RNA–Protein interactions for RNA: ENST00000300862.7

HIF3A-204, Transcript of hypoxia inducible factor 3 subunit alpha, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene HIF3A, Length 2,551 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HIF3A-204ENST00000300862 ZNF2Q9BSG1 426 aaPredicted RBP11.24□□□□□ -0.61
HIF3A-204ENST00000300862 SH2D2AQ9NP31 389 aa11.24□□□□□ -0.61
HIF3A-204ENST00000300862 FAM96BQ9Y3D0 163 aa11.24□□□□□ -0.61
HIF3A-204ENST00000300862 GPR179Q6PRD1 2367 aa11.24□□□□□ -0.61
HIF3A-204ENST00000300862 SHANK1Q9Y566 2161 aa11.24□□□□□ -0.61
HIF3A-204ENST00000300862 IGKV1-27A0A075B6S5 117 aa11.24□□□□□ -0.61
HIF3A-204ENST00000300862 TRBV6-7A0A0A0MS04 114 aa11.24□□□□□ -0.61
HIF3A-204ENST00000300862 LCATP04180 440 aa11.24□□□□□ -0.61
HIF3A-204ENST00000300862 TPT1P13693 172 aaKnown RBP11.24□□□□□ -0.61
HIF3A-204ENST00000300862 PTGER4P35408 488 aa11.24□□□□□ -0.61
HIF3A-204ENST00000300862 MLF1P58340 268 aa11.24□□□□□ -0.61
HIF3A-204ENST00000300862 HIST1H3AP68431 136 aa11.24□□□□□ -0.61
HIF3A-204ENST00000300862 PDZK1IP1Q13113 114 aa11.24□□□□□ -0.61
HIF3A-204ENST00000300862 HIST2H3PS2Q5TEC6 136 aa11.24□□□□□ -0.61
HIF3A-204ENST00000300862 PLXDC2Q6UX71 529 aa11.24□□□□□ -0.61
HIF3A-204ENST00000300862 FOXL2NBQ6ZUU3 175 aa11.24□□□□□ -0.61
HIF3A-204ENST00000300862 HIST2H3AQ71DI3 136 aa11.24□□□□□ -0.61
HIF3A-204ENST00000300862 SEMA6DQ8NFY4 1073 aa11.24□□□□□ -0.61
HIF3A-204ENST00000300862 M1APQ8TC57 530 aa11.24□□□□□ -0.61
HIF3A-204ENST00000300862 CNTNAP3BQ96NU0 1288 aa11.24□□□□□ -0.61
HIF3A-204ENST00000300862 TREM1Q9NP99 234 aa11.24□□□□□ -0.61
HIF3A-204ENST00000300862 UQCC1Q9NVA1 299 aa11.24□□□□□ -0.61
HIF3A-204ENST00000300862 NCKAP5O14513 1909 aa11.24□□□□□ -0.61
HIF3A-204ENST00000300862 PMS2P1A4D2B8 440 aa11.23□□□□□ -0.61
HIF3A-204ENST00000300862 FIGNL2A6NMB9 653 aa11.23□□□□□ -0.61
HIF3A-204ENST00000300862 LINC00587B1AMM8 73 aa11.23□□□□□ -0.61
HIF3A-204ENST00000300862 CXCL13O43927 109 aa11.23□□□□□ -0.61
HIF3A-204ENST00000300862 CBR3O75828 277 aa11.23□□□□□ -0.61
HIF3A-204ENST00000300862 TRAPPC6AO75865 159 aa11.23□□□□□ -0.61
HIF3A-204ENST00000300862 IGHV3-9P01782 118 aa11.23□□□□□ -0.61
HIF3A-204ENST00000300862 IFNA4P05014 189 aa11.23□□□□□ -0.61
HIF3A-204ENST00000300862 GLI4P10075 376 aa11.23□□□□□ -0.61
HIF3A-204ENST00000300862 ALDH3B1P43353 468 aa11.23□□□□□ -0.61
HIF3A-204ENST00000300862 POLR2GP62487 172 aaKnown RBP eCLIP11.23□□□□□ -0.61
HIF3A-204ENST00000300862 FAM189A2Q15884 450 aa11.23□□□□□ -0.61
HIF3A-204ENST00000300862 LPAL2Q16609 132 aa11.23□□□□□ -0.61
HIF3A-204ENST00000300862 FAM27BQ5VT28 67 aa11.23□□□□□ -0.61
HIF3A-204ENST00000300862 SLC16A14Q7RTX9 510 aa11.23□□□□□ -0.61
HIF3A-204ENST00000300862 FGFBP3Q8TAT2 258 aa11.23□□□□□ -0.61
HIF3A-204ENST00000300862 REEP6Q96HR9 211 aa11.23□□□□□ -0.61
HIF3A-204ENST00000300862 SEC11CQ9BY50 192 aa11.23□□□□□ -0.61
HIF3A-204ENST00000300862 LIME1Q9H400 295 aa11.23□□□□□ -0.61
HIF3A-204ENST00000300862 MMP26Q9NRE1 261 aa11.23□□□□□ -0.61
HIF3A-204ENST00000300862 GHRLQ9UBU3 117 aa11.23□□□□□ -0.61
HIF3A-204ENST00000300862 KNTC1P50748 2209 aa11.23□□□□□ -0.61
HIF3A-204ENST00000300862 SERPINE3A8MV23 424 aa11.23□□□□□ -0.61
HIF3A-204ENST00000300862 HEXAP06865 529 aa11.23□□□□□ -0.61
HIF3A-204ENST00000300862 FAM157CP0CG43 387 aa11.23□□□□□ -0.61
HIF3A-204ENST00000300862 FOLR3P41439 243 aa11.23□□□□□ -0.61
HIF3A-204ENST00000300862 SUCLG1P53597 346 aaKnown RBP11.23□□□□□ -0.61
HIF3A-204ENST00000300862 CARD18P57730 90 aa11.23□□□□□ -0.61
HIF3A-204ENST00000300862 Q0VFX4 171 aa11.23□□□□□ -0.61
HIF3A-204ENST00000300862 ANKRD39Q53RE8 183 aa11.23□□□□□ -0.61
HIF3A-204ENST00000300862 POC1AQ8NBT0 407 aa11.23□□□□□ -0.61
HIF3A-204ENST00000300862 SCGB3A2Q96PL1 93 aa11.23□□□□□ -0.61
HIF3A-204ENST00000300862 TM2D1Q9BX74 207 aa11.23□□□□□ -0.61
HIF3A-204ENST00000300862 NCOR1O75376 2440 aa11.23□□□□□ -0.61
HIF3A-204ENST00000300862 FREM1Q5H8C1 2179 aa11.23□□□□□ -0.61
HIF3A-204ENST00000300862 CSTBP04080 98 aaKnown RBP11.23□□□□□ -0.61
HIF3A-204ENST00000300862 ZNF32P17041 273 aa11.23□□□□□ -0.61
HIF3A-204ENST00000300862 CRYGSP22914 178 aa11.23□□□□□ -0.61
HIF3A-204ENST00000300862 ZNF133P52736 654 aaPredicted RBP11.23□□□□□ -0.61
HIF3A-204ENST00000300862 B3GALT5-AS1P59052 145 aa11.23□□□□□ -0.61
HIF3A-204ENST00000300862 MRPS34P82930 218 aaKnown RBP11.23□□□□□ -0.61
HIF3A-204ENST00000300862 ZFP36L1Q07352 338 aaKnown RBP11.23□□□□□ -0.61
HIF3A-204ENST00000300862 RSU1Q15404 277 aa11.23□□□□□ -0.61
HIF3A-204ENST00000300862 WIPI1Q5MNZ9 446 aaPredicted RBP11.23□□□□□ -0.61
HIF3A-204ENST00000300862 RPUSD3Q6P087 351 aaKnown RBP11.23□□□□□ -0.61
HIF3A-204ENST00000300862 PRSS54Q6PEW0 395 aa11.23□□□□□ -0.61
HIF3A-204ENST00000300862 RNF141Q8WVD5 230 aa11.23□□□□□ -0.61
HIF3A-204ENST00000300862 EMG1Q92979 244 aaKnown RBP11.23□□□□□ -0.61
HIF3A-204ENST00000300862 CPNE2Q96FN4 548 aaPredicted RBP11.23□□□□□ -0.61
HIF3A-204ENST00000300862 C2orf50Q96LR7 162 aa11.23□□□□□ -0.61
HIF3A-204ENST00000300862 Q96M66 194 aa11.23□□□□□ -0.61
HIF3A-204ENST00000300862 NRIP2Q9BQI9 281 aa11.23□□□□□ -0.61
HIF3A-204ENST00000300862 EXOSC5Q9NQT4 235 aaKnown RBP eCLIP11.23□□□□□ -0.61
HIF3A-204ENST00000300862 C14orf166Q9Y224 244 aaKnown RBP11.23□□□□□ -0.61
HIF3A-204ENST00000300862 NTN3O00634 580 aaPredicted RBP11.22□□□□□ -0.61
HIF3A-204ENST00000300862 SYNGR3O43761 229 aa11.22□□□□□ -0.61
HIF3A-204ENST00000300862 FARS2O95363 451 aaKnown RBP11.22□□□□□ -0.61
HIF3A-204ENST00000300862 MUC1P15941 1255 aaPredicted RBP11.22□□□□□ -0.61
HIF3A-204ENST00000300862 RCC1P18754 421 aaPredicted RBP11.22□□□□□ -0.61
HIF3A-204ENST00000300862 RGS19P49795 217 aa11.22□□□□□ -0.61
HIF3A-204ENST00000300862 HABP2Q14520 560 aaPredicted RBP11.22□□□□□ -0.61
HIF3A-204ENST00000300862 SWI5Q1ZZU3 235 aa11.22□□□□□ -0.61
HIF3A-204ENST00000300862 PIGYQ3MUY2 71 aa11.22□□□□□ -0.61
HIF3A-204ENST00000300862 SP6Q3SY56 376 aa11.22□□□□□ -0.61
HIF3A-204ENST00000300862 NANPQ8TBE9 248 aa11.22□□□□□ -0.61
HIF3A-204ENST00000300862 TOMM40LQ969M1 308 aa11.22□□□□□ -0.61
HIF3A-204ENST00000300862 AK3Q9UIJ7 227 aa11.22□□□□□ -0.61
HIF3A-204ENST00000300862 EDARQ9UNE0 448 aa11.22□□□□□ -0.61
HIF3A-204ENST00000300862 HTR5AP47898 357 aa11.22□□□□□ -0.61
HIF3A-204ENST00000300862 RAC3P60763 192 aa11.22□□□□□ -0.61
HIF3A-204ENST00000300862 NAAAQ02083 359 aa11.22□□□□□ -0.61
HIF3A-204ENST00000300862 PJVKQ0ZLH3 352 aa11.22□□□□□ -0.61
HIF3A-204ENST00000300862 RBM39Q14498 530 aaKnown RBP11.22□□□□□ -0.61
HIF3A-204ENST00000300862 IAH1Q2TAA2 248 aaPredicted RBP11.22□□□□□ -0.61
HIF3A-204ENST00000300862 TRIM61Q5EBN2 209 aa11.22□□□□□ -0.61
HIF3A-204ENST00000300862 OR2A2Q6IF42 318 aa11.22□□□□□ -0.61
HIF3A-204ENST00000300862 AAED1Q7RTV5 226 aa11.22□□□□□ -0.61
Retrieved 100 of 20,778 RNA–protein pairs in 35.4 ms