RNA–Protein interactions for RNA: ENST00000331433.4

CLCNKA-201, Transcript of chloride voltage-gated channel Ka, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene CLCNKA, Length 2,475 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLCNKA-201ENST00000331433 BHLHE23Q8NDY6 225 aa12.88□□□□□ -0.35
CLCNKA-201ENST00000331433 LOXL4Q96JB6 756 aa12.88□□□□□ -0.35
CLCNKA-201ENST00000331433 SULT4A1Q9BR01 284 aa12.88□□□□□ -0.35
CLCNKA-201ENST00000331433 RGCCQ9H4X1 137 aa12.88□□□□□ -0.35
CLCNKA-201ENST00000331433 ZSCAN5BA6NJL1 495 aa12.87□□□□□ -0.35
CLCNKA-201ENST00000331433 CA11O75493 328 aa12.87□□□□□ -0.35
CLCNKA-201ENST00000331433 ZNF205O95201 554 aa12.87□□□□□ -0.35
CLCNKA-201ENST00000331433 HLA-HP01893 362 aa12.87□□□□□ -0.35
CLCNKA-201ENST00000331433 PGAM2P15259 253 aa12.87□□□□□ -0.35
CLCNKA-201ENST00000331433 RPS2P15880 293 aaKnown RBP12.87□□□□□ -0.35
CLCNKA-201ENST00000331433 ARPC4P59998 168 aa12.87□□□□□ -0.35
CLCNKA-201ENST00000331433 OR8B8Q15620 311 aa12.87□□□□□ -0.35
CLCNKA-201ENST00000331433 FBXL14Q8N1E6 418 aa12.87□□□□□ -0.35
CLCNKA-201ENST00000331433 INO80EQ8NBZ0 244 aaPredicted RBP12.87□□□□□ -0.35
CLCNKA-201ENST00000331433 CPNE2Q96FN4 548 aaPredicted RBP12.87□□□□□ -0.35
CLCNKA-201ENST00000331433 LINC00052Q96N35 136 aa12.87□□□□□ -0.35
CLCNKA-201ENST00000331433 ZNF2Q9BSG1 426 aaPredicted RBP12.87□□□□□ -0.35
CLCNKA-201ENST00000331433 PFDN2Q9UHV9 154 aa12.87□□□□□ -0.35
CLCNKA-201ENST00000331433 ZNF391Q9UJN7 358 aa12.87□□□□□ -0.35
CLCNKA-201ENST00000331433 FAM221AA4D161 298 aa12.87□□□□□ -0.35
CLCNKA-201ENST00000331433 ZNF503-AS2A6NEH8 195 aa12.87□□□□□ -0.35
CLCNKA-201ENST00000331433 PPA1Q15181 289 aa12.87□□□□□ -0.35
CLCNKA-201ENST00000331433 ATP1A1-AS1Q5TC04 95 aa12.87□□□□□ -0.35
CLCNKA-201ENST00000331433 RTL6Q6ICC9 239 aa12.87□□□□□ -0.35
CLCNKA-201ENST00000331433 ZNF100Q8IYN0 542 aa12.87□□□□□ -0.35
CLCNKA-201ENST00000331433 DCUN1D4Q92564 292 aa12.87□□□□□ -0.35
CLCNKA-201ENST00000331433 C1QTNF5Q9BXJ0 243 aa12.87□□□□□ -0.35
CLCNKA-201ENST00000331433 NMES1Q9C002 83 aa12.87□□□□□ -0.35
CLCNKA-201ENST00000331433 ANXA10Q9UJ72 324 aa12.87□□□□□ -0.35
CLCNKA-201ENST00000331433 ZNF816-ZNF321PA0A0X1KG74 233 aa12.86□□□□□ -0.35
CLCNKA-201ENST00000331433 H0YIZ8 118 aa12.86□□□□□ -0.35
CLCNKA-201ENST00000331433 SYNGR4O95473 234 aa12.86□□□□□ -0.35
CLCNKA-201ENST00000331433 CHATP28329 748 aa12.86□□□□□ -0.35
CLCNKA-201ENST00000331433 PDZK1IP1Q13113 114 aa12.86□□□□□ -0.35
CLCNKA-201ENST00000331433 AIMP2Q13155 320 aaKnown RBP12.86□□□□□ -0.35
CLCNKA-201ENST00000331433 ASCL4Q6XD76 172 aa12.86□□□□□ -0.35
CLCNKA-201ENST00000331433 OR10AD1Q8NGE0 317 aa12.86□□□□□ -0.35
CLCNKA-201ENST00000331433 OR10C1Q96KK4 312 aa12.86□□□□□ -0.35
CLCNKA-201ENST00000331433 CMSS1Q9BQ75 279 aaKnown RBP12.86□□□□□ -0.35
CLCNKA-201ENST00000331433 RNF126Q9BV68 326 aa12.86□□□□□ -0.35
CLCNKA-201ENST00000331433 PRRG4Q9BZD6 226 aa12.86□□□□□ -0.35
CLCNKA-201ENST00000331433 MED9Q9NWA0 146 aa12.86□□□□□ -0.35
CLCNKA-201ENST00000331433 SLC7A11Q9UPY5 501 aa12.86□□□□□ -0.35
CLCNKA-201ENST00000331433 KMT2EQ8IZD2 1858 aa12.86□□□□□ -0.35
CLCNKA-201ENST00000331433 ZNF850A8MQ14 1090 aa12.86□□□□□ -0.35
CLCNKA-201ENST00000331433 LGALS8O00214 317 aa12.86□□□□□ -0.35
CLCNKA-201ENST00000331433 PTGER4P35408 488 aa12.86□□□□□ -0.35
CLCNKA-201ENST00000331433 FUT6P51993 359 aa12.86□□□□□ -0.35
CLCNKA-201ENST00000331433 UNQ6126/PRO20091Q6UXV3 157 aa12.86□□□□□ -0.35
CLCNKA-201ENST00000331433 CALHM1Q8IU99 346 aa12.86□□□□□ -0.35
CLCNKA-201ENST00000331433 OR51F2Q8NH61 342 aa12.86□□□□□ -0.35
CLCNKA-201ENST00000331433 SUN5Q8TC36 379 aa12.86□□□□□ -0.35
CLCNKA-201ENST00000331433 LIME1Q9H400 295 aa12.86□□□□□ -0.35
CLCNKA-201ENST00000331433 RAB18Q9NP72 206 aa12.86□□□□□ -0.35
CLCNKA-201ENST00000331433 COQ3Q9NZJ6 369 aa12.86□□□□□ -0.35
CLCNKA-201ENST00000331433 GPR160Q9UJ42 338 aa12.86□□□□□ -0.35
CLCNKA-201ENST00000331433 SHANK1Q9Y566 2161 aa12.86□□□□□ -0.35
CLCNKA-201ENST00000331433 F5H0A9 414 aaPredicted RBP12.85□□□□□ -0.35
CLCNKA-201ENST00000331433 XRCC2O43543 280 aa12.85□□□□□ -0.35
CLCNKA-201ENST00000331433 MEOX1P50221 254 aa12.85□□□□□ -0.35
CLCNKA-201ENST00000331433 OSR2Q8N2R0 312 aa12.85□□□□□ -0.35
CLCNKA-201ENST00000331433 RRNAD1Q96FB5 475 aaKnown RBP12.85□□□□□ -0.35
CLCNKA-201ENST00000331433 LINC00470Q9BZP3 86 aa12.85□□□□□ -0.35
CLCNKA-201ENST00000331433 PRDM14Q9GZV8 571 aa12.85□□□□□ -0.35
CLCNKA-201ENST00000331433 METTL8Q9H825 291 aaKnown RBP12.85□□□□□ -0.35
CLCNKA-201ENST00000331433 ACKR4Q9NPB9 350 aa12.85□□□□□ -0.35
CLCNKA-201ENST00000331433 PARPBPQ9NWS1 579 aa12.85□□□□□ -0.35
CLCNKA-201ENST00000331433 RASL12Q9NYN1 266 aa12.85□□□□□ -0.35
CLCNKA-201ENST00000331433 CRIM1Q9NZV1 1036 aa12.85□□□□□ -0.35
CLCNKA-201ENST00000331433 HSF4Q9ULV5 492 aa12.85□□□□□ -0.35
CLCNKA-201ENST00000331433 C14orf166Q9Y224 244 aaKnown RBP12.85□□□□□ -0.35
CLCNKA-201ENST00000331433 ST3GAL6Q9Y274 331 aa12.85□□□□□ -0.35
CLCNKA-201ENST00000331433 C5orf49A4QMS7 147 aa12.85□□□□□ -0.35
CLCNKA-201ENST00000331433 FCGR3AP08637 254 aa12.85□□□□□ -0.35
CLCNKA-201ENST00000331433 HOXB5P09067 269 aa12.85□□□□□ -0.35
CLCNKA-201ENST00000331433 OR5H8P0DN80 308 aa12.85□□□□□ -0.35
CLCNKA-201ENST00000331433 NRN1LQ496H8 165 aa12.85□□□□□ -0.35
CLCNKA-201ENST00000331433 IL22RA1Q8N6P7 574 aa12.85□□□□□ -0.35
CLCNKA-201ENST00000331433 SPSB4Q96A44 273 aa12.85□□□□□ -0.35
CLCNKA-201ENST00000331433 LIPGQ9Y5X9 500 aa12.85□□□□□ -0.35
CLCNKA-201ENST00000331433 A0A0B4J2A0 478 aa12.84□□□□□ -0.35
CLCNKA-201ENST00000331433 RRP8O43159 456 aaKnown RBP12.84□□□□□ -0.35
CLCNKA-201ENST00000331433 SP1P08047 785 aa12.84□□□□□ -0.35
CLCNKA-201ENST00000331433 CYCSP99999 105 aaKnown RBP12.84□□□□□ -0.35
CLCNKA-201ENST00000331433 SURF2Q15527 256 aaPredicted RBP12.84□□□□□ -0.35
CLCNKA-201ENST00000331433 COLCA1Q6ZS62 124 aa12.84□□□□□ -0.35
CLCNKA-201ENST00000331433 SREK1IP1Q8N9Q2 155 aaPredicted RBP12.84□□□□□ -0.35
CLCNKA-201ENST00000331433 OR56B2PQ8NGI1 322 aa12.84□□□□□ -0.35
CLCNKA-201ENST00000331433 SLC25A32Q9H2D1 315 aa12.84□□□□□ -0.35
CLCNKA-201ENST00000331433 SHPKQ9UHJ6 478 aa12.84□□□□□ -0.35
CLCNKA-201ENST00000331433 EP300Q09472 2414 aaPredicted RBP12.84□□□□□ -0.35
CLCNKA-201ENST00000331433 CD79AP11912 226 aa12.84□□□□□ -0.35
CLCNKA-201ENST00000331433 NPBWR2P48146 333 aa12.84□□□□□ -0.35
CLCNKA-201ENST00000331433 SLC25A26Q70HW3 274 aa12.84□□□□□ -0.35
CLCNKA-201ENST00000331433 ZNF611Q8N823 705 aa12.84□□□□□ -0.35
CLCNKA-201ENST00000331433 PXT1Q8NFP0 134 aa12.84□□□□□ -0.35
CLCNKA-201ENST00000331433 MARS2Q96GW9 593 aaKnown RBP12.84□□□□□ -0.35
CLCNKA-201ENST00000331433 ARPC5LQ9BPX5 153 aa12.84□□□□□ -0.35
CLCNKA-201ENST00000331433 PAPOLGQ9BWT3 736 aaKnown RBP12.84□□□□□ -0.35
CLCNKA-201ENST00000331433 OR5AC2Q9NZP5 309 aa12.84□□□□□ -0.35
Retrieved 100 of 20,778 RNA–protein pairs in 74.5 ms