RNA–Protein interactions for RNA: ENST00000372407.4

PTPRF-203, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 2

Gene PTPRF, Length 4,600 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-203ENST00000372407 LIMK1P53667 647 aa10.17□□□□□ -0.78
PTPRF-203ENST00000372407 MLF1P58340 268 aa10.17□□□□□ -0.78
PTPRF-203ENST00000372407 GNB1P62873 340 aa10.17□□□□□ -0.78
PTPRF-203ENST00000372407 TRA2AQ13595 282 aaKnown RBP eCLIP10.17□□□□□ -0.78
PTPRF-203ENST00000372407 PDCD1Q15116 288 aa10.17□□□□□ -0.78
PTPRF-203ENST00000372407 NHLRC1Q6VVB1 395 aa10.17□□□□□ -0.78
PTPRF-203ENST00000372407 OR2C3Q8N628 320 aa10.17□□□□□ -0.78
PTPRF-203ENST00000372407 PTP4A1Q93096 173 aa10.17□□□□□ -0.78
PTPRF-203ENST00000372407 NXF2Q9GZY0 626 aaKnown RBP10.17□□□□□ -0.78
PTPRF-203ENST00000372407 CNTD2Q9H8S5 307 aa10.17□□□□□ -0.78
PTPRF-203ENST00000372407 MMP24Q9Y5R2 645 aa10.17□□□□□ -0.78
PTPRF-203ENST00000372407 PSME4Q14997 1843 aa10.17□□□□□ -0.78
PTPRF-203ENST00000372407 TRGV5A0A0B4J1U4 118 aa10.17□□□□□ -0.78
PTPRF-203ENST00000372407 UBE2L5PA0A1B0GUS4 154 aa10.17□□□□□ -0.78
PTPRF-203ENST00000372407 MKRN2OSH3BPM6 223 aa10.17□□□□□ -0.78
PTPRF-203ENST00000372407 NGFP01138 241 aa10.17□□□□□ -0.78
PTPRF-203ENST00000372407 SEMG1P04279 462 aa10.17□□□□□ -0.78
PTPRF-203ENST00000372407 C9orf152Q5JTZ5 239 aa10.17□□□□□ -0.78
PTPRF-203ENST00000372407 FAHD2BQ6P2I3 314 aaPredicted RBP10.17□□□□□ -0.78
PTPRF-203ENST00000372407 TRILQ7L0X0 811 aa10.17□□□□□ -0.78
PTPRF-203ENST00000372407 C20orf196Q8IYI0 205 aa10.17□□□□□ -0.78
PTPRF-203ENST00000372407 FAHD2AQ96GK7 314 aa10.17□□□□□ -0.78
PTPRF-203ENST00000372407 POM121L2Q96KW2 1035 aa10.17□□□□□ -0.78
PTPRF-203ENST00000372407 SLC35B3Q9H1N7 401 aa10.17□□□□□ -0.78
PTPRF-203ENST00000372407 P4HTMQ9NXG6 502 aa10.17□□□□□ -0.78
PTPRF-203ENST00000372407 M0R1X1 148 aa10.17□□□□□ -0.78
PTPRF-203ENST00000372407 HEXAP06865 529 aa10.17□□□□□ -0.78
PTPRF-203ENST00000372407 GGNBP1Q5YKI7 109 aa10.17□□□□□ -0.78
PTPRF-203ENST00000372407 OR2A2Q6IF42 318 aa10.17□□□□□ -0.78
PTPRF-203ENST00000372407 HSD17B13Q7Z5P4 300 aaPredicted RBP10.17□□□□□ -0.78
PTPRF-203ENST00000372407 LSMEM1Q8N8F7 131 aa10.17□□□□□ -0.78
PTPRF-203ENST00000372407 OR5C1Q8NGR4 320 aa10.17□□□□□ -0.78
PTPRF-203ENST00000372407 GPR137Q96N19 417 aa10.17□□□□□ -0.78
PTPRF-203ENST00000372407 CTNNBIP1Q9NSA3 81 aaPredicted RBP10.17□□□□□ -0.78
PTPRF-203ENST00000372407 DBX1A6NMT0 343 aa10.16□□□□□ -0.78
PTPRF-203ENST00000372407 GSTZ1O43708 216 aaPredicted RBP10.16□□□□□ -0.78
PTPRF-203ENST00000372407 CYC1P08574 325 aa10.16□□□□□ -0.78
PTPRF-203ENST00000372407 CLEC9AQ6UXN8 241 aa10.16□□□□□ -0.78
PTPRF-203ENST00000372407 KLHDC1Q8N7A1 406 aa10.16□□□□□ -0.78
PTPRF-203ENST00000372407 OR4D11Q8NGI4 311 aa10.16□□□□□ -0.78
PTPRF-203ENST00000372407 UBALD1Q8TB05 177 aa10.16□□□□□ -0.78
PTPRF-203ENST00000372407 NAA60Q9H7X0 242 aa10.16□□□□□ -0.78
PTPRF-203ENST00000372407 ZFP64Q9NPA5 681 aa10.16□□□□□ -0.78
PTPRF-203ENST00000372407 ZNF835Q9Y2P0 537 aa10.16□□□□□ -0.78
PTPRF-203ENST00000372407 ST8SIA5O15466 376 aa10.16□□□□□ -0.78
PTPRF-203ENST00000372407 RD3LP0DJH9 198 aa10.16□□□□□ -0.78
PTPRF-203ENST00000372407 CNN1P51911 297 aaKnown RBP10.16□□□□□ -0.78
PTPRF-203ENST00000372407 PSG6Q00889 435 aa10.16□□□□□ -0.78
PTPRF-203ENST00000372407 IL13RA2Q14627 380 aa10.16□□□□□ -0.78
PTPRF-203ENST00000372407 ISXQ2M1V0 245 aa10.16□□□□□ -0.78
PTPRF-203ENST00000372407 MRGPREQ86SM8 312 aa10.16□□□□□ -0.78
PTPRF-203ENST00000372407 C10orf111Q8N326 155 aa10.16□□□□□ -0.78
PTPRF-203ENST00000372407 TAAR9Q96RI9 348 aa10.16□□□□□ -0.78
PTPRF-203ENST00000372407 CLCF1Q9UBD9 225 aa10.16□□□□□ -0.78
PTPRF-203ENST00000372407 V9GYH0 126 aa10.16□□□□□ -0.78
PTPRF-203ENST00000372407 ONECUT2O95948 504 aa10.16□□□□□ -0.78
PTPRF-203ENST00000372407 RAB5AP20339 215 aa10.16□□□□□ -0.78
PTPRF-203ENST00000372407 PPP1CBP62140 327 aa10.16□□□□□ -0.78
PTPRF-203ENST00000372407 FZD5Q13467 585 aa10.16□□□□□ -0.78
PTPRF-203ENST00000372407 PABPC1L2AQ5JQF8 200 aa10.16□□□□□ -0.78
PTPRF-203ENST00000372407 PRR27Q6MZM9 219 aa10.16□□□□□ -0.78
PTPRF-203ENST00000372407 ZNF774Q6NX45 483 aa10.16□□□□□ -0.78
PTPRF-203ENST00000372407 ZNF66Q6ZN08 573 aa10.16□□□□□ -0.78
PTPRF-203ENST00000372407 VASH2Q86V25 355 aa10.16□□□□□ -0.78
PTPRF-203ENST00000372407 UBAC2Q8NBM4 344 aa10.16□□□□□ -0.78
PTPRF-203ENST00000372407 MIXL1Q9H2W2 232 aa10.16□□□□□ -0.78
PTPRF-203ENST00000372407 TAAR3PQ9P1P4 343 aa10.16□□□□□ -0.78
PTPRF-203ENST00000372407 TRAV17A0A0B4J275 112 aa10.16□□□□□ -0.78
PTPRF-203ENST00000372407 M0R296 226 aa10.16□□□□□ -0.78
PTPRF-203ENST00000372407 COX7A2P2O60397 106 aa10.16□□□□□ -0.78
PTPRF-203ENST00000372407 CDC14BO60729 498 aa10.16□□□□□ -0.78
PTPRF-203ENST00000372407 F2RP25116 425 aa10.16□□□□□ -0.78
PTPRF-203ENST00000372407 SIGLEC14Q08ET2 396 aa10.16□□□□□ -0.78
PTPRF-203ENST00000372407 RNPS1Q15287 305 aaKnown RBP10.16□□□□□ -0.78
PTPRF-203ENST00000372407 ACER2Q5QJU3 275 aa10.16□□□□□ -0.78
PTPRF-203ENST00000372407 GUSBP11Q6P575 273 aa10.16□□□□□ -0.78
PTPRF-203ENST00000372407 GNB4Q9HAV0 340 aa10.16□□□□□ -0.78
PTPRF-203ENST00000372407 FBXL17Q9UF56 701 aa10.16□□□□□ -0.78
PTPRF-203ENST00000372407 SIPA1L1O43166 1804 aa10.15□□□□□ -0.78
PTPRF-203ENST00000372407 HRASP01112 189 aa10.15□□□□□ -0.78
PTPRF-203ENST00000372407 TNFRSF1AP19438 455 aa10.15□□□□□ -0.78
PTPRF-203ENST00000372407 SDHBP21912 280 aa10.15□□□□□ -0.78
PTPRF-203ENST00000372407 IRF3Q14653 427 aa10.15□□□□□ -0.78
PTPRF-203ENST00000372407 OR1C1Q15619 314 aa10.15□□□□□ -0.78
PTPRF-203ENST00000372407 GVQW1Q8N7I0 195 aa10.15□□□□□ -0.78
PTPRF-203ENST00000372407 NPEPL1Q8NDH3 523 aa10.15□□□□□ -0.78
PTPRF-203ENST00000372407 VSTM2LQ96N03 204 aa10.15□□□□□ -0.78
PTPRF-203ENST00000372407 ADAT1Q9BUB4 502 aaKnown RBP10.15□□□□□ -0.78
PTPRF-203ENST00000372407 TMEM9BQ9NQ34 198 aa10.15□□□□□ -0.78
PTPRF-203ENST00000372407 FLRT3Q9NZU0 649 aa10.15□□□□□ -0.78
PTPRF-203ENST00000372407 AKAP6Q13023 2319 aa10.15□□□□□ -0.78
PTPRF-203ENST00000372407 OR4C45A6NMZ5 311 aa10.15□□□□□ -0.78
PTPRF-203ENST00000372407 PLA2G10O15496 165 aa10.15□□□□□ -0.78
PTPRF-203ENST00000372407 ADAM20O43506 726 aa10.15□□□□□ -0.78
PTPRF-203ENST00000372407 GABRA1P14867 456 aa10.15□□□□□ -0.78
PTPRF-203ENST00000372407 ERVFC1-1P60608 527 aa10.15□□□□□ -0.78
PTPRF-203ENST00000372407 SURF2Q15527 256 aaPredicted RBP10.15□□□□□ -0.78
PTPRF-203ENST00000372407 C16orf47Q6ZP98 133 aaPredicted RBP10.15□□□□□ -0.78
PTPRF-203ENST00000372407 PNPLA5Q7Z6Z6 429 aaPredicted RBP10.15□□□□□ -0.78
PTPRF-203ENST00000372407 ANKRD37Q7Z713 158 aa10.15□□□□□ -0.78
Retrieved 100 of 20,778 RNA–protein pairs in 56.1 ms