RNA–Protein interactions for RNA: ENST00000339872.8

HMGB1-202, Transcript of high mobility group box 1, humanhuman

APPRIS P1 TSL 2 BASIC

Gene HMGB1, Length 2,319 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1-202ENST00000339872 RBM11P57052 281 aaKnown RBP11.46□□□□□ -0.57
HMGB1-202ENST00000339872 GNG3P63215 75 aa11.46□□□□□ -0.57
HMGB1-202ENST00000339872 PSG7Q13046 419 aa11.46□□□□□ -0.57
HMGB1-202ENST00000339872 MEF2DQ14814 521 aa11.46□□□□□ -0.57
HMGB1-202ENST00000339872 ST3GAL2Q16842 350 aa11.46□□□□□ -0.57
HMGB1-202ENST00000339872 ALKBH6Q3KRA9 238 aa11.46□□□□□ -0.57
HMGB1-202ENST00000339872 SCGB2B2Q4G0G5 96 aa11.46□□□□□ -0.57
HMGB1-202ENST00000339872 IDO2Q6ZQW0 420 aa11.46□□□□□ -0.57
HMGB1-202ENST00000339872 DRAXINQ8NBI3 349 aaPredicted RBP11.46□□□□□ -0.57
HMGB1-202ENST00000339872 MED28Q9H204 178 aa11.46□□□□□ -0.57
HMGB1-202ENST00000339872 RANGRFQ9HD47 186 aaPredicted RBP11.46□□□□□ -0.57
HMGB1-202ENST00000339872 POU2F3Q9UKI9 436 aa11.46□□□□□ -0.57
HMGB1-202ENST00000339872 PLEKHA6Q9Y2H5 1048 aa11.46□□□□□ -0.57
HMGB1-202ENST00000339872 PRAF2O60831 178 aa11.46□□□□□ -0.58
HMGB1-202ENST00000339872 RLN1P04808 185 aa11.46□□□□□ -0.58
HMGB1-202ENST00000339872 ZNF735P0CB33 412 aa11.46□□□□□ -0.58
HMGB1-202ENST00000339872 CALCRP30988 508 aa11.46□□□□□ -0.58
HMGB1-202ENST00000339872 HAGHLQ6PII5 290 aaPredicted RBP11.46□□□□□ -0.58
HMGB1-202ENST00000339872 UNQ6494/PRO21346Q6UXR6 183 aa11.46□□□□□ -0.58
HMGB1-202ENST00000339872 SAXO1Q8IYX7 474 aa11.46□□□□□ -0.58
HMGB1-202ENST00000339872 FAM169BQ8N8A8 192 aa11.46□□□□□ -0.58
HMGB1-202ENST00000339872 ZCCHC14Q8WYQ9 949 aaKnown RBP11.46□□□□□ -0.58
HMGB1-202ENST00000339872 FBXW5Q969U6 566 aa11.46□□□□□ -0.58
HMGB1-202ENST00000339872 MUCL1Q96DR8 90 aa11.46□□□□□ -0.58
HMGB1-202ENST00000339872 MARS2Q96GW9 593 aaKnown RBP11.46□□□□□ -0.58
HMGB1-202ENST00000339872 DMRTB1Q96MA1 342 aa11.46□□□□□ -0.58
HMGB1-202ENST00000339872 SLC6A7Q99884 636 aa11.46□□□□□ -0.58
HMGB1-202ENST00000339872 OCSTAMPQ9BR26 566 aa11.46□□□□□ -0.58
HMGB1-202ENST00000339872 ADAT1Q9BUB4 502 aaKnown RBP11.46□□□□□ -0.58
HMGB1-202ENST00000339872 PIGMQ9H3S5 423 aa11.46□□□□□ -0.58
HMGB1-202ENST00000339872 NPDC1Q9NQX5 325 aaPredicted RBP11.46□□□□□ -0.58
HMGB1-202ENST00000339872 SCP2D1Q9UJQ7 156 aa11.46□□□□□ -0.58
HMGB1-202ENST00000339872 ANAPC10Q9UM13 185 aa11.46□□□□□ -0.58
HMGB1-202ENST00000339872 MAP1BP46821 2468 aaKnown RBP11.45□□□□□ -0.58
HMGB1-202ENST00000339872 A0A1B0GUH1 482 aa11.45□□□□□ -0.58
HMGB1-202ENST00000339872 IQCF6A8MYZ5 107 aa11.45□□□□□ -0.58
HMGB1-202ENST00000339872 DISC1C4P0D8 188 aa11.45□□□□□ -0.58
HMGB1-202ENST00000339872 M0R1B8 84 aa11.45□□□□□ -0.58
HMGB1-202ENST00000339872 SELEP16581 610 aa11.45□□□□□ -0.58
HMGB1-202ENST00000339872 CBX5P45973 191 aa11.45□□□□□ -0.58
HMGB1-202ENST00000339872 SNU13P55769 128 aaKnown RBP11.45□□□□□ -0.58
HMGB1-202ENST00000339872 FAM27E3Q08E93 113 aa11.45□□□□□ -0.58
HMGB1-202ENST00000339872 PPA1Q15181 289 aa11.45□□□□□ -0.58
HMGB1-202ENST00000339872 IGFBP7Q16270 282 aa11.45□□□□□ -0.58
HMGB1-202ENST00000339872 ZNF573Q86YE8 665 aa11.45□□□□□ -0.58
HMGB1-202ENST00000339872 MKXQ8IYA7 352 aa11.45□□□□□ -0.58
HMGB1-202ENST00000339872 OR10AD1Q8NGE0 317 aa11.45□□□□□ -0.58
HMGB1-202ENST00000339872 OR4K15Q8NH41 348 aa11.45□□□□□ -0.58
HMGB1-202ENST00000339872 FYTTD1Q96QD9 318 aaKnown RBP11.45□□□□□ -0.58
HMGB1-202ENST00000339872 ST6GALNAC5Q9BVH7 336 aa11.45□□□□□ -0.58
HMGB1-202ENST00000339872 RTL8AQ9BWD3 113 aa11.45□□□□□ -0.58
HMGB1-202ENST00000339872 BCL2L14Q9BZR8 327 aa11.45□□□□□ -0.58
HMGB1-202ENST00000339872 ZNF701Q9NV72 531 aaPredicted RBP11.45□□□□□ -0.58
HMGB1-202ENST00000339872 TRAPPC2LH3BP13 241 aa11.44□□□□□ -0.58
HMGB1-202ENST00000339872 AKR7A2O43488 359 aa11.44□□□□□ -0.58
HMGB1-202ENST00000339872 SYNGR1O43759 233 aa11.44□□□□□ -0.58
HMGB1-202ENST00000339872 PMP2P02689 132 aa11.44□□□□□ -0.58
HMGB1-202ENST00000339872 TBPP20226 339 aa11.44□□□□□ -0.58
HMGB1-202ENST00000339872 CHATP28329 748 aa11.44□□□□□ -0.58
HMGB1-202ENST00000339872 NAAAQ02083 359 aa11.44□□□□□ -0.58
HMGB1-202ENST00000339872 KLRB1Q12918 225 aa11.44□□□□□ -0.58
HMGB1-202ENST00000339872 PDCD1Q15116 288 aa11.44□□□□□ -0.58
HMGB1-202ENST00000339872 FCN2Q15485 313 aa11.44□□□□□ -0.58
HMGB1-202ENST00000339872 MRGPRGQ86SM5 289 aa11.44□□□□□ -0.58
HMGB1-202ENST00000339872 MAFIPQ8WZ33 124 aa11.44□□□□□ -0.58
HMGB1-202ENST00000339872 EMG1Q92979 244 aaKnown RBP11.44□□□□□ -0.58
HMGB1-202ENST00000339872 MICU1Q9BPX6 476 aa11.44□□□□□ -0.58
HMGB1-202ENST00000339872 SEC22CQ9BRL7 303 aa11.44□□□□□ -0.58
HMGB1-202ENST00000339872 FAAP24Q9BTP7 215 aa11.44□□□□□ -0.58
HMGB1-202ENST00000339872 MOV10Q9HCE1 1003 aaKnown RBP11.44□□□□□ -0.58
HMGB1-202ENST00000339872 MTCH1Q9NZJ7 389 aa11.44□□□□□ -0.58
HMGB1-202ENST00000339872 ZNF230Q9UIE0 474 aaPredicted RBP11.44□□□□□ -0.58
HMGB1-202ENST00000339872 HSF4Q9ULV5 492 aa11.44□□□□□ -0.58
HMGB1-202ENST00000339872 RP1L1Q8IWN7 2480 aaPredicted RBP11.44□□□□□ -0.58
HMGB1-202ENST00000339872 HEATR1Q9H583 2144 aaKnown RBP11.44□□□□□ -0.58
HMGB1-202ENST00000339872 F8VVB4 439 aa11.44□□□□□ -0.58
HMGB1-202ENST00000339872 F8VWA3 439 aa11.44□□□□□ -0.58
HMGB1-202ENST00000339872 SSNA1O43805 119 aa11.44□□□□□ -0.58
HMGB1-202ENST00000339872 CA11O75493 328 aa11.44□□□□□ -0.58
HMGB1-202ENST00000339872 HPXP02790 462 aa11.44□□□□□ -0.58
HMGB1-202ENST00000339872 NAT1P18440 290 aa11.44□□□□□ -0.58
HMGB1-202ENST00000339872 AMY2BP19961 511 aa11.44□□□□□ -0.58
HMGB1-202ENST00000339872 MICBQ29980 383 aa11.44□□□□□ -0.58
HMGB1-202ENST00000339872 METTL11BQ5VVY1 283 aa11.44□□□□□ -0.58
HMGB1-202ENST00000339872 TMEM200AQ86VY9 491 aa11.44□□□□□ -0.58
HMGB1-202ENST00000339872 PRRT1Q99946 306 aa11.44□□□□□ -0.58
HMGB1-202ENST00000339872 SULT4A1Q9BR01 284 aa11.44□□□□□ -0.58
HMGB1-202ENST00000339872 HDHD3Q9BSH5 251 aaPredicted RBP11.44□□□□□ -0.58
HMGB1-202ENST00000339872 FZR1Q9UM11 496 aa11.44□□□□□ -0.58
HMGB1-202ENST00000339872 OR7C1O76099 320 aaPredicted RBP11.43□□□□□ -0.58
HMGB1-202ENST00000339872 IFNA6P05013 189 aa11.43□□□□□ -0.58
HMGB1-202ENST00000339872 MECP2P51608 486 aaKnown RBP11.43□□□□□ -0.58
HMGB1-202ENST00000339872 NKX2-5P52952 324 aaPredicted RBP11.43□□□□□ -0.58
HMGB1-202ENST00000339872 MRPS15P82914 257 aaKnown RBP11.43□□□□□ -0.58
HMGB1-202ENST00000339872 ELP2Q6IA86 826 aa11.43□□□□□ -0.58
HMGB1-202ENST00000339872 BRICD5Q6PL45 260 aa11.43□□□□□ -0.58
HMGB1-202ENST00000339872 GLDNQ6ZMI3 551 aaPredicted RBP11.43□□□□□ -0.58
HMGB1-202ENST00000339872 HOGA1Q86XE5 327 aa11.43□□□□□ -0.58
HMGB1-202ENST00000339872 Q8NFD4 153 aa11.43□□□□□ -0.58
HMGB1-202ENST00000339872 SLC25A21Q9BQT8 299 aaPredicted RBP11.43□□□□□ -0.58
Retrieved 100 of 20,778 RNA–protein pairs in 33.9 ms