RNA–Protein interactions for RNA: ENST00000254351.8

SDC1-201, Transcript of syndecan 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SDC1, Length 3,147 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC1-201ENST00000254351 FAM221BA6H8Z2 402 aa12.62□□□□□ -0.39
SDC1-201ENST00000254351 RBFOX3A6NFN3 312 aa12.62□□□□□ -0.39
SDC1-201ENST00000254351 F5H5K5 113 aa12.62□□□□□ -0.39
SDC1-201ENST00000254351 IFNL4K9M1U5 179 aa12.62□□□□□ -0.39
SDC1-201ENST00000254351 HHEXQ03014 270 aa12.62□□□□□ -0.39
SDC1-201ENST00000254351 VAX1Q5SQQ9 334 aa12.62□□□□□ -0.39
SDC1-201ENST00000254351 HIST3H2BBQ8N257 126 aa12.62□□□□□ -0.39
SDC1-201ENST00000254351 ZNF283Q8N7M2 679 aa12.62□□□□□ -0.39
SDC1-201ENST00000254351 ABHD5Q8WTS1 349 aa12.62□□□□□ -0.39
SDC1-201ENST00000254351 PTPMT1Q8WUK0 201 aaPredicted RBP12.62□□□□□ -0.39
SDC1-201ENST00000254351 SCGB3A2Q96PL1 93 aa12.62□□□□□ -0.39
SDC1-201ENST00000254351 NKX2-4Q9H2Z4 354 aa12.62□□□□□ -0.39
SDC1-201ENST00000254351 AK3Q9UIJ7 227 aa12.62□□□□□ -0.39
SDC1-201ENST00000254351 TRANK1O15050 2925 aa12.62□□□□□ -0.39
SDC1-201ENST00000254351 SDK2Q58EX2 2172 aa12.62□□□□□ -0.39
SDC1-201ENST00000254351 SEC14L6B5MCN3 397 aa12.62□□□□□ -0.39
SDC1-201ENST00000254351 KLF8O95600 359 aaPredicted RBP12.62□□□□□ -0.39
SDC1-201ENST00000254351 FUT7Q11130 342 aa12.62□□□□□ -0.39
SDC1-201ENST00000254351 CPEB4Q17RY0 729 aaKnown RBP eCLIP12.62□□□□□ -0.39
SDC1-201ENST00000254351 TMEM176BQ3YBM2 270 aaPredicted RBP12.62□□□□□ -0.39
SDC1-201ENST00000254351 Q6ZSR6 202 aa12.62□□□□□ -0.39
SDC1-201ENST00000254351 OR5AS1Q8N127 324 aa12.62□□□□□ -0.39
SDC1-201ENST00000254351 LIPHQ8WWY8 451 aa12.62□□□□□ -0.39
SDC1-201ENST00000254351 PTX4Q96A99 478 aa12.62□□□□□ -0.39
SDC1-201ENST00000254351 FAAP24Q9BTP7 215 aa12.62□□□□□ -0.39
SDC1-201ENST00000254351 ADAM19Q9H013 955 aa12.62□□□□□ -0.39
SDC1-201ENST00000254351 PRODH2Q9UF12 536 aa12.62□□□□□ -0.39
SDC1-201ENST00000254351 E9PLN8 166 aa12.61□□□□□ -0.39
SDC1-201ENST00000254351 APODP05090 189 aa12.61□□□□□ -0.39
SDC1-201ENST00000254351 CHRM2P08172 466 aa12.61□□□□□ -0.39
SDC1-201ENST00000254351 COL9A1P20849 921 aa12.61□□□□□ -0.39
SDC1-201ENST00000254351 TAS2R60P59551 318 aa12.61□□□□□ -0.39
SDC1-201ENST00000254351 TAF9Q16594 264 aa12.61□□□□□ -0.39
SDC1-201ENST00000254351 WDR25Q64LD2 544 aaPredicted RBP12.61□□□□□ -0.39
SDC1-201ENST00000254351 REC114Q7Z4M0 266 aa12.61□□□□□ -0.39
SDC1-201ENST00000254351 OR8B12Q8NGG6 310 aa12.61□□□□□ -0.39
SDC1-201ENST00000254351 HAS2Q92819 552 aa12.61□□□□□ -0.39
SDC1-201ENST00000254351 EMG1Q92979 244 aaKnown RBP12.61□□□□□ -0.39
SDC1-201ENST00000254351 URM1Q9BTM9 101 aaKnown RBP12.61□□□□□ -0.39
SDC1-201ENST00000254351 CA14Q9ULX7 337 aa12.61□□□□□ -0.39
SDC1-201ENST00000254351 POMT1Q9Y6A1 747 aa12.61□□□□□ -0.39
SDC1-201ENST00000254351 SMCO3A2RU48 225 aa12.61□□□□□ -0.39
SDC1-201ENST00000254351 ZFP92A6NM28 416 aa12.61□□□□□ -0.39
SDC1-201ENST00000254351 FCGR2AP12318 317 aa12.61□□□□□ -0.39
SDC1-201ENST00000254351 TBPP20226 339 aa12.61□□□□□ -0.39
SDC1-201ENST00000254351 IL2RGP31785 369 aa12.61□□□□□ -0.39
SDC1-201ENST00000254351 RAB11AP62491 216 aa12.61□□□□□ -0.39
SDC1-201ENST00000254351 HOXB13Q92826 284 aaPredicted RBP12.61□□□□□ -0.39
SDC1-201ENST00000254351 A0A1W2PR80 420 aa12.6□□□□□ -0.39
SDC1-201ENST00000254351 H3BP45 60 aa12.6□□□□□ -0.39
SDC1-201ENST00000254351 IL33O95760 270 aa12.6□□□□□ -0.39
SDC1-201ENST00000254351 CLPSP04118 112 aa12.6□□□□□ -0.39
SDC1-201ENST00000254351 ISG15P05161 165 aa12.6□□□□□ -0.39
SDC1-201ENST00000254351 FAHP16930 419 aa12.6□□□□□ -0.39
SDC1-201ENST00000254351 MPZP25189 248 aa12.6□□□□□ -0.39
SDC1-201ENST00000254351 NUP54Q7Z3B4 507 aa12.6□□□□□ -0.39
SDC1-201ENST00000254351 RTN4IP1Q8WWV3 396 aaPredicted RBP12.6□□□□□ -0.39
SDC1-201ENST00000254351 SRPK3Q9UPE1 567 aa12.6□□□□□ -0.39
SDC1-201ENST00000254351 NSG1A0A0A6YYJ2 146 aa12.6□□□□□ -0.39
SDC1-201ENST00000254351 IGKV1-9A0A0C4DH69 117 aa12.6□□□□□ -0.39
SDC1-201ENST00000254351 HSPB2A8KAH6 182 aa12.6□□□□□ -0.39
SDC1-201ENST00000254351 PHF1O43189 567 aaPredicted RBP12.6□□□□□ -0.39
SDC1-201ENST00000254351 OR5H8P0DN80 308 aa12.6□□□□□ -0.39
SDC1-201ENST00000254351 HSPB2Q16082 182 aa12.6□□□□□ -0.39
SDC1-201ENST00000254351 TMEM196Q5HYL7 178 aa12.6□□□□□ -0.39
SDC1-201ENST00000254351 C1orf189Q5VU69 101 aa12.6□□□□□ -0.39
SDC1-201ENST00000254351 C1orf147Q96MC9 270 aaPredicted RBP12.6□□□□□ -0.39
SDC1-201ENST00000254351 TPSD1Q9BZJ3 242 aa12.6□□□□□ -0.39
SDC1-201ENST00000254351 DIDO1Q9BTC0 2240 aaKnown RBP12.6□□□□□ -0.39
SDC1-201ENST00000254351 E5RGE8 158 aa12.6□□□□□ -0.39
SDC1-201ENST00000254351 MS4A18H0YCH9 400 aa12.6□□□□□ -0.39
SDC1-201ENST00000254351 PLRG1O43660 514 aaKnown RBP12.6□□□□□ -0.39
SDC1-201ENST00000254351 GSTP1P09211 210 aaKnown RBP12.6□□□□□ -0.39
SDC1-201ENST00000254351 PGCP20142 388 aa12.6□□□□□ -0.39
SDC1-201ENST00000254351 FUT3P21217 361 aa12.6□□□□□ -0.39
SDC1-201ENST00000254351 ATP6V0CP27449 155 aa12.6□□□□□ -0.39
SDC1-201ENST00000254351 KISS1Q15726 138 aa12.6□□□□□ -0.39
SDC1-201ENST00000254351 MS4A18Q3C1V0 323 aa12.6□□□□□ -0.39
SDC1-201ENST00000254351 LHFPL1Q86WI0 220 aa12.6□□□□□ -0.39
SDC1-201ENST00000254351 OR13H1Q8NG92 308 aa12.6□□□□□ -0.39
SDC1-201ENST00000254351 OR2AJ1Q8NGZ0 328 aa12.6□□□□□ -0.39
SDC1-201ENST00000254351 MVB12AQ96EY5 273 aa12.6□□□□□ -0.39
SDC1-201ENST00000254351 GALNT14Q96FL9 552 aa12.6□□□□□ -0.39
SDC1-201ENST00000254351 GNG13Q9P2W3 67 aa12.6□□□□□ -0.39
SDC1-201ENST00000254351 KCNIP3Q9Y2W7 256 aa12.6□□□□□ -0.39
SDC1-201ENST00000254351 NSG2Q9Y328 171 aa12.6□□□□□ -0.39
SDC1-201ENST00000254351 SPRY1O43609 319 aaPredicted RBP12.59□□□□□ -0.39
SDC1-201ENST00000254351 GAPDHP04406 335 aaKnown RBP12.59□□□□□ -0.39
SDC1-201ENST00000254351 DBHP09172 617 aa12.59□□□□□ -0.39
SDC1-201ENST00000254351 HNRNPA1P09651 372 aaKnown RBP eCLIP12.59□□□□□ -0.39
SDC1-201ENST00000254351 PMELP40967 661 aa12.59□□□□□ -0.39
SDC1-201ENST00000254351 P2RY1P47900 373 aa12.59□□□□□ -0.39
SDC1-201ENST00000254351 MMP16P51512 607 aa12.59□□□□□ -0.39
SDC1-201ENST00000254351 PKIAP61925 76 aa12.59□□□□□ -0.39
SDC1-201ENST00000254351 RPL23AP62750 156 aaKnown RBP12.59□□□□□ -0.39
SDC1-201ENST00000254351 HIST2H3PS2Q5TEC6 136 aa12.59□□□□□ -0.39
SDC1-201ENST00000254351 LYPD6BQ8NI32 183 aa12.59□□□□□ -0.39
SDC1-201ENST00000254351 RNF133Q8WVZ7 376 aa12.59□□□□□ -0.39
SDC1-201ENST00000254351 NIPSNAP3BQ9BS92 247 aa12.59□□□□□ -0.39
SDC1-201ENST00000254351 PECRQ9BY49 303 aa12.59□□□□□ -0.39
Retrieved 100 of 20,778 RNA–protein pairs in 65 ms