RNA–Protein interactions for RNA: ENST00000637985.1

CLN3-264, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 764 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-264ENST00000637985 RNF144BQ7Z419 303 aa13.22□□□□□ -0.29
CLN3-264ENST00000637985 OR10Z1Q8NGY1 313 aa13.22□□□□□ -0.29
CLN3-264ENST00000637985 ASB17Q8WXJ9 295 aa13.22□□□□□ -0.29
CLN3-264ENST00000637985 OR5P3Q8WZ94 311 aa13.22□□□□□ -0.29
CLN3-264ENST00000637985 RORBQ92753 470 aa13.22□□□□□ -0.29
CLN3-264ENST00000637985 AJUBAQ96IF1 538 aa13.22□□□□□ -0.29
CLN3-264ENST00000637985 LYZL4Q96KX0 146 aa13.22□□□□□ -0.29
CLN3-264ENST00000637985 WNT10AQ9GZT5 417 aa13.22□□□□□ -0.29
CLN3-264ENST00000637985 MEGF9Q9H1U4 602 aa13.22□□□□□ -0.29
CLN3-264ENST00000637985 PPP1R3EQ9H7J1 279 aa13.22□□□□□ -0.29
CLN3-264ENST00000637985 IGHV3OR15-7A0A075B7D8 119 aa13.21□□□□□ -0.29
CLN3-264ENST00000637985 TMEM269A0A1B0GVZ9 245 aa13.21□□□□□ -0.29
CLN3-264ENST00000637985 CCDC182A6NF36 153 aa13.21□□□□□ -0.29
CLN3-264ENST00000637985 ZNF850A8MQ14 1090 aa13.21□□□□□ -0.29
CLN3-264ENST00000637985 CDIPTO14735 213 aa13.21□□□□□ -0.29
CLN3-264ENST00000637985 ATP6V1B1P15313 513 aa13.21□□□□□ -0.29
CLN3-264ENST00000637985 MAP2K3P46734 347 aa13.21□□□□□ -0.29
CLN3-264ENST00000637985 HCCSP53701 268 aa13.21□□□□□ -0.29
CLN3-264ENST00000637985 ROM1Q03395 351 aa13.21□□□□□ -0.29
CLN3-264ENST00000637985 POU4F2Q12837 409 aa13.21□□□□□ -0.29
CLN3-264ENST00000637985 ATP6AP1Q15904 470 aa13.21□□□□□ -0.29
CLN3-264ENST00000637985 LIAT1Q6ZQX7 453 aa13.21□□□□□ -0.29
CLN3-264ENST00000637985 ZNF679Q8IYX0 411 aa13.21□□□□□ -0.29
CLN3-264ENST00000637985 OR51G2Q8NGK0 314 aa13.21□□□□□ -0.29
CLN3-264ENST00000637985 PIGCQ92535 297 aa13.21□□□□□ -0.29
CLN3-264ENST00000637985 HIST1H2AAQ96QV6 131 aa13.21□□□□□ -0.29
CLN3-264ENST00000637985 KRT84Q9NSB2 600 aa13.21□□□□□ -0.29
CLN3-264ENST00000637985 FAM206AQ9NX38 181 aa13.21□□□□□ -0.29
CLN3-264ENST00000637985 GAR1Q9NY12 217 aaKnown RBP13.21□□□□□ -0.29
CLN3-264ENST00000637985 A0A1B0GW55 424 aa13.2□□□□□ -0.3
CLN3-264ENST00000637985 G3V2T6 193 aa13.2□□□□□ -0.3
CLN3-264ENST00000637985 ANKHD1-EIF4EBP3H7C0V5 636 aaPredicted RBP13.2□□□□□ -0.3
CLN3-264ENST00000637985 PRKYO43930 277 aa13.2□□□□□ -0.3
CLN3-264ENST00000637985 DUX4L2P0CJ85 424 aa13.2□□□□□ -0.3
CLN3-264ENST00000637985 DUX4L3P0CJ86 424 aa13.2□□□□□ -0.3
CLN3-264ENST00000637985 DUX4L4P0CJ87 422 aa13.2□□□□□ -0.3
CLN3-264ENST00000637985 DUX4L5P0CJ88 424 aa13.2□□□□□ -0.3
CLN3-264ENST00000637985 DUX4L6P0CJ89 424 aa13.2□□□□□ -0.3
CLN3-264ENST00000637985 DUX4L7P0CJ90 424 aa13.2□□□□□ -0.3
CLN3-264ENST00000637985 FASP25445 335 aa13.2□□□□□ -0.3
CLN3-264ENST00000637985 WDR38Q5JTN6 314 aa13.2□□□□□ -0.3
CLN3-264ENST00000637985 ATPAF1Q5TC12 328 aaPredicted RBP13.2□□□□□ -0.3
CLN3-264ENST00000637985 DUX4L9Q6RFH8 374 aaPredicted RBP13.2□□□□□ -0.3
CLN3-264ENST00000637985 MEPCEQ7L2J0 689 aaKnown RBP13.2□□□□□ -0.3
CLN3-264ENST00000637985 ZDHHC23Q8IYP9 409 aa13.2□□□□□ -0.3
CLN3-264ENST00000637985 FAM81AQ8TBF8 368 aa13.2□□□□□ -0.3
CLN3-264ENST00000637985 RNF170Q96K19 258 aa13.2□□□□□ -0.3
CLN3-264ENST00000637985 OR8B4Q96RC9 309 aa13.2□□□□□ -0.3
CLN3-264ENST00000637985 CCL13Q99616 98 aa13.2□□□□□ -0.3
CLN3-264ENST00000637985 DNTTIP1Q9H147 329 aa13.2□□□□□ -0.3
CLN3-264ENST00000637985 HAO2Q9NYQ3 351 aa13.2□□□□□ -0.3
CLN3-264ENST00000637985 H2AFY2Q9P0M6 372 aaPredicted RBP13.2□□□□□ -0.3
CLN3-264ENST00000637985 DUX4Q9UBX2 424 aa13.2□□□□□ -0.3
CLN3-264ENST00000637985 ENOPH1Q9UHY7 261 aa13.2□□□□□ -0.3
CLN3-264ENST00000637985 NDUFB3O43676 98 aa13.19□□□□□ -0.3
CLN3-264ENST00000637985 MRPL3P09001 348 aaKnown RBP13.19□□□□□ -0.3
CLN3-264ENST00000637985 PF4V1P10720 104 aa13.19□□□□□ -0.3
CLN3-264ENST00000637985 RIDAP52758 137 aaKnown RBP13.19□□□□□ -0.3
CLN3-264ENST00000637985 ACTR3P61158 418 aa13.19□□□□□ -0.3
CLN3-264ENST00000637985 EFNB1P98172 346 aa13.19□□□□□ -0.3
CLN3-264ENST00000637985 CD83Q01151 205 aa13.19□□□□□ -0.3
CLN3-264ENST00000637985 ZNF829Q3KNS6 432 aaPredicted RBP13.19□□□□□ -0.3
CLN3-264ENST00000637985 SLX4IPQ5VYV7 408 aa13.19□□□□□ -0.3
CLN3-264ENST00000637985 NXNL2Q5VZ03 156 aa13.19□□□□□ -0.3
CLN3-264ENST00000637985 NCR3LG1Q68D85 454 aa13.19□□□□□ -0.3
CLN3-264ENST00000637985 KDM4DQ6B0I6 523 aa13.19□□□□□ -0.3
CLN3-264ENST00000637985 KCTD8Q6ZWB6 473 aa13.19□□□□□ -0.3
CLN3-264ENST00000637985 ZDHHC13Q8IUH4 622 aa13.19□□□□□ -0.3
CLN3-264ENST00000637985 MUC7Q8TAX7 377 aa13.19□□□□□ -0.3
CLN3-264ENST00000637985 PIFOQ8TCI5 191 aa13.19□□□□□ -0.3
CLN3-264ENST00000637985 HPSE2Q8WWQ2 592 aa13.19□□□□□ -0.3
CLN3-264ENST00000637985 RPL3LQ92901 407 aaKnown RBP13.19□□□□□ -0.3
CLN3-264ENST00000637985 DUS3LQ96G46 650 aaKnown RBP13.19□□□□□ -0.3
CLN3-264ENST00000637985 CNN2Q99439 309 aaKnown RBP13.19□□□□□ -0.3
CLN3-264ENST00000637985 MNTQ99583 582 aa13.19□□□□□ -0.3
CLN3-264ENST00000637985 NKX3-1Q99801 234 aaPredicted RBP13.19□□□□□ -0.3
CLN3-264ENST00000637985 PBOV1Q9GZY1 135 aa13.19□□□□□ -0.3
CLN3-264ENST00000637985 GABARAPL1Q9H0R8 117 aa13.19□□□□□ -0.3
CLN3-264ENST00000637985 AP4S1Q9Y587 144 aa13.19□□□□□ -0.3
CLN3-264ENST00000637985 A0A1W2PRX2 142 aa13.18□□□□□ -0.3
CLN3-264ENST00000637985 ZAR1LA6NP61 321 aa13.18□□□□□ -0.3
CLN3-264ENST00000637985 PSMD9O00233 223 aa13.18□□□□□ -0.3
CLN3-264ENST00000637985 IGLV3-1P01715 115 aa13.18□□□□□ -0.3
CLN3-264ENST00000637985 FCGR1AP12314 374 aa13.18□□□□□ -0.3
CLN3-264ENST00000637985 TGM4P49221 684 aa13.18□□□□□ -0.3
CLN3-264ENST00000637985 GNG3P63215 75 aa13.18□□□□□ -0.3
CLN3-264ENST00000637985 RIPPLY1Q0D2K3 151 aa13.18□□□□□ -0.3
CLN3-264ENST00000637985 CEACAM21Q3KPI0 293 aa13.18□□□□□ -0.3
CLN3-264ENST00000637985 LRRC10Q5BKY1 277 aa13.18□□□□□ -0.3
CLN3-264ENST00000637985 AADACL4Q5VUY2 407 aa13.18□□□□□ -0.3
CLN3-264ENST00000637985 C12orf73Q69YU5 71 aa13.18□□□□□ -0.3
CLN3-264ENST00000637985 STUMQ69YW2 141 aa13.18□□□□□ -0.3
CLN3-264ENST00000637985 TCEANCQ8N8B7 351 aa13.18□□□□□ -0.3
CLN3-264ENST00000637985 C8orf46Q8TAG6 207 aa13.18□□□□□ -0.3
CLN3-264ENST00000637985 TMEM163Q8TC26 289 aa13.18□□□□□ -0.3
CLN3-264ENST00000637985 RAB3IPQ96QF0 476 aaPredicted RBP13.18□□□□□ -0.3
CLN3-264ENST00000637985 DCTN5Q9BTE1 182 aa13.18□□□□□ -0.3
CLN3-264ENST00000637985 FGF23Q9GZV9 251 aaPredicted RBP13.18□□□□□ -0.3
CLN3-264ENST00000637985 INPP5EQ9NRR6 644 aa13.18□□□□□ -0.3
CLN3-264ENST00000637985 NUFIP1Q9UHK0 495 aaKnown RBP13.18□□□□□ -0.3
Retrieved 100 of 20,778 RNA–protein pairs in 38.9 ms