RNA–Protein interactions for RNA: ENST00000397643.3

CUX2-202, Transcript of cut like homeobox 2, humanhuman

TSL 1 (best)

Gene CUX2, Length 890 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX2-202ENST00000397643 LYG1Q8N1E2 194 aa13.12□□□□□ -0.31
CUX2-202ENST00000397643 PHF21AQ96BD5 680 aa13.12□□□□□ -0.31
CUX2-202ENST00000397643 AMELYQ99218 206 aa13.12□□□□□ -0.31
CUX2-202ENST00000397643 MROQ9BYG7 248 aa13.12□□□□□ -0.31
CUX2-202ENST00000397643 C14orf119Q9NWQ9 140 aa13.12□□□□□ -0.31
CUX2-202ENST00000397643 IKZF2Q9UKS7 526 aa13.12□□□□□ -0.31
CUX2-202ENST00000397643 DIMT1Q9UNQ2 313 aaKnown RBP13.12□□□□□ -0.31
CUX2-202ENST00000397643 MYRFQ9Y2G1 1151 aa13.12□□□□□ -0.31
CUX2-202ENST00000397643 EXOSC1Q9Y3B2 195 aaKnown RBP13.12□□□□□ -0.31
CUX2-202ENST00000397643 MAB21L2Q9Y586 359 aa13.12□□□□□ -0.31
CUX2-202ENST00000397643 KIR2DP1A0A0G2JNF4 349 aaPredicted RBP13.11□□□□□ -0.31
CUX2-202ENST00000397643 ZNF254O75437 659 aa13.11□□□□□ -0.31
CUX2-202ENST00000397643 KRT8P05787 483 aa13.11□□□□□ -0.31
CUX2-202ENST00000397643 MYL12AP19105 171 aa13.11□□□□□ -0.31
CUX2-202ENST00000397643 CRHBPP24387 322 aa13.11□□□□□ -0.31
CUX2-202ENST00000397643 HSD11B1P28845 292 aa13.11□□□□□ -0.31
CUX2-202ENST00000397643 OPRL1P41146 370 aa13.11□□□□□ -0.31
CUX2-202ENST00000397643 ROM1Q03395 351 aa13.11□□□□□ -0.31
CUX2-202ENST00000397643 ACSM1Q08AH1 577 aa13.11□□□□□ -0.31
CUX2-202ENST00000397643 IKZF1Q13422 519 aa13.11□□□□□ -0.31
CUX2-202ENST00000397643 VAX1Q5SQQ9 334 aa13.11□□□□□ -0.31
CUX2-202ENST00000397643 DRAM2Q6UX65 266 aa13.11□□□□□ -0.31
CUX2-202ENST00000397643 PLEKHG7Q6ZR37 379 aa13.11□□□□□ -0.31
CUX2-202ENST00000397643 SLC36A1Q7Z2H8 476 aa13.11□□□□□ -0.31
CUX2-202ENST00000397643 ZNF679Q8IYX0 411 aa13.11□□□□□ -0.31
CUX2-202ENST00000397643 OR4C13Q8NGP0 309 aa13.11□□□□□ -0.31
CUX2-202ENST00000397643 C12orf43Q96C57 262 aaKnown RBP13.11□□□□□ -0.31
CUX2-202ENST00000397643 OR8B4Q96RC9 309 aa13.11□□□□□ -0.31
CUX2-202ENST00000397643 KCNJ15Q99712 375 aa13.11□□□□□ -0.31
CUX2-202ENST00000397643 JAM3Q9BX67 310 aa13.11□□□□□ -0.31
CUX2-202ENST00000397643 RANBP3Q9H6Z4 567 aaPredicted RBP13.11□□□□□ -0.31
CUX2-202ENST00000397643 NIPAL2Q9H841 368 aa13.11□□□□□ -0.31
CUX2-202ENST00000397643 FKBP14Q9NWM8 211 aa13.11□□□□□ -0.31
CUX2-202ENST00000397643 METTL15A6NJ78 407 aa13.1□□□□□ -0.31
CUX2-202ENST00000397643 ADARB2-AS1A8MUL3 147 aa13.1□□□□□ -0.31
CUX2-202ENST00000397643 NDUFB3O43676 98 aa13.1□□□□□ -0.31
CUX2-202ENST00000397643 CHST1O43916 411 aa13.1□□□□□ -0.31
CUX2-202ENST00000397643 SULT1C4O75897 302 aa13.1□□□□□ -0.31
CUX2-202ENST00000397643 APOC1P02654 83 aa13.1□□□□□ -0.31
CUX2-202ENST00000397643 CDK1P06493 297 aa13.1□□□□□ -0.31
CUX2-202ENST00000397643 RIDAP52758 137 aaKnown RBP13.1□□□□□ -0.31
CUX2-202ENST00000397643 ACTA2P62736 377 aa13.1□□□□□ -0.31
CUX2-202ENST00000397643 ACTG2P63267 376 aa13.1□□□□□ -0.31
CUX2-202ENST00000397643 ZNF85Q03923 595 aa13.1□□□□□ -0.31
CUX2-202ENST00000397643 MZT1Q08AG7 82 aa13.1□□□□□ -0.31
CUX2-202ENST00000397643 GALEQ14376 348 aa13.1□□□□□ -0.31
CUX2-202ENST00000397643 LY6EQ16553 131 aa13.1□□□□□ -0.31
CUX2-202ENST00000397643 ATPAF1Q5TC12 328 aaPredicted RBP13.1□□□□□ -0.31
CUX2-202ENST00000397643 FAM220AQ7Z4H9 259 aa13.1□□□□□ -0.31
CUX2-202ENST00000397643 KCTD20Q7Z5Y7 419 aa13.1□□□□□ -0.31
CUX2-202ENST00000397643 LHFPL3Q86UP9 236 aa13.1□□□□□ -0.31
CUX2-202ENST00000397643 OR1M1Q8NGA1 313 aa13.1□□□□□ -0.31
CUX2-202ENST00000397643 OR2T6Q8NHC8 308 aa13.1□□□□□ -0.31
CUX2-202ENST00000397643 RORBQ92753 470 aa13.1□□□□□ -0.31
CUX2-202ENST00000397643 SPSB4Q96A44 273 aa13.1□□□□□ -0.31
CUX2-202ENST00000397643 SSX3Q99909 188 aa13.1□□□□□ -0.31
CUX2-202ENST00000397643 TTTY10Q9BZA0 68 aa13.1□□□□□ -0.31
CUX2-202ENST00000397643 TLNRD1Q9H1K6 362 aa13.1□□□□□ -0.31
CUX2-202ENST00000397643 MMP28Q9H239 520 aa13.1□□□□□ -0.31
CUX2-202ENST00000397643 DUSP21Q9H596 190 aa13.1□□□□□ -0.31
CUX2-202ENST00000397643 PPP1R3EQ9H7J1 279 aa13.1□□□□□ -0.31
CUX2-202ENST00000397643 ERVK13-1Q9NX77 482 aa13.1□□□□□ -0.31
CUX2-202ENST00000397643 M0R1W7 72 aa13.09□□□□□ -0.31
CUX2-202ENST00000397643 PSMD9O00233 223 aa13.09□□□□□ -0.31
CUX2-202ENST00000397643 RGS10O43665 173 aa13.09□□□□□ -0.31
CUX2-202ENST00000397643 VSIG10L2P0DP72 767 aa13.09□□□□□ -0.31
CUX2-202ENST00000397643 SLC2A1P11166 492 aa13.09□□□□□ -0.31
CUX2-202ENST00000397643 DCTDP32321 178 aa13.09□□□□□ -0.31
CUX2-202ENST00000397643 PRKXP51817 358 aa13.09□□□□□ -0.31
CUX2-202ENST00000397643 SLC35A2P78381 396 aa13.09□□□□□ -0.31
CUX2-202ENST00000397643 LRRC10Q5BKY1 277 aa13.09□□□□□ -0.31
CUX2-202ENST00000397643 NCR3LG1Q68D85 454 aa13.09□□□□□ -0.31
CUX2-202ENST00000397643 TMPRSS11AQ6ZMR5 421 aa13.09□□□□□ -0.31
CUX2-202ENST00000397643 SSX6Q7RTT6 188 aa13.09□□□□□ -0.31
CUX2-202ENST00000397643 EGFL6Q8IUX8 553 aa13.09□□□□□ -0.31
CUX2-202ENST00000397643 YIPF7Q8N8F6 280 aa13.09□□□□□ -0.31
CUX2-202ENST00000397643 SGCDQ92629 289 aa13.09□□□□□ -0.31
CUX2-202ENST00000397643 ALG8Q9BVK2 526 aa13.09□□□□□ -0.31
CUX2-202ENST00000397643 OPA3Q9H6K4 179 aa13.09□□□□□ -0.31
CUX2-202ENST00000397643 METTL8Q9H825 291 aaKnown RBP13.09□□□□□ -0.31
CUX2-202ENST00000397643 SP140LQ9H930 580 aa13.09□□□□□ -0.31
CUX2-202ENST00000397643 LRP12Q9Y561 859 aa13.09□□□□□ -0.31
CUX2-202ENST00000397643 TFF1P04155 84 aa13.08□□□□□ -0.32
CUX2-202ENST00000397643 PAX6P26367 422 aa13.08□□□□□ -0.32
CUX2-202ENST00000397643 ETV1P50549 477 aa13.08□□□□□ -0.32
CUX2-202ENST00000397643 GABARAPL2P60520 117 aa13.08□□□□□ -0.32
CUX2-202ENST00000397643 DGUOKQ16854 277 aa13.08□□□□□ -0.32
CUX2-202ENST00000397643 LRRC75BQ2VPJ9 315 aa13.08□□□□□ -0.32
CUX2-202ENST00000397643 NSUN5P1Q3KNT7 163 aa13.08□□□□□ -0.32
CUX2-202ENST00000397643 C11orf87Q6NUJ2 197 aa13.08□□□□□ -0.32
CUX2-202ENST00000397643 SYS1Q8N2H4 156 aa13.08□□□□□ -0.32
CUX2-202ENST00000397643 OR5T2Q8NGG2 359 aa13.08□□□□□ -0.32
CUX2-202ENST00000397643 OR8S1Q8NH09 359 aa13.08□□□□□ -0.32
CUX2-202ENST00000397643 WIPF2Q8TF74 440 aaPredicted RBP13.08□□□□□ -0.32
CUX2-202ENST00000397643 H1FXQ92522 213 aaKnown RBP13.08□□□□□ -0.32
CUX2-202ENST00000397643 CCDC90BQ9GZT6 254 aa13.08□□□□□ -0.32
CUX2-202ENST00000397643 MEGF9Q9H1U4 602 aa13.08□□□□□ -0.32
CUX2-202ENST00000397643 EXOSC5Q9NQT4 235 aaKnown RBP eCLIP13.08□□□□□ -0.32
CUX2-202ENST00000397643 PAK1IP1Q9NWT1 392 aaPredicted RBP13.08□□□□□ -0.32
CUX2-202ENST00000397643 MRM2Q9UI43 246 aaKnown RBP13.08□□□□□ -0.32
Retrieved 100 of 20,778 RNA–protein pairs in 59 ms