RNA–Protein interactions for RNA: ENST00000636759.1

SCN1A-213, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

TSL 5

Gene SCN1A, Length 3,606 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-213ENST00000636759 SERPINA7P05543 415 aa6.05□□□□□ -1.44
SCN1A-213ENST00000636759 HINT1P49773 126 aaPredicted RBP6.05□□□□□ -1.44
SCN1A-213ENST00000636759 TPPP2P59282 170 aa6.05□□□□□ -1.44
SCN1A-213ENST00000636759 ID2Q02363 134 aa6.05□□□□□ -1.44
SCN1A-213ENST00000636759 CCSMST1Q4G0I0 132 aa6.05□□□□□ -1.44
SCN1A-213ENST00000636759 PLXDC2Q6UX71 529 aa6.05□□□□□ -1.44
SCN1A-213ENST00000636759 PFN4Q8NHR9 129 aa6.05□□□□□ -1.44
SCN1A-213ENST00000636759 ERGIC1Q969X5 290 aa6.05□□□□□ -1.44
SCN1A-213ENST00000636759 LOXL4Q96JB6 756 aa6.05□□□□□ -1.44
SCN1A-213ENST00000636759 FAM71F1Q96KD3 344 aaPredicted RBP6.05□□□□□ -1.44
SCN1A-213ENST00000636759 PATZ1Q9HBE1 687 aaKnown RBP6.05□□□□□ -1.44
SCN1A-213ENST00000636759 TMEM106BQ9NUM4 274 aa6.05□□□□□ -1.44
SCN1A-213ENST00000636759 ST3GAL6Q9Y274 331 aa6.05□□□□□ -1.44
SCN1A-213ENST00000636759 EML5Q05BV3 1969 aa6.05□□□□□ -1.44
SCN1A-213ENST00000636759 DMDP11532 3685 aa6.05□□□□□ -1.44
SCN1A-213ENST00000636759 A0A1W2PR48 441 aa6.05□□□□□ -1.44
SCN1A-213ENST00000636759 E5RGE8 158 aa6.05□□□□□ -1.44
SCN1A-213ENST00000636759 FGF17O60258 216 aa6.05□□□□□ -1.44
SCN1A-213ENST00000636759 SYNGR4O95473 234 aa6.05□□□□□ -1.44
SCN1A-213ENST00000636759 PI3P19957 117 aa6.05□□□□□ -1.44
SCN1A-213ENST00000636759 GZMHP20718 246 aa6.05□□□□□ -1.44
SCN1A-213ENST00000636759 MSR1P21757 451 aa6.05□□□□□ -1.44
SCN1A-213ENST00000636759 CCR2P41597 374 aa6.05□□□□□ -1.44
SCN1A-213ENST00000636759 NCBP2P52298 156 aaKnown RBP eCLIP6.05□□□□□ -1.442e-9■□□□□ 10.6
SCN1A-213ENST00000636759 ADIRFQ15847 76 aa6.05□□□□□ -1.44
SCN1A-213ENST00000636759 CLEC12BQ2HXU8 276 aa6.05□□□□□ -1.44
SCN1A-213ENST00000636759 PHF19Q5T6S3 580 aa6.05□□□□□ -1.44
SCN1A-213ENST00000636759 ASTLQ6HA08 431 aaPredicted RBP6.05□□□□□ -1.44
SCN1A-213ENST00000636759 ADGRE4PQ86SQ3 457 aa6.05□□□□□ -1.44
SCN1A-213ENST00000636759 ZFP62Q8NB50 900 aaPredicted RBP6.05□□□□□ -1.44
SCN1A-213ENST00000636759 PLPP7Q8NBV4 271 aa6.05□□□□□ -1.44
SCN1A-213ENST00000636759 GRHL3Q8TE85 626 aa6.05□□□□□ -1.44
SCN1A-213ENST00000636759 RNF128Q8TEB7 428 aa6.05□□□□□ -1.44
SCN1A-213ENST00000636759 GLYATL1Q969I3 302 aa6.05□□□□□ -1.44
SCN1A-213ENST00000636759 RBMXL1Q96E39 390 aaKnown RBP6.05□□□□□ -1.44
SCN1A-213ENST00000636759 OR7D2Q96RA2 312 aa6.05□□□□□ -1.44
SCN1A-213ENST00000636759 MACROD1Q9BQ69 325 aa6.05□□□□□ -1.44
SCN1A-213ENST00000636759 SH3BGRL3Q9H299 93 aa6.05□□□□□ -1.44
SCN1A-213ENST00000636759 ELL3Q9HB65 397 aaPredicted RBP6.05□□□□□ -1.44
SCN1A-213ENST00000636759 SLC35D1Q9NTN3 355 aa6.05□□□□□ -1.44
SCN1A-213ENST00000636759 CXXC1Q9P0U4 656 aaPredicted RBP6.05□□□□□ -1.44
SCN1A-213ENST00000636759 HS3ST2Q9Y278 367 aa6.05□□□□□ -1.44
SCN1A-213ENST00000636759 NSG2Q9Y328 171 aa6.05□□□□□ -1.44
SCN1A-213ENST00000636759 GON4LQ3T8J9 2241 aa6.05□□□□□ -1.44
SCN1A-213ENST00000636759 HMGN2P05204 90 aaKnown RBP6.05□□□□□ -1.44
SCN1A-213ENST00000636759 LAMP2P13473 410 aa6.05□□□□□ -1.44
SCN1A-213ENST00000636759 RPS4Y1P22090 263 aaKnown RBP6.05□□□□□ -1.44
SCN1A-213ENST00000636759 CD70P32970 193 aa6.05□□□□□ -1.44
SCN1A-213ENST00000636759 APOBEC1P41238 236 aaKnown RBP6.05□□□□□ -1.44
SCN1A-213ENST00000636759 CCL20P78556 96 aa6.05□□□□□ -1.44
SCN1A-213ENST00000636759 AGERQ15109 404 aa6.05□□□□□ -1.44
SCN1A-213ENST00000636759 SNAI3Q3KNW1 292 aa6.05□□□□□ -1.44
SCN1A-213ENST00000636759 ZNF506Q5JVG8 444 aa6.05□□□□□ -1.44
SCN1A-213ENST00000636759 TPTE2P1Q5T6R2 138 aa6.05□□□□□ -1.44
SCN1A-213ENST00000636759 TEX43Q6ZNM6 134 aa6.05□□□□□ -1.44
SCN1A-213ENST00000636759 TMEM123Q8N131 208 aa6.05□□□□□ -1.44
SCN1A-213ENST00000636759 GVQW1Q8N7I0 195 aa6.05□□□□□ -1.44
SCN1A-213ENST00000636759 CMTM2Q8TAZ6 248 aa6.05□□□□□ -1.44
SCN1A-213ENST00000636759 PTPMT1Q8WUK0 201 aaPredicted RBP6.05□□□□□ -1.44
SCN1A-213ENST00000636759 KTI12Q96EK9 354 aaPredicted RBP6.05□□□□□ -1.44
SCN1A-213ENST00000636759 TMEM56Q96MV1 263 aa6.05□□□□□ -1.44
SCN1A-213ENST00000636759 SLC46A2Q9BY10 475 aa6.05□□□□□ -1.44
SCN1A-213ENST00000636759 Q9N2K0 584 aa6.05□□□□□ -1.44
SCN1A-213ENST00000636759 RXFP3Q9NSD7 469 aa6.05□□□□□ -1.44
SCN1A-213ENST00000636759 SERGEFQ9UGK8 458 aa6.05□□□□□ -1.44
SCN1A-213ENST00000636759 TMEM56-RWDD3S4R434 201 aa6.05□□□□□ -1.44
SCN1A-213ENST00000636759 MDC1Q14676 2089 aaKnown RBP6.04□□□□□ -1.44
SCN1A-213ENST00000636759 SERTM2A0A1B0GWG4 89 aa6.04□□□□□ -1.44
SCN1A-213ENST00000636759 TMEM212A6NML5 194 aa6.04□□□□□ -1.44
SCN1A-213ENST00000636759 K7N7A8 449 aa6.04□□□□□ -1.44
SCN1A-213ENST00000636759 IFNL4K9M1U5 179 aa6.04□□□□□ -1.44
SCN1A-213ENST00000636759 GALR1P47211 349 aa6.04□□□□□ -1.44
SCN1A-213ENST00000636759 GABRA2P47869 451 aa6.04□□□□□ -1.44
SCN1A-213ENST00000636759 TLE3Q04726 772 aa6.04□□□□□ -1.44
SCN1A-213ENST00000636759 GLYATL3Q5SZD4 288 aa6.04□□□□□ -1.44
SCN1A-213ENST00000636759 SAMD13Q5VXD3 122 aa6.04□□□□□ -1.44
SCN1A-213ENST00000636759 KLHDC1Q8N7A1 406 aa6.04□□□□□ -1.44
SCN1A-213ENST00000636759 OR8G5Q8NG78 346 aa6.04□□□□□ -1.44
SCN1A-213ENST00000636759 OR10S1Q8NGN2 331 aa6.04□□□□□ -1.44
SCN1A-213ENST00000636759 OR2V1Q8NHB1 315 aa6.04□□□□□ -1.44
SCN1A-213ENST00000636759 MAGT1Q9H0U3 335 aa6.04□□□□□ -1.44
SCN1A-213ENST00000636759 IL23AQ9NPF7 189 aa6.04□□□□□ -1.44
SCN1A-213ENST00000636759 C1orf123Q9NWV4 160 aa6.04□□□□□ -1.44
SCN1A-213ENST00000636759 ZNF586Q9NXT0 402 aa6.04□□□□□ -1.44
SCN1A-213ENST00000636759 CLDND1Q9NY35 253 aa6.04□□□□□ -1.44
SCN1A-213ENST00000636759 ZNF319Q9P2F9 582 aa6.04□□□□□ -1.44
SCN1A-213ENST00000636759 CLN8Q9UBY8 286 aa6.04□□□□□ -1.44
SCN1A-213ENST00000636759 RCL1Q9Y2P8 373 aaKnown RBP6.04□□□□□ -1.44
SCN1A-213ENST00000636759 TRBV5-5A0A0J9YX44 114 aa6.04□□□□□ -1.44
SCN1A-213ENST00000636759 SPINT1O43278 529 aa6.04□□□□□ -1.44
SCN1A-213ENST00000636759 DEDDO75618 318 aa6.04□□□□□ -1.44
SCN1A-213ENST00000636759 OR6A2O95222 327 aa6.04□□□□□ -1.44
SCN1A-213ENST00000636759 GOSR1O95249 250 aa6.04□□□□□ -1.44
SCN1A-213ENST00000636759 KNG1P01042 644 aa6.04□□□□□ -1.44
SCN1A-213ENST00000636759 ACRP10323 421 aa6.04□□□□□ -1.44
SCN1A-213ENST00000636759 PRLHRP49683 370 aa6.04□□□□□ -1.44
SCN1A-213ENST00000636759 BLKP51451 505 aa6.04□□□□□ -1.44
SCN1A-213ENST00000636759 CLDN18P56856 261 aa6.04□□□□□ -1.44
SCN1A-213ENST00000636759 RPS20P60866 119 aaKnown RBP6.04□□□□□ -1.44
SCN1A-213ENST00000636759 MESP2Q0VG99 397 aa6.04□□□□□ -1.44
Retrieved 100 of 20,778 RNA–protein pairs in 33 ms