RNA–Protein interactions for RNA: ENST00000325307.11

HMGB3-201, Transcript of high mobility group box 3, humanhuman

APPRIS P2 TSL 1 (best) BASIC

Gene HMGB3, Length 3,560 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB3-201ENST00000325307 ATP23Q9Y6H3 246 aa8.6□□□□□ -1.03
HMGB3-201ENST00000325307 SLC17A2O00624 439 aa8.6□□□□□ -1.03
HMGB3-201ENST00000325307 CA6P23280 308 aa8.6□□□□□ -1.03
HMGB3-201ENST00000325307 SRP9P49458 86 aaKnown RBP8.6□□□□□ -1.03
HMGB3-201ENST00000325307 HOXA1P49639 335 aaPredicted RBP8.6□□□□□ -1.03
HMGB3-201ENST00000325307 MTCP1P56278 107 aa8.6□□□□□ -1.03
HMGB3-201ENST00000325307 RPS23P62266 143 aaKnown RBP8.6□□□□□ -1.03
HMGB3-201ENST00000325307 SORDQ00796 357 aa8.6□□□□□ -1.03
HMGB3-201ENST00000325307 PSG7Q13046 419 aa8.6□□□□□ -1.03
HMGB3-201ENST00000325307 PLA2G7Q13093 441 aa8.6□□□□□ -1.03
HMGB3-201ENST00000325307 TRIQKQ629K1 86 aa8.6□□□□□ -1.03
HMGB3-201ENST00000325307 ZNF529Q6P280 563 aa8.6□□□□□ -1.03
HMGB3-201ENST00000325307 PNLDC1Q8NA58 520 aaKnown RBP8.6□□□□□ -1.03
HMGB3-201ENST00000325307 OR6M1Q8NGM8 313 aa8.6□□□□□ -1.03
HMGB3-201ENST00000325307 PLPPR2Q96GM1 343 aa8.6□□□□□ -1.03
HMGB3-201ENST00000325307 CNTD2Q9H8S5 307 aa8.6□□□□□ -1.03
HMGB3-201ENST00000325307 ABRACLQ9P1F3 81 aa8.6□□□□□ -1.03
HMGB3-201ENST00000325307 MYEF2Q9P2K5 600 aaKnown RBP8.6□□□□□ -1.03
HMGB3-201ENST00000325307 ADAM30Q9UKF2 790 aa8.6□□□□□ -1.03
HMGB3-201ENST00000325307 AKR7A2O43488 359 aa8.59□□□□□ -1.03
HMGB3-201ENST00000325307 LILRA1O75019 489 aa8.59□□□□□ -1.03
HMGB3-201ENST00000325307 TSC22D2O75157 780 aa8.59□□□□□ -1.03
HMGB3-201ENST00000325307 TUBG1P23258 451 aa8.59□□□□□ -1.03
HMGB3-201ENST00000325307 KISS1Q15726 138 aa8.59□□□□□ -1.03
HMGB3-201ENST00000325307 ALKBH6Q3KRA9 238 aa8.59□□□□□ -1.03
HMGB3-201ENST00000325307 AWAT2Q6E213 333 aa8.59□□□□□ -1.03
HMGB3-201ENST00000325307 C1orf174Q8IYL3 243 aa8.59□□□□□ -1.03
HMGB3-201ENST00000325307 ZDHHC23Q8IYP9 409 aa8.59□□□□□ -1.03
HMGB3-201ENST00000325307 OR51D1Q8NGF3 324 aa8.59□□□□□ -1.03
HMGB3-201ENST00000325307 OR8S1Q8NH09 359 aa8.59□□□□□ -1.03
HMGB3-201ENST00000325307 SPSB1Q96BD6 273 aa8.59□□□□□ -1.03
HMGB3-201ENST00000325307 HAVCR1Q96D42 359 aa8.59□□□□□ -1.03
HMGB3-201ENST00000325307 POM121Q96HA1 1249 aa8.59□□□□□ -1.03
HMGB3-201ENST00000325307 METTL17Q9H7H0 456 aaPredicted RBP8.59□□□□□ -1.03
HMGB3-201ENST00000325307 ELL3Q9HB65 397 aaPredicted RBP8.59□□□□□ -1.03
HMGB3-201ENST00000325307 TUBG2Q9NRH3 451 aa8.59□□□□□ -1.03
HMGB3-201ENST00000325307 CRIM1Q9NZV1 1036 aa8.59□□□□□ -1.03
HMGB3-201ENST00000325307 CBY1Q9Y3M2 126 aa8.59□□□□□ -1.03
HMGB3-201ENST00000325307 ARSBP15848 533 aa8.59□□□□□ -1.03
HMGB3-201ENST00000325307 AGAP20933 346 aa8.59□□□□□ -1.03
HMGB3-201ENST00000325307 SELENOVP59797 346 aa8.59□□□□□ -1.03
HMGB3-201ENST00000325307 RNF144BQ7Z419 303 aa8.59□□□□□ -1.03
HMGB3-201ENST00000325307 SYNPRQ8TBG9 265 aa8.59□□□□□ -1.03
HMGB3-201ENST00000325307 YIPF5Q969M3 257 aa8.59□□□□□ -1.03
HMGB3-201ENST00000325307 FAM3DQ96BQ1 224 aa8.59□□□□□ -1.03
HMGB3-201ENST00000325307 S100A13Q99584 98 aa8.59□□□□□ -1.03
HMGB3-201ENST00000325307 THAP7Q9BT49 309 aaPredicted RBP8.59□□□□□ -1.03
HMGB3-201ENST00000325307 PURGQ9UJV8 347 aaKnown RBP8.59□□□□□ -1.03
HMGB3-201ENST00000325307 ANKHD1Q8IWZ3 2542 aaKnown RBP8.59□□□□□ -1.03
HMGB3-201ENST00000325307 GLRXP35754 106 aa8.58□□□□□ -1.04
HMGB3-201ENST00000325307 RBP2P50120 134 aa8.58□□□□□ -1.04
HMGB3-201ENST00000325307 DGCR2P98153 550 aa8.58□□□□□ -1.04
HMGB3-201ENST00000325307 GPR176Q14439 515 aa8.58□□□□□ -1.04
HMGB3-201ENST00000325307 TMEM42Q69YG0 159 aa8.58□□□□□ -1.04
HMGB3-201ENST00000325307 TEX261Q6UWH6 196 aa8.58□□□□□ -1.04
HMGB3-201ENST00000325307 ANGPTL5Q86XS5 388 aa8.58□□□□□ -1.04
HMGB3-201ENST00000325307 CMTM4Q8IZR5 234 aa8.58□□□□□ -1.04
HMGB3-201ENST00000325307 OR4D6Q8NGJ1 314 aa8.58□□□□□ -1.04
HMGB3-201ENST00000325307 UBASH3BQ8TF42 649 aa8.58□□□□□ -1.04
HMGB3-201ENST00000325307 CPNE2Q96FN4 548 aaPredicted RBP8.58□□□□□ -1.04
HMGB3-201ENST00000325307 SYT3Q9BQG1 590 aa8.58□□□□□ -1.04
HMGB3-201ENST00000325307 KCNK15Q9H427 330 aa8.58□□□□□ -1.04
HMGB3-201ENST00000325307 AUNIPQ9H7T9 357 aa8.58□□□□□ -1.04
HMGB3-201ENST00000325307 NLKQ9UBE8 527 aa8.58□□□□□ -1.04
HMGB3-201ENST00000325307 MRPS28Q9Y2Q9 187 aaKnown RBP8.58□□□□□ -1.04
HMGB3-201ENST00000325307 U3KQ87 197 aa8.58□□□□□ -1.04
HMGB3-201ENST00000325307 CST4P01036 141 aa8.58□□□□□ -1.04
HMGB3-201ENST00000325307 CD3EP07766 207 aa8.58□□□□□ -1.04
HMGB3-201ENST00000325307 OR3A4PP47883 348 aa8.58□□□□□ -1.04
HMGB3-201ENST00000325307 GPM6AP51674 278 aa8.58□□□□□ -1.04
HMGB3-201ENST00000325307 TFF3Q07654 80 aa8.58□□□□□ -1.04
HMGB3-201ENST00000325307 IZUMO1Q8IYV9 350 aa8.58□□□□□ -1.04
HMGB3-201ENST00000325307 TNFAIP8L1Q8WVP5 186 aa8.58□□□□□ -1.04
HMGB3-201ENST00000325307 GCDHQ92947 438 aaPredicted RBP8.58□□□□□ -1.04
HMGB3-201ENST00000325307 TECTBQ96PL2 329 aa8.58□□□□□ -1.04
HMGB3-201ENST00000325307 COA4Q9NYJ1 87 aa8.58□□□□□ -1.04
HMGB3-201ENST00000325307 OR5V1Q9UGF6 321 aa8.58□□□□□ -1.04
HMGB3-201ENST00000325307 PRELID3BQ9Y3B1 194 aa8.58□□□□□ -1.04
HMGB3-201ENST00000325307 FAM208BQ5VWN6 2430 aa8.58□□□□□ -1.04
HMGB3-201ENST00000325307 MBD3L2BA0A1B0GVZ6 204 aaPredicted RBP8.58□□□□□ -1.04
HMGB3-201ENST00000325307 NUPL2O15504 423 aaKnown RBP8.58□□□□□ -1.04
HMGB3-201ENST00000325307 ALDOBP05062 364 aa8.58□□□□□ -1.04
HMGB3-201ENST00000325307 TMEM225BP0DP42 221 aa8.58□□□□□ -1.04
HMGB3-201ENST00000325307 PRF1P14222 555 aa8.58□□□□□ -1.04
HMGB3-201ENST00000325307 SLC6A1P30531 599 aa8.58□□□□□ -1.04
HMGB3-201ENST00000325307 FUT6P51993 359 aa8.58□□□□□ -1.04
HMGB3-201ENST00000325307 ATP1B3P54709 279 aa8.58□□□□□ -1.04
HMGB3-201ENST00000325307 KLF3P57682 345 aaPredicted RBP8.58□□□□□ -1.04
HMGB3-201ENST00000325307 PLA1AQ53H76 456 aa8.58□□□□□ -1.04
HMGB3-201ENST00000325307 UBE2NLQ5JXB2 153 aa8.58□□□□□ -1.04
HMGB3-201ENST00000325307 CLLU1Q5K131 121 aa8.58□□□□□ -1.04
HMGB3-201ENST00000325307 LHFPL2Q6ZUX7 228 aa8.58□□□□□ -1.04
HMGB3-201ENST00000325307 BIVMQ86UB2 503 aa8.58□□□□□ -1.04
HMGB3-201ENST00000325307 C19orf18Q8NEA5 215 aa8.58□□□□□ -1.04
HMGB3-201ENST00000325307 PHF21AQ96BD5 680 aa8.58□□□□□ -1.04
HMGB3-201ENST00000325307 NPDC1Q9NQX5 325 aaPredicted RBP8.58□□□□□ -1.04
HMGB3-201ENST00000325307 MRPL15Q9P015 296 aaKnown RBP8.58□□□□□ -1.04
HMGB3-201ENST00000325307 ING4Q9UNL4 249 aa8.58□□□□□ -1.04
HMGB3-201ENST00000325307 MPC1Q9Y5U8 109 aa8.58□□□□□ -1.04
HMGB3-201ENST00000325307 ROS1P08922 2347 aa8.58□□□□□ -1.04
Retrieved 100 of 20,778 RNA–protein pairs in 44.6 ms