RNA–Protein interactions for RNA: ENST00000303395.8

SCN1A-201, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

APPRIS ALT1 TSL 5 BASIC

Gene SCN1A, Length 8,533 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-201ENST00000303395 TMEM211Q6ICI0 200 aa4.72□□□□□ -1.65
SCN1A-201ENST00000303395 SYT9Q86SS6 491 aa4.72□□□□□ -1.65
SCN1A-201ENST00000303395 MSRB3Q8IXL7 192 aa4.72□□□□□ -1.65
SCN1A-201ENST00000303395 TAAR6Q96RI8 345 aa4.72□□□□□ -1.65
SCN1A-201ENST00000303395 ANXA10Q9UJ72 324 aa4.72□□□□□ -1.65
SCN1A-201ENST00000303395 OR2T8A6NH00 312 aa4.72□□□□□ -1.65
SCN1A-201ENST00000303395 HIST1H1BP16401 226 aaKnown RBP4.72□□□□□ -1.65
SCN1A-201ENST00000303395 NPPBP16860 134 aa4.72□□□□□ -1.65
SCN1A-201ENST00000303395 EGR1P18146 543 aa4.72□□□□□ -1.65
SCN1A-201ENST00000303395 RPL30P62888 115 aaKnown RBP4.72□□□□□ -1.65
SCN1A-201ENST00000303395 SRSF9Q13242 221 aaKnown RBP eCLIP4.72□□□□□ -1.65
SCN1A-201ENST00000303395 NRN1LQ496H8 165 aa4.72□□□□□ -1.65
SCN1A-201ENST00000303395 OR2T2Q6IF00 324 aa4.72□□□□□ -1.65
SCN1A-201ENST00000303395 GGACTQ9BVM4 153 aa4.72□□□□□ -1.65
SCN1A-201ENST00000303395 UBTD1Q9HAC8 227 aa4.72□□□□□ -1.65
SCN1A-201ENST00000303395 RABAC1Q9UI14 185 aa4.72□□□□□ -1.65
SCN1A-201ENST00000303395 VSIG4Q9Y279 399 aa4.72□□□□□ -1.65
SCN1A-201ENST00000303395 MYOCOSA0A1B0GUC4 107 aa4.72□□□□□ -1.65
SCN1A-201ENST00000303395 MAP1LC3B2A6NCE7 125 aa4.72□□□□□ -1.65
SCN1A-201ENST00000303395 KLF7O75840 302 aaPredicted RBP4.72□□□□□ -1.65
SCN1A-201ENST00000303395 CCR5P51681 352 aa4.72□□□□□ -1.65
SCN1A-201ENST00000303395 GPNMBQ14956 572 aa4.72□□□□□ -1.65
SCN1A-201ENST00000303395 SMN1Q16637 294 aaKnown RBP4.72□□□□□ -1.65
SCN1A-201ENST00000303395 TAS1R1Q7RTX1 841 aa4.72□□□□□ -1.65
SCN1A-201ENST00000303395 DOLPP1Q86YN1 238 aa4.72□□□□□ -1.65
SCN1A-201ENST00000303395 DCBLD1Q8N8Z6 715 aa4.72□□□□□ -1.65
SCN1A-201ENST00000303395 CYB5D2Q8WUJ1 264 aa4.72□□□□□ -1.65
SCN1A-201ENST00000303395 SECTM1Q8WVN6 248 aa4.72□□□□□ -1.65
SCN1A-201ENST00000303395 HHIPQ96QV1 700 aa4.72□□□□□ -1.65
SCN1A-201ENST00000303395 MAP1LC3BQ9GZQ8 125 aa4.72□□□□□ -1.65
SCN1A-201ENST00000303395 TMEM191AQ9H0A3 160 aa4.72□□□□□ -1.65
SCN1A-201ENST00000303395 CXorf36Q9H7Y0 433 aa4.72□□□□□ -1.65
SCN1A-201ENST00000303395 TRAV1-1A0A0B4J248 108 aa4.72□□□□□ -1.65
SCN1A-201ENST00000303395 RNF222A6NCQ9 220 aa4.72□□□□□ -1.65
SCN1A-201ENST00000303395 FRG2CA6NGY1 282 aa4.72□□□□□ -1.65
SCN1A-201ENST00000303395 ISG15P05161 165 aa4.72□□□□□ -1.65
SCN1A-201ENST00000303395 RPLP1P05386 114 aaKnown RBP4.72□□□□□ -1.65
SCN1A-201ENST00000303395 GZMMP51124 257 aa4.72□□□□□ -1.65
SCN1A-201ENST00000303395 MRPL58Q14197 206 aaKnown RBP4.72□□□□□ -1.65
SCN1A-201ENST00000303395 OR2B11Q5JQS5 317 aa4.72□□□□□ -1.65
SCN1A-201ENST00000303395 OR8G2PQ6IF36 304 aa4.72□□□□□ -1.65
SCN1A-201ENST00000303395 ZNF551Q7Z340 670 aaPredicted RBP4.72□□□□□ -1.65
SCN1A-201ENST00000303395 OR4C16Q8NGL9 310 aa4.72□□□□□ -1.65
SCN1A-201ENST00000303395 OR1N2Q8NGR9 330 aa4.72□□□□□ -1.65
SCN1A-201ENST00000303395 AK3Q9UIJ7 227 aa4.72□□□□□ -1.65
SCN1A-201ENST00000303395 CSAG2Q9Y5P2 127 aa4.72□□□□□ -1.65
SCN1A-201ENST00000303395 TAF1P21675 1872 aa4.72□□□□□ -1.65
SCN1A-201ENST00000303395 OR5B21A6NL26 309 aa4.72□□□□□ -1.65
SCN1A-201ENST00000303395 AQP7P3A6NL99 342 aa4.72□□□□□ -1.65
SCN1A-201ENST00000303395 MBTPS2O43462 519 aa4.72□□□□□ -1.65
SCN1A-201ENST00000303395 PITX3O75364 302 aa4.72□□□□□ -1.65
SCN1A-201ENST00000303395 NHLRC1Q6VVB1 395 aa4.72□□□□□ -1.65
SCN1A-201ENST00000303395 EID2BQ96D98 161 aa4.72□□□□□ -1.65
SCN1A-201ENST00000303395 SMIM7Q9BQ49 75 aa4.72□□□□□ -1.65
SCN1A-201ENST00000303395 TMEM70Q9BUB7 260 aa4.72□□□□□ -1.65
SCN1A-201ENST00000303395 SMIM3Q9BZL3 60 aa4.72□□□□□ -1.65
SCN1A-201ENST00000303395 NARFLQ9H6Q4 476 aa4.72□□□□□ -1.65
SCN1A-201ENST00000303395 HINT3Q9NQE9 182 aaKnown RBP4.72□□□□□ -1.65
SCN1A-201ENST00000303395 MCM3APO60318 1980 aa4.71□□□□□ -1.65
SCN1A-201ENST00000303395 TRBV6-7A0A0A0MS04 114 aa4.71□□□□□ -1.65
SCN1A-201ENST00000303395 ZFP92A6NM28 416 aa4.71□□□□□ -1.65
SCN1A-201ENST00000303395 COX7A2P2O60397 106 aa4.71□□□□□ -1.65
SCN1A-201ENST00000303395 PCBP4P57723 403 aaKnown RBP4.71□□□□□ -1.65
SCN1A-201ENST00000303395 PIGFQ07326 219 aa4.71□□□□□ -1.65
SCN1A-201ENST00000303395 C21orf62-AS1Q17RA5 79 aa4.71□□□□□ -1.65
SCN1A-201ENST00000303395 TMEM241Q24JQ0 296 aa4.71□□□□□ -1.65
SCN1A-201ENST00000303395 PRAMEF19Q5SWL8 479 aa4.71□□□□□ -1.65
SCN1A-201ENST00000303395 TEX29Q8N6K0 151 aa4.71□□□□□ -1.65
SCN1A-201ENST00000303395 RHBDD1Q8TEB9 315 aa4.71□□□□□ -1.65
SCN1A-201ENST00000303395 DNAJA3Q96EY1 480 aa4.71□□□□□ -1.65
SCN1A-201ENST00000303395 C4orf45Q96LM5 186 aa4.71□□□□□ -1.65
SCN1A-201ENST00000303395 APOBEC3BQ9UH17 382 aaKnown RBP4.71□□□□□ -1.65
SCN1A-201ENST00000303395 GDF2Q9UK05 429 aaPredicted RBP4.71□□□□□ -1.65
SCN1A-201ENST00000303395 A0A087WUJ7 227 aa4.71□□□□□ -1.66
SCN1A-201ENST00000303395 ZNF727A8MUV8 499 aa4.71□□□□□ -1.66
SCN1A-201ENST00000303395 OR7C1O76099 320 aaPredicted RBP4.71□□□□□ -1.66
SCN1A-201ENST00000303395 ONECUT2O95948 504 aa4.71□□□□□ -1.66
SCN1A-201ENST00000303395 IL2RAP01589 272 aa4.71□□□□□ -1.66
SCN1A-201ENST00000303395 RPS4Y1P22090 263 aaKnown RBP4.71□□□□□ -1.66
SCN1A-201ENST00000303395 GPR12P47775 334 aa4.71□□□□□ -1.66
SCN1A-201ENST00000303395 SDHAF4Q5VUM1 108 aa4.71□□□□□ -1.66
SCN1A-201ENST00000303395 NFAM1Q8NET5 270 aaPredicted RBP4.71□□□□□ -1.66
SCN1A-201ENST00000303395 PRSS3P2Q8NHM4 247 aa4.71□□□□□ -1.66
SCN1A-201ENST00000303395 ZG16BQ96DA0 208 aa4.71□□□□□ -1.66
SCN1A-201ENST00000303395 Q96M85 177 aa4.71□□□□□ -1.66
SCN1A-201ENST00000303395 NRIP2Q9BQI9 281 aa4.71□□□□□ -1.66
SCN1A-201ENST00000303395 COMMD5Q9GZQ3 224 aa4.71□□□□□ -1.66
SCN1A-201ENST00000303395 CNIH4Q9P003 139 aa4.71□□□□□ -1.66
SCN1A-201ENST00000303395 THYN1Q9P016 225 aa4.71□□□□□ -1.66
SCN1A-201ENST00000303395 NAT8BQ9UHF3 227 aa4.71□□□□□ -1.66
SCN1A-201ENST00000303395 CCDC187A0A096LP49 1063 aa4.71□□□□□ -1.66
SCN1A-201ENST00000303395 TSPAN13O95857 204 aa4.71□□□□□ -1.66
SCN1A-201ENST00000303395 HPP00738 406 aa4.71□□□□□ -1.66
SCN1A-201ENST00000303395 C8orf89P0DMQ9 161 aa4.71□□□□□ -1.66
SCN1A-201ENST00000303395 RGRP47804 291 aa4.71□□□□□ -1.66
SCN1A-201ENST00000303395 FUT6P51993 359 aa4.71□□□□□ -1.66
SCN1A-201ENST00000303395 ZNF90Q03938 601 aa4.71□□□□□ -1.66
SCN1A-201ENST00000303395 UBE2V2Q15819 145 aa4.71□□□□□ -1.66
SCN1A-201ENST00000303395 ZNF770Q6IQ21 691 aaPredicted RBP4.71□□□□□ -1.66
SCN1A-201ENST00000303395 DTX3Q8N9I9 347 aa4.71□□□□□ -1.66
Retrieved 100 of 20,778 RNA–protein pairs in 45.8 ms