RNA–Protein interactions for RNA: ENST00000306024.3

LSM3-201, Transcript of LSM3 homolog, U6 small nuclear RNA and mRNA degradation associated, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene LSM3, Length 3,815 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LSM3-201ENST00000306024 FAM157CP0CG43 387 aa9.64□□□□□ -0.87
LSM3-201ENST00000306024 MDKP21741 143 aaPredicted RBP9.64□□□□□ -0.87
LSM3-201ENST00000306024 RPS23P62266 143 aaKnown RBP9.64□□□□□ -0.87
LSM3-201ENST00000306024 PLGLB1Q02325 96 aa9.64□□□□□ -0.87
LSM3-201ENST00000306024 PNLIPRP3Q17RR3 467 aa9.64□□□□□ -0.87
LSM3-201ENST00000306024 MST1LQ2TV78 715 aa9.64□□□□□ -0.87
LSM3-201ENST00000306024 FHL5Q5TD97 284 aa9.64□□□□□ -0.87
LSM3-201ENST00000306024 C9orf40Q8IXQ3 194 aa9.64□□□□□ -0.87
LSM3-201ENST00000306024 ZNF248Q8NDW4 579 aa9.64□□□□□ -0.87
LSM3-201ENST00000306024 M1APQ8TC57 530 aa9.64□□□□□ -0.87
LSM3-201ENST00000306024 NDUFAF3Q9BU61 184 aa9.64□□□□□ -0.87
LSM3-201ENST00000306024 GPR87Q9BY21 358 aa9.64□□□□□ -0.87
LSM3-201ENST00000306024 WDR76Q9H967 626 aa9.64□□□□□ -0.87
LSM3-201ENST00000306024 EXOSC5Q9NQT4 235 aaKnown RBP eCLIP9.64□□□□□ -0.872e-7■■■■□ 21.1
LSM3-201ENST00000306024 ZNF701Q9NV72 531 aaPredicted RBP9.64□□□□□ -0.87
LSM3-201ENST00000306024 MRM2Q9UI43 246 aaKnown RBP9.64□□□□□ -0.87
LSM3-201ENST00000306024 HIF3AQ9Y2N7 669 aa9.64□□□□□ -0.87
LSM3-201ENST00000306024 CEACAM1P13688 526 aa9.63□□□□□ -0.87
LSM3-201ENST00000306024 ZNF823P16415 610 aa9.63□□□□□ -0.87
LSM3-201ENST00000306024 GNB3P16520 340 aa9.63□□□□□ -0.87
LSM3-201ENST00000306024 NBL1P41271 181 aa9.63□□□□□ -0.87
LSM3-201ENST00000306024 CHRFAM7AQ494W8 412 aa9.63□□□□□ -0.87
LSM3-201ENST00000306024 TIPARPQ7Z3E1 657 aaKnown RBP9.63□□□□□ -0.87
LSM3-201ENST00000306024 ZNF429Q86V71 674 aa9.63□□□□□ -0.87
LSM3-201ENST00000306024 MESP1Q9BRJ9 268 aa9.63□□□□□ -0.87
LSM3-201ENST00000306024 PRDM13Q9H4Q3 707 aa9.63□□□□□ -0.87
LSM3-201ENST00000306024 CBLN4Q9NTU7 201 aa9.63□□□□□ -0.87
LSM3-201ENST00000306024 DKKL1Q9UK85 242 aa9.63□□□□□ -0.87
LSM3-201ENST00000306024 HHLA2Q9UM44 414 aa9.63□□□□□ -0.87
LSM3-201ENST00000306024 LRP4O75096 1905 aa9.63□□□□□ -0.87
LSM3-201ENST00000306024 H3BQ15 152 aa9.63□□□□□ -0.87
LSM3-201ENST00000306024 ALOX5APP20292 161 aa9.63□□□□□ -0.87
LSM3-201ENST00000306024 IL2RGP31785 369 aa9.63□□□□□ -0.87
LSM3-201ENST00000306024 SLC6A8P48029 635 aa9.63□□□□□ -0.87
LSM3-201ENST00000306024 ZNF136P52737 540 aa9.63□□□□□ -0.87
LSM3-201ENST00000306024 H3F3AP84243 136 aa9.63□□□□□ -0.87
LSM3-201ENST00000306024 SLC18B1Q6NT16 456 aa9.63□□□□□ -0.87
LSM3-201ENST00000306024 ASCL5Q7RTU5 278 aa9.63□□□□□ -0.87
LSM3-201ENST00000306024 MAMDC2Q7Z304 686 aaPredicted RBP9.63□□□□□ -0.87
LSM3-201ENST00000306024 SGPP2Q8IWX5 399 aa9.63□□□□□ -0.87
LSM3-201ENST00000306024 OR5B2Q96R09 309 aa9.63□□□□□ -0.87
LSM3-201ENST00000306024 RAB18Q9NP72 206 aa9.63□□□□□ -0.87
LSM3-201ENST00000306024 EHFQ9NZC4 300 aa9.63□□□□□ -0.87
LSM3-201ENST00000306024 MYOTQ9UBF9 498 aa9.63□□□□□ -0.87
LSM3-201ENST00000306024 KLK13Q9UKR3 277 aa9.63□□□□□ -0.87
LSM3-201ENST00000306024 IGKV3D-11A0A0A0MRZ8 115 aa9.63□□□□□ -0.87
LSM3-201ENST00000306024 TGIF2-C20orf24A0A0A6YYL0 155 aa9.63□□□□□ -0.87
LSM3-201ENST00000306024 FAM230AA0A1W2PPH8 454 aa9.63□□□□□ -0.87
LSM3-201ENST00000306024 FCGR3AP08637 254 aa9.63□□□□□ -0.87
LSM3-201ENST00000306024 LSM6P62312 80 aaKnown RBP9.63□□□□□ -0.87
LSM3-201ENST00000306024 DBX2Q6ZNG2 339 aa9.63□□□□□ -0.87
LSM3-201ENST00000306024 LRP11Q86VZ4 500 aa9.63□□□□□ -0.87
LSM3-201ENST00000306024 SLC35G3Q8N808 338 aa9.63□□□□□ -0.87
LSM3-201ENST00000306024 EXD3Q8N9H8 876 aa9.63□□□□□ -0.87
LSM3-201ENST00000306024 OR5B12Q96R08 314 aa9.63□□□□□ -0.87
LSM3-201ENST00000306024 CABLES2Q9BTV7 478 aa9.63□□□□□ -0.87
LSM3-201ENST00000306024 SLC17A5Q9NRA2 495 aa9.63□□□□□ -0.87
LSM3-201ENST00000306024 HS3ST3B1Q9Y662 390 aa9.63□□□□□ -0.87
LSM3-201ENST00000306024 C9orf172C9J069 976 aa9.62□□□□□ -0.87
LSM3-201ENST00000306024 SDCBPO00560 298 aaPredicted RBP9.62□□□□□ -0.87
LSM3-201ENST00000306024 EFSO43281 561 aa9.62□□□□□ -0.87
LSM3-201ENST00000306024 TRGC1P0CF51 173 aa9.62□□□□□ -0.87
LSM3-201ENST00000306024 CSRP1P21291 193 aaKnown RBP9.62□□□□□ -0.87
LSM3-201ENST00000306024 GNMTQ14749 295 aa9.62□□□□□ -0.87
LSM3-201ENST00000306024 BIVMQ86UB2 503 aa9.62□□□□□ -0.87
LSM3-201ENST00000306024 TVP23CQ96ET8 276 aa9.62□□□□□ -0.87
LSM3-201ENST00000306024 RAB22AQ9UL26 194 aa9.62□□□□□ -0.87
LSM3-201ENST00000306024 PPIHO43447 177 aaKnown RBP9.62□□□□□ -0.87
LSM3-201ENST00000306024 CELA2AP08217 269 aa9.62□□□□□ -0.87
LSM3-201ENST00000306024 ZNF20P17024 532 aa9.62□□□□□ -0.87
LSM3-201ENST00000306024 FHITP49789 147 aa9.62□□□□□ -0.87
LSM3-201ENST00000306024 RRADP55042 308 aa9.62□□□□□ -0.87
LSM3-201ENST00000306024 DLK1P80370 383 aa9.62□□□□□ -0.87
LSM3-201ENST00000306024 C17orf67Q0P5P2 114 aa9.62□□□□□ -0.87
LSM3-201ENST00000306024 WDR38Q5JTN6 314 aa9.62□□□□□ -0.87
LSM3-201ENST00000306024 RAET1LQ5VY80 246 aa9.62□□□□□ -0.87
LSM3-201ENST00000306024 WBP2NLQ6ICG8 309 aa9.62□□□□□ -0.87
LSM3-201ENST00000306024 KLHL24Q6TFL4 600 aa9.62□□□□□ -0.87
LSM3-201ENST00000306024 BTNL8Q6UX41 500 aa9.62□□□□□ -0.87
LSM3-201ENST00000306024 RNF126Q9BV68 326 aa9.62□□□□□ -0.87
LSM3-201ENST00000306024 CYTL1Q9NRR1 136 aa9.62□□□□□ -0.87
LSM3-201ENST00000306024 C1orf123Q9NWV4 160 aa9.62□□□□□ -0.87
LSM3-201ENST00000306024 OR4C45A6NMZ5 311 aa9.62□□□□□ -0.87
LSM3-201ENST00000306024 C21orf140B9A014 251 aa9.62□□□□□ -0.87
LSM3-201ENST00000306024 H0YIZ8 118 aa9.62□□□□□ -0.87
LSM3-201ENST00000306024 MASP2O00187 686 aa9.62□□□□□ -0.87
LSM3-201ENST00000306024 XRCC2O43543 280 aa9.62□□□□□ -0.87
LSM3-201ENST00000306024 HIST1H2BKO60814 126 aa9.62□□□□□ -0.87
LSM3-201ENST00000306024 CD1AP06126 327 aa9.62□□□□□ -0.87
LSM3-201ENST00000306024 HIST1H2BJP06899 126 aa9.62□□□□□ -0.87
LSM3-201ENST00000306024 SOD3P08294 240 aa9.62□□□□□ -0.87
LSM3-201ENST00000306024 OMGP23515 440 aa9.62□□□□□ -0.87
LSM3-201ENST00000306024 HIST1H2BOP23527 126 aa9.62□□□□□ -0.87
LSM3-201ENST00000306024 HIST1H2BBP33778 126 aa9.62□□□□□ -0.87
LSM3-201ENST00000306024 SNCAP37840 140 aa9.62□□□□□ -0.87
LSM3-201ENST00000306024 CCL11P51671 97 aa9.62□□□□□ -0.87
LSM3-201ENST00000306024 HIST1H2BDP58876 126 aa9.62□□□□□ -0.87
LSM3-201ENST00000306024 RAB11AP62491 216 aa9.62□□□□□ -0.87
LSM3-201ENST00000306024 RPL23AP62750 156 aaKnown RBP9.62□□□□□ -0.87
LSM3-201ENST00000306024 HIST1H2BCP62807 126 aa9.62□□□□□ -0.87
Retrieved 100 of 20,778 RNA–protein pairs in 42.9 ms