RNA–Protein interactions for RNA: ENST00000318006.9

VPS39-201, Transcript of VPS39, HOPS complex subunit, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS39, Length 4,844 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-201ENST00000318006 SFTPA1Q8IWL2 248 aa10.27□□□□□ -0.77
VPS39-201ENST00000318006 BHLHE23Q8NDY6 225 aa10.27□□□□□ -0.77
VPS39-201ENST00000318006 APH1AQ96BI3 265 aa10.27□□□□□ -0.77
VPS39-201ENST00000318006 ARHGAP5-AS1Q96IT6 56 aa10.27□□□□□ -0.77
VPS39-201ENST00000318006 ZNF275Q9NSD4 429 aaPredicted RBP10.27□□□□□ -0.77
VPS39-201ENST00000318006 CACFD1Q9UGQ2 172 aa10.27□□□□□ -0.77
VPS39-201ENST00000318006 LIPGQ9Y5X9 500 aa10.27□□□□□ -0.77
VPS39-201ENST00000318006 FAM74A7A6NL05 159 aa10.27□□□□□ -0.77
VPS39-201ENST00000318006 SEMG1P04279 462 aa10.27□□□□□ -0.77
VPS39-201ENST00000318006 CXCL2P19875 107 aa10.27□□□□□ -0.77
VPS39-201ENST00000318006 AMTP48728 403 aa10.27□□□□□ -0.77
VPS39-201ENST00000318006 DLK1P80370 383 aa10.27□□□□□ -0.77
VPS39-201ENST00000318006 EDDM3AQ14507 147 aa10.27□□□□□ -0.77
VPS39-201ENST00000318006 FAM74A3Q4VXF1 159 aa10.27□□□□□ -0.77
VPS39-201ENST00000318006 FAM78BQ5VT40 261 aa10.27□□□□□ -0.77
VPS39-201ENST00000318006 OR11L1Q8NGX0 322 aa10.27□□□□□ -0.77
VPS39-201ENST00000318006 POLDIP2Q9Y2S7 368 aa10.27□□□□□ -0.77
VPS39-201ENST00000318006 CNN1P51911 297 aaKnown RBP10.26□□□□□ -0.77
VPS39-201ENST00000318006 VN1R4Q7Z5H5 301 aa10.26□□□□□ -0.77
VPS39-201ENST00000318006 PUSL1Q8N0Z8 303 aaKnown RBP10.26□□□□□ -0.77
VPS39-201ENST00000318006 NAA60Q9H7X0 242 aa10.26□□□□□ -0.77
VPS39-201ENST00000318006 MBD1Q9UIS9 605 aaPredicted RBP10.26□□□□□ -0.77
VPS39-201ENST00000318006 SH3BGRL2Q9UJC5 107 aa10.26□□□□□ -0.77
VPS39-201ENST00000318006 NINQ8N4C6 2090 aa10.26□□□□□ -0.77
VPS39-201ENST00000318006 ENSAO43768 121 aaKnown RBP10.26□□□□□ -0.77
VPS39-201ENST00000318006 MYF5P13349 255 aa10.26□□□□□ -0.77
VPS39-201ENST00000318006 OR5I1Q13606 314 aa10.26□□□□□ -0.77
VPS39-201ENST00000318006 GUCA2BQ16661 112 aa10.26□□□□□ -0.77
VPS39-201ENST00000318006 NRIP2Q9BQI9 281 aa10.26□□□□□ -0.77
VPS39-201ENST00000318006 CA10Q9NS85 328 aa10.26□□□□□ -0.77
VPS39-201ENST00000318006 TEX50A0A1B0GTY4 177 aa10.26□□□□□ -0.77
VPS39-201ENST00000318006 C5orf67F2Z3F1 127 aa10.26□□□□□ -0.77
VPS39-201ENST00000318006 RAC1P63000 192 aa10.26□□□□□ -0.77
VPS39-201ENST00000318006 ZNF468Q5VIY5 522 aaPredicted RBP10.26□□□□□ -0.77
VPS39-201ENST00000318006 PRR27Q6MZM9 219 aa10.26□□□□□ -0.77
VPS39-201ENST00000318006 OR1N1Q8NGS0 311 aa10.26□□□□□ -0.77
VPS39-201ENST00000318006 EXTL1Q92935 676 aa10.26□□□□□ -0.77
VPS39-201ENST00000318006 TNFSF18Q9UNG2 199 aa10.26□□□□□ -0.77
VPS39-201ENST00000318006 GOLT1BQ9Y3E0 138 aa10.26□□□□□ -0.77
VPS39-201ENST00000318006 TRIP12Q14669 1992 aaPredicted RBP10.26□□□□□ -0.77
VPS39-201ENST00000318006 HOXB3P14651 431 aaPredicted RBP10.26□□□□□ -0.77
VPS39-201ENST00000318006 CCL11P51671 97 aa10.26□□□□□ -0.77
VPS39-201ENST00000318006 ARL16Q0P5N6 197 aa10.26□□□□□ -0.77
VPS39-201ENST00000318006 WDR73Q6P4I2 378 aa10.26□□□□□ -0.77
VPS39-201ENST00000318006 RNASEKQ6P5S7 137 aaKnown RBP10.26□□□□□ -0.77
VPS39-201ENST00000318006 SLC25A26Q70HW3 274 aa10.26□□□□□ -0.77
VPS39-201ENST00000318006 SLC25A42Q86VD7 318 aa10.26□□□□□ -0.77
VPS39-201ENST00000318006 TRIB1Q96RU8 372 aa10.26□□□□□ -0.77
VPS39-201ENST00000318006 ADAT1Q9BUB4 502 aaKnown RBP10.26□□□□□ -0.77
VPS39-201ENST00000318006 ZNF107Q9UII5 783 aaPredicted RBP10.26□□□□□ -0.77
VPS39-201ENST00000318006 CCL27Q9Y4X3 112 aa10.26□□□□□ -0.77
VPS39-201ENST00000318006 KNTC1P50748 2209 aa10.25□□□□□ -0.77
VPS39-201ENST00000318006 ASCC3Q8N3C0 2202 aaKnown RBP10.25□□□□□ -0.77
VPS39-201ENST00000318006 SERTM2A0A1B0GWG4 89 aa10.25□□□□□ -0.77
VPS39-201ENST00000318006 YIF1AO95070 293 aa10.25□□□□□ -0.77
VPS39-201ENST00000318006 CRISP2P16562 243 aa10.25□□□□□ -0.77
VPS39-201ENST00000318006 SUMO3P55854 103 aaPredicted RBP10.25□□□□□ -0.77
VPS39-201ENST00000318006 PRSS41Q7RTY9 318 aa10.25□□□□□ -0.77
VPS39-201ENST00000318006 CISD2Q8N5K1 135 aaKnown RBP10.25□□□□□ -0.77
VPS39-201ENST00000318006 ANAPC16Q96DE5 110 aa10.25□□□□□ -0.77
VPS39-201ENST00000318006 OXGR1Q96P68 337 aa10.25□□□□□ -0.77
VPS39-201ENST00000318006 SH2D1BO14796 132 aa10.25□□□□□ -0.77
VPS39-201ENST00000318006 IGHV3-9P01782 118 aa10.25□□□□□ -0.77
VPS39-201ENST00000318006 GRPP07492 148 aa10.25□□□□□ -0.77
VPS39-201ENST00000318006 GPR12P47775 334 aa10.25□□□□□ -0.77
VPS39-201ENST00000318006 RBPJQ06330 500 aa10.25□□□□□ -0.77
VPS39-201ENST00000318006 ZG16BQ96DA0 208 aa10.25□□□□□ -0.77
VPS39-201ENST00000318006 H3BQ15 152 aa10.25□□□□□ -0.77
VPS39-201ENST00000318006 ADAM20O43506 726 aa10.25□□□□□ -0.77
VPS39-201ENST00000318006 CIDEAO60543 219 aa10.25□□□□□ -0.77
VPS39-201ENST00000318006 FAHP16930 419 aa10.25□□□□□ -0.77
VPS39-201ENST00000318006 CSN1S1P47710 185 aa10.25□□□□□ -0.77
VPS39-201ENST00000318006 P2RY1P47900 373 aa10.25□□□□□ -0.77
VPS39-201ENST00000318006 BPIFB3P59826 476 aa10.25□□□□□ -0.77
VPS39-201ENST00000318006 SURF2Q15527 256 aaPredicted RBP10.25□□□□□ -0.77
VPS39-201ENST00000318006 ZIC1Q15915 447 aa10.25□□□□□ -0.77
VPS39-201ENST00000318006 FFAR4Q5NUL3 377 aa10.25□□□□□ -0.77
VPS39-201ENST00000318006 STUMQ69YW2 141 aa10.25□□□□□ -0.77
VPS39-201ENST00000318006 THSD4Q6ZMP0 1018 aa10.25□□□□□ -0.77
VPS39-201ENST00000318006 FA2HQ7L5A8 372 aa10.25□□□□□ -0.77
VPS39-201ENST00000318006 ZNF573Q86YE8 665 aa10.25□□□□□ -0.77
VPS39-201ENST00000318006 OR4C3Q8NH37 302 aa10.25□□□□□ -0.77
VPS39-201ENST00000318006 NEIL1Q96FI4 390 aaPredicted RBP10.25□□□□□ -0.77
VPS39-201ENST00000318006 IP6K3Q96PC2 410 aa10.25□□□□□ -0.77
VPS39-201ENST00000318006 TAAR6Q96RI8 345 aa10.25□□□□□ -0.77
VPS39-201ENST00000318006 VN1R1Q9GZP7 353 aa10.25□□□□□ -0.77
VPS39-201ENST00000318006 ZNF552Q9H707 407 aaPredicted RBP10.25□□□□□ -0.77
VPS39-201ENST00000318006 MMP25Q9NPA2 562 aa10.25□□□□□ -0.77
VPS39-201ENST00000318006 LOXL2Q9Y4K0 774 aa10.25□□□□□ -0.77
VPS39-201ENST00000318006 ARID1AO14497 2285 aa10.25□□□□□ -0.77
VPS39-201ENST00000318006 GEMIN2O14893 280 aaKnown RBP10.24□□□□□ -0.77
VPS39-201ENST00000318006 RRP8O43159 456 aaKnown RBP10.24□□□□□ -0.77
VPS39-201ENST00000318006 HEXAP06865 529 aa10.24□□□□□ -0.77
VPS39-201ENST00000318006 OR5G3P0C626 314 aa10.24□□□□□ -0.77
VPS39-201ENST00000318006 FUT3P21217 361 aa10.24□□□□□ -0.77
VPS39-201ENST00000318006 CCL7P80098 99 aa10.24□□□□□ -0.77
VPS39-201ENST00000318006 HLA-BQ31612 363 aa10.24□□□□□ -0.77
VPS39-201ENST00000318006 CLEC18BQ6UXF7 455 aa10.24□□□□□ -0.77
VPS39-201ENST00000318006 M1APQ8TC57 530 aa10.24□□□□□ -0.77
VPS39-201ENST00000318006 ADIPOR1Q96A54 375 aa10.24□□□□□ -0.77
Retrieved 100 of 20,778 RNA–protein pairs in 38.9 ms