredicted RBP10.58□□□□□ -0.72
HMGB1-206ENST00000405805 CTHRC1Q96CG8 243 aa10.58□□□□□ -0.72
HMGB1-206ENST00000405805 SOX7Q9BT81 388 aa10.58□□□□□ -0.72
HMGB1-206ENST00000405805 HS3ST3A1Q9Y663 406 aa10.58□□□□□ -0.72
HMGB1-206ENST00000405805 TNFSF14O43557 240 aa10.58□□□□□ -0.72
HMGB1-206ENST00000405805 SLC37A1P57057 533 aa10.58□□□□□ -0.72
HMGB1-206ENST00000405805 RPL24P83731 157 aaKnown RBP10.58□□□□□ -0.72
HMGB1-206ENST00000405805 PLAURQ03405 335 aa10.58□□□□□ -0.72
HMGB1-206ENST00000405805 TMEM108Q6UXF1 575 aa10.58□□□□□ -0.72
HMGB1-206ENST00000405805 C6orf201Q7Z4U5 140 aa10.58□□□□□ -0.72
HMGB1-206ENST00000405805 NKAIN3Q8N8D7 197 aa10.58□□□□□ -0.72
HMGB1-206ENST00000405805 OR5AP2Q8NGF4 316 aa10.58□□□□□ -0.72
HMGB1-206ENST00000405805 PLXNA4Q9HCM2 1894 aa10.58□□□□□ -0.72
HMGB1-206ENST00000405805 A0A1W2PPC1 479 aa10.58□□□□□ -0.72
HMGB1-206ENST00000405805 SPRY1O43609 319 aaPredicted RBP10.58□□□□□ -0.72
HMGB1-206ENST00000405805 PDGFBP01127 241 aaPredicted RBP10.58□□□□□ -0.72
HMGB1-206ENST00000405805 PATE4P0C8F1 98 aa10.58□□□□□ -0.72
HMGB1-206ENST00000405805 VSIG8P0DPA2 414 aa10.58□□□□□ -0.72
HMGB1-206ENST00000405805 MGST1P10620 155 aaKnown RBP10.58□□□□□ -0.72
HMGB1-206ENST00000405805 CDX1P47902 265 aaPredicted RBP10.58□□□□□ -0.72
HMGB1-206ENST00000405805 RRADP55042 308 aa10.58□□□□□ -0.72
HMGB1-206ENST00000405805 C17orf67Q0P5P2 114 aa10.58□□□□□ -0.72
HMGB1-206ENST00000405805 LBHQ53QV2 105 aaPredicted RBP10.58□□□□□ -0.72
HMGB1-206ENST00000405805 Q6ZN92 141 aa10.58□□□□□ -0.72
HMGB1-206ENST00000405805 SLC36A1Q7Z2H8 476 aa10.58□□□□□ -0.72
HMGB1-206ENST00000405805 ERASQ7Z444 233 aa10.58□□□□□ -0.72
HMGB1-206ENST00000405805 OR56B2PQ8NGI1 322 aa10.58□□□□□ -0.72
HMGB1-206ENST00000405805 OR2G3Q8NGZ4 309 aa10.58□□□□□ -0.72
HMGB1-206ENST00000405805 BORCS8Q96FH0 119 aa10.58□□□□□ -0.72
HMGB1-206ENST00000405805 PIGLQ9Y2B2 252 aa10.58□□□□□ -0.72
HMGB1-206ENST00000405805 RAD51DO75771 328 aa10.57□□□□□ -0.72
HMGB1-206ENST00000405805 FOLR1P15328 257 aa10.57□□□□□ -0.72
HMGB1-206ENST00000405805 RPL12P30050 165 aaKnown RBP10.57□□□□□ -0.72
HMGB1-206ENST00000405805 TNFRSF9Q07011 255 aa10.57□□□□□ -0.72
HMGB1-206ENST00000405805 RTN4RL2Q86UN3 420 aa10.57□□□□□ -0.72
HMGB1-206ENST00000405805 OR6C1Q96RD1 312 aa10.57□□□□□ -0.72
HMGB1-206ENST00000405805 ZNF552Q9H707 407 aaPredicted RBP10.57□□□□□ -0.72
HMGB1-206ENST00000405805 HSBP1L1C9JCN9 74 aa10.57□□□□□ -0.72
HMGB1-206ENST00000405805 H2AFB1P0C5Y9 115 aa10.57□□□□□ -0.72
HMGB1-206ENST00000405805 ASAH2BP0C7U1 165 aa10.57□□□□□ -0.72
HMGB1-206ENST00000405805 GGTLC2Q14390 218 aa10.57□□□□□ -0.72
HMGB1-206ENST00000405805 DEGS2Q6QHC5 323 aa10.57□□□□□ -0.72
HMGB1-206ENST00000405805 GPR137CQ8N3F9 429 aa10.57□□□□□ -0.72
HMGB1-206ENST00000405805 IL1F10Q8WWZ1 152 aa10.57□□□□□ -0.72
HMGB1-206ENST00000405805 RPUSD4Q96CM3 377 aaKnown RBP10.57□□□□□ -0.72
HMGB1-206ENST00000405805 SARGQ9BW04 601 aa10.57□□□□□ -0.72
HMGB1-206ENST00000405805 VN1R1Q9GZP7 353 aa10.57□□□□□ -0.72
HMGB1-206ENST00000405805 OSGIN2Q9Y236 505 aa10.57□□□□□ -0.72
HMGB1-206ENST00000405805 MMACHCQ9Y4U1 282 aa10.57□□□□□ -0.72
HMGB1-206ENST00000405805 PHF1O43189 567 aaPredicted RBP10.57□□□□□ -0.72
HMGB1-206ENST00000405805 CRHP06850 196 aa10.57□□□□□ -0.72
HMGB1-206ENST00000405805 RPS18P62269 152 aaKnown RBP10.57□□□□□ -0.72
HMGB1-206ENST00000405805 RELQ04864 619 aaPredicted RBP10.57□□□□□ -0.72
HMGB1-206ENST00000405805 HABP2Q14520 560 aaPredicted RBP10.57□□□□□ -0.72
HMGB1-206ENST00000405805 TMEM128Q5BJH2 165 aa10.57□□□□□ -0.72
HMGB1-206ENST00000405805 LCN15Q6UWW0 184 aa10.57□□□□□ -0.72
HMGB1-206ENST00000405805 ZNF429Q86V71 674 aa10.57□□□□□ -0.72
HMGB1-206ENST00000405805 OR2D3Q8NGH3 330 aa10.57□□□□□ -0.72
HMGB1-206ENST00000405805 OR2AE1Q8NHA4 323 aa10.57□□□□□ -0.72
HMGB1-206ENST00000405805 SRPK3Q9UPE1 567 aa10.57□□□□□ -0.72
HMGB1-206ENST00000405805 B3GALT5Q9Y2C3 310 aa10.57□□□□□ -0.72
HMGB1-206ENST00000405805 A0A1W2PPC4 97 aa10.56□□□□□ -0.72
Retrieved 100 of 20,778 RNA–protein pairs in 80.2 ms