RNA–Protein interactions for RNA: ENST00000263630.12

CCDC88A-201, Transcript of coiled-coil domain containing 88A, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene CCDC88A, Length 9,667 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-201ENST00000263630 OR2W5A6NFC9 320 aa12.54□□□□□ -0.4
CCDC88A-201ENST00000263630 SMAD6O43541 496 aaKnown RBP12.54□□□□□ -0.4
CCDC88A-201ENST00000263630 DNLZQ5SXM8 178 aa12.54□□□□□ -0.4
CCDC88A-201ENST00000263630 OR6C3Q9NZP0 311 aa12.54□□□□□ -0.4
CCDC88A-201ENST00000263630 DOK5Q9P104 306 aa12.54□□□□□ -0.4
CCDC88A-201ENST00000263630 LPAR3Q9UBY5 353 aa12.54□□□□□ -0.4
CCDC88A-201ENST00000263630 TARM1B6A8C7 271 aa12.53□□□□□ -0.4
CCDC88A-201ENST00000263630 ACAA1P09110 424 aaPredicted RBP12.53□□□□□ -0.4
CCDC88A-201ENST00000263630 CALHM1Q8IU99 346 aa12.53□□□□□ -0.4
CCDC88A-201ENST00000263630 LYG1Q8N1E2 194 aa12.53□□□□□ -0.4
CCDC88A-201ENST00000263630 PGPEP1Q9NXJ5 209 aa12.53□□□□□ -0.4
CCDC88A-201ENST00000263630 TRGV8A0A0C4DH27 118 aa12.53□□□□□ -0.4
CCDC88A-201ENST00000263630 BTG2P78543 158 aa12.53□□□□□ -0.4
CCDC88A-201ENST00000263630 SIRT7Q9NRC8 400 aa12.53□□□□□ -0.4
CCDC88A-201ENST00000263630 GNG7O60262 68 aa12.53□□□□□ -0.4
CCDC88A-201ENST00000263630 ATF1P18846 271 aa12.53□□□□□ -0.4
CCDC88A-201ENST00000263630 CACNG7P62955 275 aa12.53□□□□□ -0.4
CCDC88A-201ENST00000263630 TWIST1Q15672 202 aa12.53□□□□□ -0.4
CCDC88A-201ENST00000263630 PRSS42Q7Z5A4 293 aa12.53□□□□□ -0.4
CCDC88A-201ENST00000263630 TMEM204Q9BSN7 226 aa12.53□□□□□ -0.4
CCDC88A-201ENST00000263630 C20orf141Q9NUB4 165 aa12.53□□□□□ -0.4
CCDC88A-201ENST00000263630 COA4Q9NYJ1 87 aa12.53□□□□□ -0.4
CCDC88A-201ENST00000263630 RALGAPA1Q6GYQ0 2036 aa12.53□□□□□ -0.4
CCDC88A-201ENST00000263630 hADV38S2A0JD32 116 aa12.53□□□□□ -0.4
CCDC88A-201ENST00000263630 GSTZ1O43708 216 aaPredicted RBP12.53□□□□□ -0.4
CCDC88A-201ENST00000263630 PI3P19957 117 aa12.53□□□□□ -0.4
CCDC88A-201ENST00000263630 DHRS4L2Q6PKH6 230 aa12.53□□□□□ -0.4
CCDC88A-201ENST00000263630 SIRT6Q8N6T7 355 aa12.53□□□□□ -0.4
CCDC88A-201ENST00000263630 FGF13Q92913 245 aa12.53□□□□□ -0.4
CCDC88A-201ENST00000263630 RBFOX2O43251 390 aaKnown RBP eCLIP12.53□□□□□ -0.42e-7■■■■■ 40.6
CCDC88A-201ENST00000263630 ZXDAP98168 799 aa12.53□□□□□ -0.4
CCDC88A-201ENST00000263630 FAM24BQ8N5W8 94 aa12.53□□□□□ -0.4
CCDC88A-201ENST00000263630 KCNMB2Q9Y691 235 aa12.53□□□□□ -0.4
CCDC88A-201ENST00000263630 FAM221AA4D161 298 aa12.53□□□□□ -0.4
CCDC88A-201ENST00000263630 TCF21O43680 179 aa12.53□□□□□ -0.4
CCDC88A-201ENST00000263630 GP1BAP07359 652 aa12.53□□□□□ -0.4
CCDC88A-201ENST00000263630 ERVS71-1P61550 626 aa12.53□□□□□ -0.4
CCDC88A-201ENST00000263630 NUDCD2Q8WVJ2 157 aa12.53□□□□□ -0.4
CCDC88A-201ENST00000263630 DHCR7Q9UBM7 475 aaKnown RBP12.53□□□□□ -0.4
CCDC88A-201ENST00000263630 ZNF195O14628 629 aa12.53□□□□□ -0.4
CCDC88A-201ENST00000263630 PPP1R17O96001 155 aa12.53□□□□□ -0.4
CCDC88A-201ENST00000263630 C1SP09871 688 aa12.53□□□□□ -0.4
CCDC88A-201ENST00000263630 OR4A8P0C604 315 aa12.53□□□□□ -0.4
CCDC88A-201ENST00000263630 LIPAP38571 399 aa12.53□□□□□ -0.4
CCDC88A-201ENST00000263630 OR4S2Q8NH73 311 aa12.53□□□□□ -0.4
CCDC88A-201ENST00000263630 SPPL3Q8TCT6 385 aa12.53□□□□□ -0.4
CCDC88A-201ENST00000263630 HIST1H4GQ99525 98 aa12.53□□□□□ -0.4
CCDC88A-201ENST00000263630 PRRX2Q99811 253 aa12.53□□□□□ -0.4
CCDC88A-201ENST00000263630 TMPRSS13Q9BYE2 586 aa12.53□□□□□ -0.4
CCDC88A-201ENST00000263630 DIO1P49895 249 aa12.52□□□□□ -0.4
CCDC88A-201ENST00000263630 TMEFF1Q8IYR6 380 aa12.52□□□□□ -0.4
CCDC88A-201ENST00000263630 FBXL6Q8N531 539 aa12.52□□□□□ -0.4
CCDC88A-201ENST00000263630 OR52N5Q8NH56 324 aa12.52□□□□□ -0.4
CCDC88A-201ENST00000263630 TEX101Q9BY14 249 aa12.52□□□□□ -0.4
CCDC88A-201ENST00000263630 HAPLN2Q9GZV7 340 aa12.52□□□□□ -0.4
CCDC88A-201ENST00000263630 PRDM7Q9NQW5 492 aa12.52□□□□□ -0.4
CCDC88A-201ENST00000263630 TMEM38BQ9NVV0 291 aa12.52□□□□□ -0.4
CCDC88A-201ENST00000263630 PAM16Q9Y3D7 125 aa12.52□□□□□ -0.4
CCDC88A-201ENST00000263630 SS18L1O75177 396 aaPredicted RBP12.52□□□□□ -0.4
CCDC88A-201ENST00000263630 AESQ08117 197 aa12.52□□□□□ -0.4
CCDC88A-201ENST00000263630 RNPS1Q15287 305 aaKnown RBP12.52□□□□□ -0.4
CCDC88A-201ENST00000263630 TMEM215Q68D42 235 aa12.52□□□□□ -0.4
CCDC88A-201ENST00000263630 JMJD6Q6NYC1 403 aaPredicted RBP12.52□□□□□ -0.4
CCDC88A-201ENST00000263630 DUSP18Q8NEJ0 188 aa12.52□□□□□ -0.4
CCDC88A-201ENST00000263630 CA10Q9NS85 328 aa12.52□□□□□ -0.4
CCDC88A-201ENST00000263630 SLCO1C1Q9NYB5 712 aa12.52□□□□□ -0.4
CCDC88A-201ENST00000263630 VSIG4Q9Y279 399 aa12.52□□□□□ -0.4
CCDC88A-201ENST00000263630 PIKFYVEQ9Y2I7 2098 aa12.52□□□□□ -0.4
CCDC88A-201ENST00000263630 CD22P20273 847 aa12.52□□□□□ -0.4
CCDC88A-201ENST00000263630 PCBP3P57721 371 aaKnown RBP12.52□□□□□ -0.4
CCDC88A-201ENST00000263630 GFRALQ6UXV0 394 aa12.52□□□□□ -0.4
CCDC88A-201ENST00000263630 LINC00469Q8N7U9 141 aa12.52□□□□□ -0.4
CCDC88A-201ENST00000263630 Q8WTZ3 238 aa12.52□□□□□ -0.4
CCDC88A-201ENST00000263630 ARRDC5A6NEK1 342 aa12.52□□□□□ -0.41
CCDC88A-201ENST00000263630 RBFOX3A6NFN3 312 aa12.52□□□□□ -0.41
CCDC88A-201ENST00000263630 SPRY3O43610 288 aa12.52□□□□□ -0.41
CCDC88A-201ENST00000263630 GNG10P50151 68 aa12.52□□□□□ -0.41
CCDC88A-201ENST00000263630 SAXO2Q658L1 398 aa12.52□□□□□ -0.41
CCDC88A-201ENST00000263630 CDX2Q99626 313 aaPredicted RBP12.52□□□□□ -0.41
CCDC88A-201ENST00000263630 RGPD1P0DJD0 1748 aa12.52□□□□□ -0.41
CCDC88A-201ENST00000263630 MYO16Q9Y6X6 1858 aa12.52□□□□□ -0.41
CCDC88A-201ENST00000263630 C11orf94C9JXX5 98 aa12.52□□□□□ -0.41
CCDC88A-201ENST00000263630 FAM53AQ6NSI3 398 aaPredicted RBP12.52□□□□□ -0.41
CCDC88A-201ENST00000263630 ASCL5Q7RTU5 278 aa12.52□□□□□ -0.41
CCDC88A-201ENST00000263630 PRELID3AQ96N28 172 aa12.52□□□□□ -0.41
CCDC88A-201ENST00000263630 C16orf70Q9BSU1 422 aa12.52□□□□□ -0.41
CCDC88A-201ENST00000263630 PRSS21Q9Y6M0 314 aa12.52□□□□□ -0.41
CCDC88A-201ENST00000263630 SLCO4C1Q6ZQN7 724 aa12.52□□□□□ -0.41
CCDC88A-201ENST00000263630 BCORP1Q8N888 145 aa12.52□□□□□ -0.41
CCDC88A-201ENST00000263630 MSANTD3-TMEFF1A0A0A6YYJ0 341 aa12.52□□□□□ -0.41
CCDC88A-201ENST00000263630 PXNP49023 591 aaPredicted RBP12.52□□□□□ -0.41
CCDC88A-201ENST00000263630 COL19A1Q14993 1142 aa12.52□□□□□ -0.41
CCDC88A-201ENST00000263630 TMEM136Q6ZRR5 245 aa12.52□□□□□ -0.41
CCDC88A-201ENST00000263630 OR2W3Q7Z3T1 314 aa12.52□□□□□ -0.41
CCDC88A-201ENST00000263630 FCGR3BO75015 233 aa12.51□□□□□ -0.41
CCDC88A-201ENST00000263630 ZNF789Q5FWF6 425 aa12.51□□□□□ -0.41
CCDC88A-201ENST00000263630 NEURL2Q9BR09 285 aa12.51□□□□□ -0.41
CCDC88A-201ENST00000263630 C7orf72A4D263 438 aa12.51□□□□□ -0.41
CCDC88A-201ENST00000263630 CLEC2LP0C7M8 214 aa12.51□□□□□ -0.41
CCDC88A-201ENST00000263630 PITX1P78337 314 aaPredicted RBP12.51□□□□□ -0.41
Retrieved 100 of 20,778 RNA–protein pairs in 39.9 ms