RNA–Protein interactions for RNA: ENST00000635578.1

SMARCB1-209, Transcript of SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily b, member 1, humanhuman

TSL 1 (best)

Gene SMARCB1, Length 242 nt, Biotype protein coding, Subcellular localisation Cytosol, Exosome, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCB1-209ENST00000635578 DMAC2Q9NW81 257 aa0.64□□□□□ -2.31
SMARCB1-209ENST00000635578 ZNHIT6Q9NWK9 470 aaKnown RBP0.64□□□□□ -2.31
SMARCB1-209ENST00000635578 PIPOXQ9P0Z9 390 aa0.64□□□□□ -2.31
SMARCB1-209ENST00000635578 CLCF1Q9UBD9 225 aa0.64□□□□□ -2.31
SMARCB1-209ENST00000635578 ZNF629Q9UEG4 869 aaPredicted RBP0.64□□□□□ -2.31
SMARCB1-209ENST00000635578 SUN2Q9UH99 717 aa0.64□□□□□ -2.31
SMARCB1-209ENST00000635578 TAC3Q9UHF0 121 aa0.64□□□□□ -2.31
SMARCB1-209ENST00000635578 STOML2Q9UJZ1 356 aa0.64□□□□□ -2.31
SMARCB1-209ENST00000635578 CLEC4AQ9UMR7 237 aa0.64□□□□□ -2.31
SMARCB1-209ENST00000635578 RASD1Q9Y272 281 aa0.64□□□□□ -2.31
SMARCB1-209ENST00000635578 MRPS7Q9Y2R9 242 aaKnown RBP0.64□□□□□ -2.31
SMARCB1-209ENST00000635578 YTHDF2Q9Y5A9 579 aaKnown RBP0.64□□□□□ -2.31
SMARCB1-209ENST00000635578 HEY1Q9Y5J3 304 aa0.64□□□□□ -2.31
SMARCB1-209ENST00000635578 FAM215AQ9Y5M1 114 aa0.64□□□□□ -2.31
SMARCB1-209ENST00000635578 ARL5AQ9Y689 179 aa0.64□□□□□ -2.31
SMARCB1-209ENST00000635578 TENM3Q9P273 2699 aa0.64□□□□□ -2.31
SMARCB1-209ENST00000635578 STARD9Q9P2P6 4700 aa0.63□□□□□ -2.31
SMARCB1-209ENST00000635578 TGP01266 2768 aa0.63□□□□□ -2.31
SMARCB1-209ENST00000635578 DYNC2H1Q8NCM8 4307 aaKnown RBP0.63□□□□□ -2.31
SMARCB1-209ENST00000635578 HYDINQ4G0P3 5121 aa0.63□□□□□ -2.31
SMARCB1-209ENST00000635578 ANK2Q01484 3957 aa0.63□□□□□ -2.31
SMARCB1-209ENST00000635578 MXRA5Q9NR99 2828 aa0.63□□□□□ -2.31
SMARCB1-209ENST00000635578 C15orf38-AP3S2A0A0A6YYH1 394 aa0.63□□□□□ -2.31
SMARCB1-209ENST00000635578 A0A0B4J2A0 478 aa0.63□□□□□ -2.31
SMARCB1-209ENST00000635578 IGKV1-8A0A0C4DH67 115 aa0.63□□□□□ -2.31
SMARCB1-209ENST00000635578 A0A0J9YY10 115 aa0.63□□□□□ -2.31
SMARCB1-209ENST00000635578 TRBV11-1A0A0K0K1C0 115 aa0.63□□□□□ -2.31
SMARCB1-209ENST00000635578 GLYATL1P3A0A0U1RQE8 302 aa0.63□□□□□ -2.31
SMARCB1-209ENST00000635578 CXorf51AA0A1B0GTR3 108 aa0.63□□□□□ -2.31
SMARCB1-209ENST00000635578 A0A1B0GVI7 797 aa0.63□□□□□ -2.31
SMARCB1-209ENST00000635578 A0A1W2PPV9 198 aa0.63□□□□□ -2.31
SMARCB1-209ENST00000635578 PLAC8L1A1L4L8 177 aa0.63□□□□□ -2.31
SMARCB1-209ENST00000635578 LRCOL1A6NCL2 159 aa0.63□□□□□ -2.31
SMARCB1-209ENST00000635578 BTBD17A6NE02 478 aa0.63□□□□□ -2.31
SMARCB1-209ENST00000635578 C9J4A7 227 aa0.63□□□□□ -2.31
SMARCB1-209ENST00000635578 E7EQ34 232 aa0.63□□□□□ -2.31
SMARCB1-209ENST00000635578 F6UB75 175 aa0.63□□□□□ -2.31
SMARCB1-209ENST00000635578 H0YC42 278 aa0.63□□□□□ -2.31
SMARCB1-209ENST00000635578 HSD17B6O14756 317 aa0.63□□□□□ -2.31
SMARCB1-209ENST00000635578 POLR1CO15160 346 aaPredicted RBP0.63□□□□□ -2.31
SMARCB1-209ENST00000635578 CETN3O15182 167 aa0.63□□□□□ -2.31
SMARCB1-209ENST00000635578 NVLO15381 856 aaKnown RBP0.63□□□□□ -2.31
SMARCB1-209ENST00000635578 RBFOX2O43251 390 aaKnown RBP eCLIP0.63□□□□□ -2.318e-8■■■■■ 34.6
SMARCB1-209ENST00000635578 PSTPIP1O43586 416 aa0.63□□□□□ -2.31
SMARCB1-209ENST00000635578 KDELR3O43731 214 aa0.63□□□□□ -2.31
SMARCB1-209ENST00000635578 OR1I1O60431 355 aa0.63□□□□□ -2.31
SMARCB1-209ENST00000635578 DPM1O60762 260 aa0.63□□□□□ -2.31
SMARCB1-209ENST00000635578 SLC19A2O60779 497 aa0.63□□□□□ -2.31
SMARCB1-209ENST00000635578 RAMP3O60896 148 aa0.63□□□□□ -2.31
SMARCB1-209ENST00000635578 CLDN11O75508 207 aa0.63□□□□□ -2.31
SMARCB1-209ENST00000635578 EEDO75530 441 aaKnown RBP0.63□□□□□ -2.31
SMARCB1-209ENST00000635578 PALMO75781 387 aa0.63□□□□□ -2.31
SMARCB1-209ENST00000635578 OR2B3O76000 313 aa0.63□□□□□ -2.31
SMARCB1-209ENST00000635578 RCBTB2O95199 551 aa0.63□□□□□ -2.31
SMARCB1-209ENST00000635578 SMC2O95347 1197 aa0.63□□□□□ -2.31
SMARCB1-209ENST00000635578 IGLV2-23P01705 113 aa0.63□□□□□ -2.31
SMARCB1-209ENST00000635578 BGLAPP02818 100 aa0.63□□□□□ -2.31
SMARCB1-209ENST00000635578 IL4P05112 153 aa0.63□□□□□ -2.31
SMARCB1-209ENST00000635578 SERPIND1P05546 499 aa0.63□□□□□ -2.31
SMARCB1-209ENST00000635578 IGKV4-1P06312 121 aa0.63□□□□□ -2.31
SMARCB1-209ENST00000635578 IVLP07476 585 aa0.63□□□□□ -2.31
SMARCB1-209ENST00000635578 PAEPP09466 180 aa0.63□□□□□ -2.31
SMARCB1-209ENST00000635578 UBTFL6P0CB48 400 aaPredicted RBP0.63□□□□□ -2.31
SMARCB1-209ENST00000635578 CCL3P10147 92 aa0.63□□□□□ -2.31
SMARCB1-209ENST00000635578 CD99P14209 185 aa0.63□□□□□ -2.31
SMARCB1-209ENST00000635578 UCHL3P15374 230 aa0.63□□□□□ -2.31
SMARCB1-209ENST00000635578 MUC1P15941 1255 aaPredicted RBP0.63□□□□□ -2.31
SMARCB1-209ENST00000635578 ZNF7P17097 686 aaPredicted RBP0.63□□□□□ -2.31
SMARCB1-209ENST00000635578 NELFEP18615 380 aaKnown RBP0.63□□□□□ -2.31
SMARCB1-209ENST00000635578 FOXN2P32314 431 aa0.63□□□□□ -2.31
SMARCB1-209ENST00000635578 SPAM1P38567 509 aa0.63□□□□□ -2.31
SMARCB1-209ENST00000635578 DDOSTP39656 456 aa0.63□□□□□ -2.31
SMARCB1-209ENST00000635578 CEACAM6P40199 344 aa0.63□□□□□ -2.31
SMARCB1-209ENST00000635578 CDKN2BP42772 138 aa0.63□□□□□ -2.31
SMARCB1-209ENST00000635578 GPR6P46095 362 aaPredicted RBP0.63□□□□□ -2.31
SMARCB1-209ENST00000635578 CDKN1BP46527 198 aa0.63□□□□□ -2.31
SMARCB1-209ENST00000635578 SLCO1A2P46721 670 aa0.63□□□□□ -2.31
SMARCB1-209ENST00000635578 RFX3P48380 749 aa0.63□□□□□ -2.31
SMARCB1-209ENST00000635578 CSNK1A1P48729 337 aa0.63□□□□□ -2.31
SMARCB1-209ENST00000635578 SPINT3P49223 89 aa0.63□□□□□ -2.31
SMARCB1-209ENST00000635578 PRLHRP49683 370 aa0.63□□□□□ -2.31
SMARCB1-209ENST00000635578 CCR8P51685 355 aa0.63□□□□□ -2.31
SMARCB1-209ENST00000635578 NCBP2P52298 156 aaKnown RBP eCLIP0.63□□□□□ -2.31
SMARCB1-209ENST00000635578 ZNF140P52738 457 aaPredicted RBP0.63□□□□□ -2.31
SMARCB1-209ENST00000635578 FGF8P55075 233 aaPredicted RBP0.63□□□□□ -2.31
SMARCB1-209ENST00000635578 RAB8AP61006 207 aa0.63□□□□□ -2.31
SMARCB1-209ENST00000635578 AP1S1P61966 158 aa0.63□□□□□ -2.31
SMARCB1-209ENST00000635578 NUTF2P61970 127 aaKnown RBP0.63□□□□□ -2.31
SMARCB1-209ENST00000635578 YWHAEP62258 255 aaKnown RBP0.63□□□□□ -2.31
SMARCB1-209ENST00000635578 BTG2P78543 158 aa0.63□□□□□ -2.31
SMARCB1-209ENST00000635578 PITPNAQ00169 270 aa0.63□□□□□ -2.31
SMARCB1-209ENST00000635578 CDK16Q00536 496 aa0.63□□□□□ -2.31
SMARCB1-209ENST00000635578 PLGLB1Q02325 96 aa0.63□□□□□ -2.31
SMARCB1-209ENST00000635578 PRB3Q04118 309 aaPredicted RBP0.63□□□□□ -2.31
SMARCB1-209ENST00000635578 GLO1Q04760 184 aa0.63□□□□□ -2.31
SMARCB1-209ENST00000635578 TFF3Q07654 80 aa0.63□□□□□ -2.31
SMARCB1-209ENST00000635578 DMTNQ08495 405 aa0.63□□□□□ -2.31
SMARCB1-209ENST00000635578 MRPL28Q13084 256 aaKnown RBP0.63□□□□□ -2.31
SMARCB1-209ENST00000635578 STX5Q13190 355 aa0.63□□□□□ -2.31
SMARCB1-209ENST00000635578 EIF3IQ13347 325 aaKnown RBP0.63□□□□□ -2.31
Retrieved 100 of 20,778 RNA–protein pairs in 53.3 ms