RNA–Protein interactions for RNA: ENST00000394536.4

PCDH1-203, Transcript of protocadherin 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene PCDH1, Length 3,827 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PCDH1-203ENST00000394536 PLPP5Q8NEB5 264 aa14.19□□□□□ -0.14
PCDH1-203ENST00000394536 UBALD1Q8TB05 177 aa14.19□□□□□ -0.14
PCDH1-203ENST00000394536 NELFAQ9H3P2 528 aa14.19□□□□□ -0.14
PCDH1-203ENST00000394536 IFT22Q9H7X7 185 aa14.19□□□□□ -0.14
PCDH1-203ENST00000394536 TRAV20A0A0B4J274 112 aa14.18□□□□□ -0.14
PCDH1-203ENST00000394536 A0A1B0GTQ1 180 aa14.18□□□□□ -0.14
PCDH1-203ENST00000394536 A0A1W2PPH5 198 aa14.18□□□□□ -0.14
PCDH1-203ENST00000394536 ZNF724A8MTY0 619 aa14.18□□□□□ -0.14
PCDH1-203ENST00000394536 TMEM14DPA8MWL7 114 aa14.18□□□□□ -0.14
PCDH1-203ENST00000394536 CELA2AP08217 269 aa14.18□□□□□ -0.14
PCDH1-203ENST00000394536 KLK2P20151 261 aa14.18□□□□□ -0.14
PCDH1-203ENST00000394536 PTAFRP25105 342 aa14.18□□□□□ -0.14
PCDH1-203ENST00000394536 AWAT1Q58HT5 328 aa14.18□□□□□ -0.14
PCDH1-203ENST00000394536 RHBDD2Q6NTF9 364 aa14.18□□□□□ -0.14
PCDH1-203ENST00000394536 OR6X1Q8NH79 312 aa14.18□□□□□ -0.14
PCDH1-203ENST00000394536 ANXA10Q9UJ72 324 aa14.18□□□□□ -0.14
PCDH1-203ENST00000394536 FAM24AA6NFZ4 105 aa14.18□□□□□ -0.14
PCDH1-203ENST00000394536 H7C1Q1 480 aa14.18□□□□□ -0.14
PCDH1-203ENST00000394536 MRPS34P82930 218 aaKnown RBP14.18□□□□□ -0.14
PCDH1-203ENST00000394536 MKXQ8IYA7 352 aa14.18□□□□□ -0.14
PCDH1-203ENST00000394536 TMEM123Q8N131 208 aa14.18□□□□□ -0.14
PCDH1-203ENST00000394536 HAS2Q92819 552 aa14.18□□□□□ -0.14
PCDH1-203ENST00000394536 ZNF501Q96CX3 271 aaPredicted RBP14.18□□□□□ -0.14
PCDH1-203ENST00000394536 GPHA2Q96T91 129 aa14.18□□□□□ -0.14
PCDH1-203ENST00000394536 UNKLQ9H9P5 680 aaKnown RBP14.18□□□□□ -0.14
PCDH1-203ENST00000394536 ZNF319Q9P2F9 582 aa14.18□□□□□ -0.14
PCDH1-203ENST00000394536 RCL1Q9Y2P8 373 aaKnown RBP14.18□□□□□ -0.14
PCDH1-203ENST00000394536 ZFP92A6NM28 416 aa14.18□□□□□ -0.14
PCDH1-203ENST00000394536 H2AFB1P0C5Y9 115 aa14.18□□□□□ -0.14
PCDH1-203ENST00000394536 THBS4P35443 961 aa14.18□□□□□ -0.14
PCDH1-203ENST00000394536 TLE1Q04724 770 aa14.18□□□□□ -0.14
PCDH1-203ENST00000394536 RDH5Q92781 318 aa14.18□□□□□ -0.14
PCDH1-203ENST00000394536 SAT2Q96F10 170 aaPredicted RBP14.18□□□□□ -0.14
PCDH1-203ENST00000394536 RNF126Q9BV68 326 aa14.18□□□□□ -0.14
PCDH1-203ENST00000394536 DNAJB11Q9UBS4 358 aa14.18□□□□□ -0.14
PCDH1-203ENST00000394536 GHRLQ9UBU3 117 aa14.18□□□□□ -0.14
PCDH1-203ENST00000394536 C7orf77A4D0Y5 90 aa14.17□□□□□ -0.14
PCDH1-203ENST00000394536 CDRT15L2A8MXV6 281 aa14.17□□□□□ -0.14
PCDH1-203ENST00000394536 MASP2O00187 686 aa14.17□□□□□ -0.14
PCDH1-203ENST00000394536 HS3ST1O14792 307 aa14.17□□□□□ -0.14
PCDH1-203ENST00000394536 GEMIN2O14893 280 aaKnown RBP14.17□□□□□ -0.14
PCDH1-203ENST00000394536 NPIPB7O75200 414 aa14.17□□□□□ -0.14
PCDH1-203ENST00000394536 PABPC1L2AQ5JQF8 200 aa14.17□□□□□ -0.14
PCDH1-203ENST00000394536 LYSMD4Q5XG99 296 aa14.17□□□□□ -0.14
PCDH1-203ENST00000394536 LILRB2Q8N423 598 aa14.17□□□□□ -0.14
PCDH1-203ENST00000394536 OIT3Q8WWZ8 545 aa14.17□□□□□ -0.14
PCDH1-203ENST00000394536 RNF166Q96A37 237 aaPredicted RBP14.17□□□□□ -0.14
PCDH1-203ENST00000394536 AK3Q9UIJ7 227 aa14.17□□□□□ -0.14
PCDH1-203ENST00000394536 SPTA1P02549 2419 aa14.17□□□□□ -0.14
PCDH1-203ENST00000394536 GJE1A6NN92 205 aa14.17□□□□□ -0.14
PCDH1-203ENST00000394536 DHRS7CA6NNS2 312 aa14.17□□□□□ -0.14
PCDH1-203ENST00000394536 FTCDNL1E5RQL4 147 aa14.17□□□□□ -0.14
PCDH1-203ENST00000394536 SRFP11831 508 aa14.17□□□□□ -0.14
PCDH1-203ENST00000394536 FAM166AQ6J272 317 aa14.17□□□□□ -0.14
PCDH1-203ENST00000394536 PFDN5Q99471 154 aa14.17□□□□□ -0.14
PCDH1-203ENST00000394536 SLC2A8Q9NY64 477 aa14.17□□□□□ -0.14
PCDH1-203ENST00000394536 DIDO1Q9BTC0 2240 aaKnown RBP14.17□□□□□ -0.14
PCDH1-203ENST00000394536 IGKV3D-11A0A0A0MRZ8 115 aa14.17□□□□□ -0.14
PCDH1-203ENST00000394536 MRPL33O75394 65 aaKnown RBP14.17□□□□□ -0.14
PCDH1-203ENST00000394536 EDN3P14138 238 aa14.17□□□□□ -0.14
PCDH1-203ENST00000394536 NHLH2Q02577 135 aa14.17□□□□□ -0.14
PCDH1-203ENST00000394536 DMWDQ09019 674 aa14.17□□□□□ -0.14
PCDH1-203ENST00000394536 CEACAM16Q2WEN9 425 aa14.17□□□□□ -0.14
PCDH1-203ENST00000394536 PLPPR5Q32ZL2 321 aa14.17□□□□□ -0.14
PCDH1-203ENST00000394536 PIGYQ3MUY2 71 aa14.17□□□□□ -0.14
PCDH1-203ENST00000394536 EIF4E3Q8N5X7 224 aaKnown RBP14.17□□□□□ -0.14
PCDH1-203ENST00000394536 CALHM2Q9HA72 323 aa14.17□□□□□ -0.14
PCDH1-203ENST00000394536 C19orf12Q9NSK7 152 aa14.17□□□□□ -0.14
PCDH1-203ENST00000394536 CDH23Q9H251 3354 aa14.17□□□□□ -0.14
PCDH1-203ENST00000394536 SHANK1Q9Y566 2161 aa14.16□□□□□ -0.14
PCDH1-203ENST00000394536 LOC102725191A0A1B0GVB3 256 aa14.16□□□□□ -0.14
PCDH1-203ENST00000394536 CLPSP04118 112 aa14.16□□□□□ -0.14
PCDH1-203ENST00000394536 RPL23AP62750 156 aaKnown RBP14.16□□□□□ -0.14
PCDH1-203ENST00000394536 HMGN3Q15651 99 aa14.16□□□□□ -0.14
PCDH1-203ENST00000394536 USF2Q15853 346 aaPredicted RBP14.16□□□□□ -0.14
PCDH1-203ENST00000394536 VAX1Q5SQQ9 334 aa14.16□□□□□ -0.14
PCDH1-203ENST00000394536 OR5AS1Q8N127 324 aa14.16□□□□□ -0.14
PCDH1-203ENST00000394536 OSR2Q8N2R0 312 aa14.16□□□□□ -0.14
PCDH1-203ENST00000394536 ZNF561Q8N587 486 aa14.16□□□□□ -0.14
PCDH1-203ENST00000394536 SLC25A31Q9H0C2 315 aa14.16□□□□□ -0.14
PCDH1-203ENST00000394536 AKIRIN1Q9H9L7 192 aaPredicted RBP14.16□□□□□ -0.14
PCDH1-203ENST00000394536 VAMP5O95183 116 aa14.16□□□□□ -0.14
PCDH1-203ENST00000394536 TIAF1O95411 115 aa14.16□□□□□ -0.14
PCDH1-203ENST00000394536 ZNF32P17041 273 aa14.16□□□□□ -0.14
PCDH1-203ENST00000394536 TCN2P20062 427 aa14.16□□□□□ -0.14
PCDH1-203ENST00000394536 GSK3AP49840 483 aa14.16□□□□□ -0.14
PCDH1-203ENST00000394536 POLR2GP62487 172 aaKnown RBP eCLIP14.16□□□□□ -0.14
PCDH1-203ENST00000394536 C4orf17Q53FE4 359 aa14.16□□□□□ -0.14
PCDH1-203ENST00000394536 OR11L1Q8NGX0 322 aa14.16□□□□□ -0.14
PCDH1-203ENST00000394536 CCDC74BQ96LY2 380 aa14.16□□□□□ -0.14
PCDH1-203ENST00000394536 TRAPPC2LH3BP13 241 aa14.16□□□□□ -0.14
PCDH1-203ENST00000394536 HLA-HP01893 362 aa14.16□□□□□ -0.14
PCDH1-203ENST00000394536 CCL2P13500 99 aa14.16□□□□□ -0.14
PCDH1-203ENST00000394536 PTGER4P35408 488 aa14.16□□□□□ -0.14
PCDH1-203ENST00000394536 FOLR3P41439 243 aa14.16□□□□□ -0.14
PCDH1-203ENST00000394536 ZP4Q12836 540 aa14.16□□□□□ -0.14
PCDH1-203ENST00000394536 ZNF266Q14584 549 aa14.16□□□□□ -0.14
PCDH1-203ENST00000394536 UBE2V2Q15819 145 aa14.16□□□□□ -0.14
PCDH1-203ENST00000394536 VASH2Q86V25 355 aa14.16□□□□□ -0.14
PCDH1-203ENST00000394536 ZNF100Q8IYN0 542 aa14.16□□□□□ -0.14
Retrieved 100 of 20,778 RNA–protein pairs in 29.9 ms