RNA–Protein interactions for RNA: ENST00000308271.13

USP48-201, Transcript of ubiquitin specific peptidase 48, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene USP48, Length 4,595 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP48-201ENST00000308271 RECKO95980 971 aa17.13■□□□□ 0.33
USP48-201ENST00000308271 CD8AP01732 235 aa17.13■□□□□ 0.33
USP48-201ENST00000308271 BGLAPP02818 100 aa17.13■□□□□ 0.33
USP48-201ENST00000308271 ZNF573Q86YE8 665 aa17.13■□□□□ 0.33
USP48-201ENST00000308271 EIF4E3Q8N5X7 224 aaKnown RBP17.13■□□□□ 0.33
USP48-201ENST00000308271 ZNF321PQ8N8H1 164 aa17.13■□□□□ 0.33
USP48-201ENST00000308271 MYOGP15173 224 aa17.13■□□□□ 0.33
USP48-201ENST00000308271 GPR3P46089 330 aa17.13■□□□□ 0.33
USP48-201ENST00000308271 KMT5CQ86Y97 462 aa17.13■□□□□ 0.33
USP48-201ENST00000308271 TMEM52Q8NDY8 209 aa17.13■□□□□ 0.33
USP48-201ENST00000308271 SPTBP11277 2137 aa17.12■□□□□ 0.33
USP48-201ENST00000308271 XKRY2A2RUG3 117 aa17.12■□□□□ 0.33
USP48-201ENST00000308271 GALNSP34059 522 aa17.12■□□□□ 0.33
USP48-201ENST00000308271 IL24Q13007 206 aa17.12■□□□□ 0.33
USP48-201ENST00000308271 SHHQ15465 462 aa17.12■□□□□ 0.33
USP48-201ENST00000308271 MCHR2Q969V1 340 aa17.12■□□□□ 0.33
USP48-201ENST00000308271 HRKO00198 91 aa17.12■□□□□ 0.33
USP48-201ENST00000308271 PDCD6O75340 191 aa17.12■□□□□ 0.33
USP48-201ENST00000308271 MBPP02686 304 aaPredicted RBP17.12■□□□□ 0.33
USP48-201ENST00000308271 RPS4Y1P22090 263 aaKnown RBP17.12■□□□□ 0.33
USP48-201ENST00000308271 HAAOP46952 286 aa17.12■□□□□ 0.33
USP48-201ENST00000308271 LTC4SQ16873 150 aa17.12■□□□□ 0.33
USP48-201ENST00000308271 TMEM240Q5SV17 173 aa17.12■□□□□ 0.33
USP48-201ENST00000308271 ZNF383Q8NA42 475 aa17.12■□□□□ 0.33
USP48-201ENST00000308271 SPINT2O43291 252 aa17.12■□□□□ 0.33
USP48-201ENST00000308271 ASAH2BP0C7U1 165 aa17.12■□□□□ 0.33
USP48-201ENST00000308271 PPP1CBP62140 327 aa17.12■□□□□ 0.33
USP48-201ENST00000308271 DHRS7BQ6IAN0 325 aaPredicted RBP17.12■□□□□ 0.33
USP48-201ENST00000308271 SLC36A1Q7Z2H8 476 aa17.12■□□□□ 0.33
USP48-201ENST00000308271 ZNF331Q9NQX6 463 aaPredicted RBP17.12■□□□□ 0.33
USP48-201ENST00000308271 POLDIP2Q9Y2S7 368 aa17.12■□□□□ 0.33
USP48-201ENST00000308271 MASP2O00187 686 aa17.11■□□□□ 0.33
USP48-201ENST00000308271 HOGA1Q86XE5 327 aa17.11■□□□□ 0.33
USP48-201ENST00000308271 RGP1Q92546 391 aaPredicted RBP17.11■□□□□ 0.33
USP48-201ENST00000308271 SLC26A1Q9H2B4 701 aa17.11■□□□□ 0.33
USP48-201ENST00000308271 MAP1LC3B2A6NCE7 125 aa17.11■□□□□ 0.33
USP48-201ENST00000308271 H3BQ15 152 aa17.11■□□□□ 0.33
USP48-201ENST00000308271 PTBP3O95758 552 aaKnown RBP17.11■□□□□ 0.33
USP48-201ENST00000308271 OR1F12Q8NHA8 337 aa17.11■□□□□ 0.33
USP48-201ENST00000308271 RTL8AQ9BWD3 113 aa17.11■□□□□ 0.33
USP48-201ENST00000308271 MAP1LC3BQ9GZQ8 125 aa17.11■□□□□ 0.33
USP48-201ENST00000308271 KCNK7Q9Y2U2 307 aa17.11■□□□□ 0.33
USP48-201ENST00000308271 KCNAB3O43448 404 aa17.11■□□□□ 0.33
USP48-201ENST00000308271 TPPP2P59282 170 aa17.11■□□□□ 0.33
USP48-201ENST00000308271 DLK1P80370 383 aa17.11■□□□□ 0.33
USP48-201ENST00000308271 PMP22Q01453 160 aa17.11■□□□□ 0.33
USP48-201ENST00000308271 ZNF260Q3ZCT1 412 aa17.11■□□□□ 0.33
USP48-201ENST00000308271 NR2C2APQ86WQ0 139 aa17.11■□□□□ 0.33
USP48-201ENST00000308271 ZDHHC23Q8IYP9 409 aa17.11■□□□□ 0.33
USP48-201ENST00000308271 ZNF707Q96C28 371 aaPredicted RBP17.11■□□□□ 0.33
USP48-201ENST00000308271 PACRGQ96M98 296 aaPredicted RBP17.11■□□□□ 0.33
USP48-201ENST00000308271 RCC2Q9P258 522 aaKnown RBP17.11■□□□□ 0.33
USP48-201ENST00000308271 OTOL1A6NHN0 477 aaPredicted RBP17.11■□□□□ 0.33
USP48-201ENST00000308271 TMEM229AB2RXF0 380 aa17.11■□□□□ 0.33
USP48-201ENST00000308271 RCC1P18754 421 aaPredicted RBP17.11■□□□□ 0.33
USP48-201ENST00000308271 G0S2P27469 103 aa17.11■□□□□ 0.33
USP48-201ENST00000308271 GALR1P47211 349 aa17.11■□□□□ 0.33
USP48-201ENST00000308271 POLR2GP62487 172 aaKnown RBP eCLIP17.11■□□□□ 0.33
USP48-201ENST00000308271 RAB35Q15286 201 aa17.11■□□□□ 0.33
USP48-201ENST00000308271 LYSMD4Q5XG99 296 aa17.11■□□□□ 0.33
USP48-201ENST00000308271 SLC26A10Q8NG04 563 aa17.11■□□□□ 0.33
USP48-201ENST00000308271 OR8U1Q8NH10 309 aa17.11■□□□□ 0.33
USP48-201ENST00000308271 PCOLCE2Q9UKZ9 415 aa17.11■□□□□ 0.33
USP48-201ENST00000308271 CDRT15L2A8MXV6 281 aa17.1■□□□□ 0.33
USP48-201ENST00000308271 SHISA8B8ZZ34 492 aa17.1■□□□□ 0.33
USP48-201ENST00000308271 NRG2O14511 850 aaPredicted RBP17.1■□□□□ 0.33
USP48-201ENST00000308271 ROM1Q03395 351 aa17.1■□□□□ 0.33
USP48-201ENST00000308271 ZDHHC19Q8WVZ1 309 aaPredicted RBP17.1■□□□□ 0.33
USP48-201ENST00000308271 C8orf44Q96CB5 159 aa17.1■□□□□ 0.33
USP48-201ENST00000308271 LRRC61Q9BV99 259 aa17.1■□□□□ 0.33
USP48-201ENST00000308271 OR5AC2Q9NZP5 309 aa17.1■□□□□ 0.33
USP48-201ENST00000308271 PLXNB2O15031 1838 aa17.1■□□□□ 0.33
USP48-201ENST00000308271 IGHV3-9P01782 118 aa17.1■□□□□ 0.33
USP48-201ENST00000308271 C1orf100Q5SVJ3 147 aa17.1■□□□□ 0.33
USP48-201ENST00000308271 C20orf196Q8IYI0 205 aa17.1■□□□□ 0.33
USP48-201ENST00000308271 MS4A3Q96HJ5 214 aa17.1■□□□□ 0.33
USP48-201ENST00000308271 GPR132Q9UNW8 380 aa17.1■□□□□ 0.33
USP48-201ENST00000308271 IGKV1D-16P01601 117 aa17.1■□□□□ 0.33
USP48-201ENST00000308271 IFI6P09912 130 aa17.1■□□□□ 0.33
USP48-201ENST00000308271 PKIAP61925 76 aa17.1■□□□□ 0.33
USP48-201ENST00000308271 FOXK1P85037 733 aa17.1■□□□□ 0.33
USP48-201ENST00000308271 SPACA9Q96E40 222 aaPredicted RBP17.1■□□□□ 0.33
USP48-201ENST00000308271 ADGRG7Q96K78 797 aa17.1■□□□□ 0.33
USP48-201ENST00000308271 AQP10Q96PS8 301 aa17.1■□□□□ 0.33
USP48-201ENST00000308271 GPR87Q9BY21 358 aa17.1■□□□□ 0.33
USP48-201ENST00000308271 MGST1P10620 155 aaKnown RBP17.09■□□□□ 0.33
USP48-201ENST00000308271 PPP1CAP62136 330 aa17.09■□□□□ 0.33
USP48-201ENST00000308271 PRAMEF5Q5TYX0 476 aa17.09■□□□□ 0.33
USP48-201ENST00000308271 PRAMEF6Q5VXH4 476 aa17.09■□□□□ 0.33
USP48-201ENST00000308271 KCNE5Q9UJ90 142 aa17.09■□□□□ 0.33
USP48-201ENST00000308271 B4GALT1P15291 398 aa17.09■□□□□ 0.33
USP48-201ENST00000308271 YRDCQ86U90 279 aaKnown RBP17.09■□□□□ 0.33
USP48-201ENST00000308271 ADAT3Q96EY9 351 aaPredicted RBP17.09■□□□□ 0.33
USP48-201ENST00000308271 CDS2O95674 445 aa17.09■□□□□ 0.33
USP48-201ENST00000308271 LY86O95711 162 aa17.09■□□□□ 0.33
USP48-201ENST00000308271 CXCL12P48061 93 aa17.09■□□□□ 0.33
USP48-201ENST00000308271 UBE2V2Q15819 145 aa17.09■□□□□ 0.33
USP48-201ENST00000308271 SLC35G3Q8N808 338 aa17.09■□□□□ 0.33
USP48-201ENST00000308271 ERGIC1Q969X5 290 aa17.09■□□□□ 0.33
USP48-201ENST00000308271 APH1AQ96BI3 265 aa17.09■□□□□ 0.33
Retrieved 100 of 20,778 RNA–protein pairs in 73.9 ms