RNA–Protein interactions for RNA: ENST00000251722.10

USP40-201, Transcript of ubiquitin specific peptidase 40, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene USP40, Length 5,692 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-201ENST00000251722 FGF11Q92914 225 aa11.4□□□□□ -0.59
USP40-201ENST00000251722 CXorf58Q96LI9 332 aa11.4□□□□□ -0.59
USP40-201ENST00000251722 PRR14Q9BWN1 585 aa11.4□□□□□ -0.59
USP40-201ENST00000251722 PLA2G3Q9NZ20 509 aa11.4□□□□□ -0.59
USP40-201ENST00000251722 ASB1Q9Y576 335 aa11.4□□□□□ -0.59
USP40-201ENST00000251722 DLEC1Q9Y238 1755 aa11.4□□□□□ -0.59
USP40-201ENST00000251722 TNS1Q9HBL0 1735 aaKnown RBP11.39□□□□□ -0.59
USP40-201ENST00000251722 CT45A10P0DMU9 189 aa11.39□□□□□ -0.59
USP40-201ENST00000251722 CD99P14209 185 aa11.39□□□□□ -0.59
USP40-201ENST00000251722 LINC01555Q8NAE3 123 aa11.39□□□□□ -0.59
USP40-201ENST00000251722 FBXO17Q96EF6 278 aa11.39□□□□□ -0.59
USP40-201ENST00000251722 C1QTNF6Q9BXI9 259 aa11.39□□□□□ -0.59
USP40-201ENST00000251722 AK3Q9UIJ7 227 aa11.39□□□□□ -0.59
USP40-201ENST00000251722 SIGLEC5O15389 551 aa11.39□□□□□ -0.59
USP40-201ENST00000251722 OR7C2O60412 319 aa11.39□□□□□ -0.59
USP40-201ENST00000251722 ANKRD34CP0C6C1 535 aa11.39□□□□□ -0.59
USP40-201ENST00000251722 FUT3P21217 361 aa11.39□□□□□ -0.59
USP40-201ENST00000251722 AGFG1P52594 562 aaKnown RBP11.39□□□□□ -0.59
USP40-201ENST00000251722 UBTD1Q9HAC8 227 aa11.39□□□□□ -0.59
USP40-201ENST00000251722 ASCL3Q9NQ33 180 aa11.39□□□□□ -0.59
USP40-201ENST00000251722 hADV38S2A0JD32 116 aa11.39□□□□□ -0.59
USP40-201ENST00000251722 NPY4RP50391 375 aa11.39□□□□□ -0.59
USP40-201ENST00000251722 SAMD13Q5VXD3 122 aa11.39□□□□□ -0.59
USP40-201ENST00000251722 ADTRPQ96IZ2 230 aa11.39□□□□□ -0.59
USP40-201ENST00000251722 GGACTQ9BVM4 153 aa11.39□□□□□ -0.59
USP40-201ENST00000251722 FOXJ2Q9P0K8 574 aa11.39□□□□□ -0.59
USP40-201ENST00000251722 IFITM5A6NNB3 132 aa11.39□□□□□ -0.59
USP40-201ENST00000251722 LIPCP11150 499 aa11.39□□□□□ -0.59
USP40-201ENST00000251722 CEBPDP49716 269 aaPredicted RBP11.39□□□□□ -0.59
USP40-201ENST00000251722 STPG1Q5TH74 334 aa11.39□□□□□ -0.59
USP40-201ENST00000251722 SAT2Q96F10 170 aaPredicted RBP11.39□□□□□ -0.59
USP40-201ENST00000251722 NEIL1Q96FI4 390 aaPredicted RBP11.39□□□□□ -0.59
USP40-201ENST00000251722 TMEM56Q96MV1 263 aa11.39□□□□□ -0.59
USP40-201ENST00000251722 PDCD1LG2Q9BQ51 273 aa11.39□□□□□ -0.59
USP40-201ENST00000251722 OMGP23515 440 aa11.38□□□□□ -0.59
USP40-201ENST00000251722 C12orf73Q69YU5 71 aa11.38□□□□□ -0.59
USP40-201ENST00000251722 ZNF430Q9H8G1 570 aaPredicted RBP11.38□□□□□ -0.59
USP40-201ENST00000251722 FLVCR1Q9Y5Y0 555 aa11.38□□□□□ -0.59
USP40-201ENST00000251722 CDK5RAP2Q96SN8 1893 aa11.38□□□□□ -0.59
USP40-201ENST00000251722 IGHV5-10-1A0A0J9YXX1 117 aa11.38□□□□□ -0.59
USP40-201ENST00000251722 IFNL4K9M1U5 179 aa11.38□□□□□ -0.59
USP40-201ENST00000251722 HRASP01112 189 aa11.38□□□□□ -0.59
USP40-201ENST00000251722 OR5AC1P0C628 307 aa11.38□□□□□ -0.59
USP40-201ENST00000251722 PSMB6P28072 239 aa11.38□□□□□ -0.59
USP40-201ENST00000251722 UBE2MP61081 183 aaKnown RBP11.38□□□□□ -0.59
USP40-201ENST00000251722 LSM6P62312 80 aaKnown RBP11.38□□□□□ -0.59
USP40-201ENST00000251722 RAE1P78406 368 aaKnown RBP11.38□□□□□ -0.59
USP40-201ENST00000251722 TIGITQ495A1 244 aa11.38□□□□□ -0.59
USP40-201ENST00000251722 ZNF793Q6ZN11 406 aa11.38□□□□□ -0.59
USP40-201ENST00000251722 TMEM104Q8NE00 496 aa11.38□□□□□ -0.59
USP40-201ENST00000251722 NUDT10Q8NFP7 164 aa11.38□□□□□ -0.59
USP40-201ENST00000251722 A6NDN8 102 aa11.38□□□□□ -0.59
USP40-201ENST00000251722 CLN5O75503 358 aa11.38□□□□□ -0.59
USP40-201ENST00000251722 DHRS3O75911 302 aa11.38□□□□□ -0.59
USP40-201ENST00000251722 MRPS34P82930 218 aaKnown RBP11.38□□□□□ -0.59
USP40-201ENST00000251722 TFF2Q03403 129 aa11.38□□□□□ -0.59
USP40-201ENST00000251722 PABPC1L2AQ5JQF8 200 aa11.38□□□□□ -0.59
USP40-201ENST00000251722 SLC25A26Q70HW3 274 aa11.38□□□□□ -0.59
USP40-201ENST00000251722 OR10P1Q8NGE3 313 aa11.38□□□□□ -0.59
USP40-201ENST00000251722 OR5M9Q8NGP3 310 aa11.38□□□□□ -0.59
USP40-201ENST00000251722 POM121L2Q96KW2 1035 aa11.38□□□□□ -0.59
USP40-201ENST00000251722 BANF2Q9H503 90 aa11.38□□□□□ -0.59
USP40-201ENST00000251722 ST3GAL6Q9Y274 331 aa11.38□□□□□ -0.59
USP40-201ENST00000251722 CDX4O14627 284 aaPredicted RBP11.38□□□□□ -0.59
USP40-201ENST00000251722 POLR2IP36954 125 aaKnown RBP11.38□□□□□ -0.59
USP40-201ENST00000251722 STAC2Q6ZMT1 411 aa11.38□□□□□ -0.59
USP40-201ENST00000251722 VN1R4Q7Z5H5 301 aa11.38□□□□□ -0.59
USP40-201ENST00000251722 ARRDC1Q8N5I2 433 aa11.38□□□□□ -0.59
USP40-201ENST00000251722 NUDT11Q96G61 164 aa11.38□□□□□ -0.59
USP40-201ENST00000251722 FAM234AQ9H0X4 552 aa11.38□□□□□ -0.59
USP40-201ENST00000251722 IGHV3-15A0A0B4J1V0 119 aa11.38□□□□□ -0.59
USP40-201ENST00000251722 TRAV38-1A0A0B4J264 116 aa11.38□□□□□ -0.59
USP40-201ENST00000251722 A6NIN4 97 aa11.38□□□□□ -0.59
USP40-201ENST00000251722 SBK3P0C264 359 aa11.38□□□□□ -0.59
USP40-201ENST00000251722 SRP14P37108 136 aaKnown RBP11.38□□□□□ -0.59
USP40-201ENST00000251722 CDX1P47902 265 aaPredicted RBP11.38□□□□□ -0.59
USP40-201ENST00000251722 ZNF154Q13106 437 aa11.38□□□□□ -0.59
USP40-201ENST00000251722 FZD5Q13467 585 aa11.38□□□□□ -0.59
USP40-201ENST00000251722 OLIG3Q7RTU3 272 aa11.38□□□□□ -0.59
USP40-201ENST00000251722 FAM103A1Q9BTL3 118 aaKnown RBP11.38□□□□□ -0.59
USP40-201ENST00000251722 WNK3Q9BYP7 1800 aa11.37□□□□□ -0.59
USP40-201ENST00000251722 PIGPP57054 158 aa11.37□□□□□ -0.59
USP40-201ENST00000251722 PLP1P60201 277 aa11.37□□□□□ -0.59
USP40-201ENST00000251722 HIST3H3Q16695 136 aa11.37□□□□□ -0.59
USP40-201ENST00000251722 SLC26A10Q8NG04 563 aa11.37□□□□□ -0.59
USP40-201ENST00000251722 CYR61O00622 381 aa11.37□□□□□ -0.59
USP40-201ENST00000251722 SLC17A2O00624 439 aa11.37□□□□□ -0.59
USP40-201ENST00000251722 ISXQ2M1V0 245 aa11.37□□□□□ -0.59
USP40-201ENST00000251722 PNPLA5Q7Z6Z6 429 aaPredicted RBP11.37□□□□□ -0.59
USP40-201ENST00000251722 OR10C1Q96KK4 312 aa11.37□□□□□ -0.59
USP40-201ENST00000251722 SLC35B3Q9H1N7 401 aa11.37□□□□□ -0.59
USP40-201ENST00000251722 SLC22A13Q9Y226 551 aa11.37□□□□□ -0.59
USP40-201ENST00000251722 RPA2P15927 270 aa11.37□□□□□ -0.59
USP40-201ENST00000251722 AKR1C3P42330 323 aa11.37□□□□□ -0.59
USP40-201ENST00000251722 METAP1P53582 386 aa11.37□□□□□ -0.59
USP40-201ENST00000251722 PHLDA2Q53GA4 152 aa11.37□□□□□ -0.59
USP40-201ENST00000251722 Q7L0L9 218 aa11.37□□□□□ -0.59
USP40-201ENST00000251722 RASL12Q9NYN1 266 aa11.37□□□□□ -0.59
USP40-201ENST00000251722 OR6C3Q9NZP0 311 aa11.37□□□□□ -0.59
USP40-201ENST00000251722 OSGIN2Q9Y236 505 aa11.37□□□□□ -0.59
Retrieved 100 of 20,778 RNA–protein pairs in 29.7 ms