RNA–Protein interactions for RNA: ENST00000619445.1

UPF3B-204, Transcript of UPF3B, regulator of nonsense mediated mRNA decay, humanhuman

TSL 5 BASIC

Gene UPF3B, Length 1,385 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3B-204ENST00000619445 CLPTM1LQ96KA5 538 aa9.74□□□□□ -0.85
UPF3B-204ENST00000619445 CDCA4Q9BXL8 241 aa9.74□□□□□ -0.85
UPF3B-204ENST00000619445 USE1Q9NZ43 259 aa9.74□□□□□ -0.85
UPF3B-204ENST00000619445 MAB21L2Q9Y586 359 aa9.74□□□□□ -0.85
UPF3B-204ENST00000619445 A0A0G2JK05 382 aa9.73□□□□□ -0.85
UPF3B-204ENST00000619445 TCRBV3S1A0A5B6 114 aa9.73□□□□□ -0.85
UPF3B-204ENST00000619445 RFPL4AA6NLU0 287 aa9.73□□□□□ -0.85
UPF3B-204ENST00000619445 ZNF670-ZNF695F2Z2N8 137 aa9.73□□□□□ -0.85
UPF3B-204ENST00000619445 LOC110117498-PIK3R3F6TDL0 507 aa9.73□□□□□ -0.85
UPF3B-204ENST00000619445 RFPL4AL1F8VTS6 287 aa9.73□□□□□ -0.85
UPF3B-204ENST00000619445 NXPH2O95156 264 aa9.73□□□□□ -0.85
UPF3B-204ENST00000619445 RBP4P02753 201 aa9.73□□□□□ -0.85
UPF3B-204ENST00000619445 CSF1P09603 554 aa9.73□□□□□ -0.85
UPF3B-204ENST00000619445 PGA5P0DJD9 388 aa9.73□□□□□ -0.85
UPF3B-204ENST00000619445 FAHP16930 419 aa9.73□□□□□ -0.85
UPF3B-204ENST00000619445 PRKACGP22612 351 aa9.73□□□□□ -0.85
UPF3B-204ENST00000619445 PRDX2P32119 198 aa9.73□□□□□ -0.85
UPF3B-204ENST00000619445 KIR2DS4P43632 304 aa9.73□□□□□ -0.85
UPF3B-204ENST00000619445 HAAOP46952 286 aa9.73□□□□□ -0.85
UPF3B-204ENST00000619445 ERVFRD-1P60508 538 aa9.73□□□□□ -0.85
UPF3B-204ENST00000619445 EGR3Q06889 387 aa9.73□□□□□ -0.85
UPF3B-204ENST00000619445 KLRD1Q13241 179 aa9.73□□□□□ -0.85
UPF3B-204ENST00000619445 BCL2L15Q5TBC7 163 aa9.73□□□□□ -0.85
UPF3B-204ENST00000619445 NXNL2Q5VZ03 156 aa9.73□□□□□ -0.85
UPF3B-204ENST00000619445 TMEM42Q69YG0 159 aa9.73□□□□□ -0.85
UPF3B-204ENST00000619445 FAHD1Q6P587 224 aa9.73□□□□□ -0.85
UPF3B-204ENST00000619445 ZNF322Q6U7Q0 402 aaPredicted RBP9.73□□□□□ -0.85
UPF3B-204ENST00000619445 MEPCEQ7L2J0 689 aaKnown RBP9.73□□□□□ -0.85
UPF3B-204ENST00000619445 GID4Q8IVV7 300 aa9.73□□□□□ -0.85
UPF3B-204ENST00000619445 OR2T6Q8NHC8 308 aa9.73□□□□□ -0.85
UPF3B-204ENST00000619445 SSX3Q99909 188 aa9.73□□□□□ -0.85
UPF3B-204ENST00000619445 NPFFR1Q9GZQ6 430 aa9.73□□□□□ -0.85
UPF3B-204ENST00000619445 FGF23Q9GZV9 251 aaPredicted RBP9.73□□□□□ -0.85
UPF3B-204ENST00000619445 SEMA6AQ9H2E6 1030 aa9.73□□□□□ -0.85
UPF3B-204ENST00000619445 PPA2Q9H2U2 334 aa9.73□□□□□ -0.85
UPF3B-204ENST00000619445 SNX5Q9Y5X3 404 aa9.73□□□□□ -0.85
UPF3B-204ENST00000619445 A0A1W2PRD5 423 aa9.72□□□□□ -0.85
UPF3B-204ENST00000619445 A0A1W2PRF3 423 aa9.72□□□□□ -0.85
UPF3B-204ENST00000619445 A0A1W2PRM7 423 aa9.72□□□□□ -0.85
UPF3B-204ENST00000619445 CCDC182A6NF36 153 aa9.72□□□□□ -0.85
UPF3B-204ENST00000619445 H3BUI4 141 aa9.72□□□□□ -0.85
UPF3B-204ENST00000619445 H3BUX3 64 aa9.72□□□□□ -0.85
UPF3B-204ENST00000619445 MPZP25189 248 aa9.72□□□□□ -0.85
UPF3B-204ENST00000619445 KRTAP10-3P60369 221 aa9.72□□□□□ -0.85
UPF3B-204ENST00000619445 HERPUD1Q15011 391 aa9.72□□□□□ -0.85
UPF3B-204ENST00000619445 PTGES3Q15185 160 aaKnown RBP9.72□□□□□ -0.85
UPF3B-204ENST00000619445 TMEM236Q5W0B7 351 aa9.72□□□□□ -0.85
UPF3B-204ENST00000619445 SLC35E4Q6ICL7 350 aa9.72□□□□□ -0.85
UPF3B-204ENST00000619445 ELMOD2Q8IZ81 293 aa9.72□□□□□ -0.85
UPF3B-204ENST00000619445 HS3ST5Q8IZT8 346 aa9.72□□□□□ -0.85
UPF3B-204ENST00000619445 FOXRED1Q96CU9 486 aaPredicted RBP9.72□□□□□ -0.85
UPF3B-204ENST00000619445 NRIP2Q9BQI9 281 aa9.72□□□□□ -0.85
UPF3B-204ENST00000619445 PKIBQ9C010 78 aa9.72□□□□□ -0.85
UPF3B-204ENST00000619445 KRT84Q9NSB2 600 aa9.72□□□□□ -0.85
UPF3B-204ENST00000619445 CLN6Q9NWW5 311 aa9.72□□□□□ -0.85
UPF3B-204ENST00000619445 GTF2A1LQ9UNN4 478 aa9.72□□□□□ -0.85
UPF3B-204ENST00000619445 SLC7A11Q9UPY5 501 aa9.72□□□□□ -0.85
UPF3B-204ENST00000619445 R4GMQ9 66 aa9.72□□□□□ -0.85
UPF3B-204ENST00000619445 PQLC2LA1A4F0 135 aa9.71□□□□□ -0.86
UPF3B-204ENST00000619445 PSMD9O00233 223 aa9.71□□□□□ -0.86
UPF3B-204ENST00000619445 DNAJC8O75937 253 aaPredicted RBP9.71□□□□□ -0.86
UPF3B-204ENST00000619445 TTRP02766 147 aa9.71□□□□□ -0.86
UPF3B-204ENST00000619445 KRT8P05787 483 aa9.71□□□□□ -0.86
UPF3B-204ENST00000619445 MRPL3P09001 348 aaKnown RBP9.71□□□□□ -0.86
UPF3B-204ENST00000619445 HCCSP53701 268 aa9.71□□□□□ -0.86
UPF3B-204ENST00000619445 CXCR4P61073 352 aa9.71□□□□□ -0.86
UPF3B-204ENST00000619445 IL24Q13007 206 aa9.71□□□□□ -0.86
UPF3B-204ENST00000619445 Q6ZSR3 168 aa9.71□□□□□ -0.86
UPF3B-204ENST00000619445 SLC35F2Q8IXU6 374 aa9.71□□□□□ -0.86
UPF3B-204ENST00000619445 OR2T27Q8NH04 317 aa9.71□□□□□ -0.86
UPF3B-204ENST00000619445 C10orf35Q96D05 121 aa9.71□□□□□ -0.86
UPF3B-204ENST00000619445 PLEKHA1Q9HB21 404 aa9.71□□□□□ -0.86
UPF3B-204ENST00000619445 C19orf12Q9NSK7 152 aa9.71□□□□□ -0.86
UPF3B-204ENST00000619445 PITPNC1Q9UKF7 332 aa9.71□□□□□ -0.86
UPF3B-204ENST00000619445 OR52A1Q9UKL2 312 aa9.71□□□□□ -0.86
UPF3B-204ENST00000619445 POMPQ9Y244 141 aa9.71□□□□□ -0.86
UPF3B-204ENST00000619445 TBL2Q9Y4P3 447 aaKnown RBP9.71□□□□□ -0.86
UPF3B-204ENST00000619445 V9GYS6 101 aa9.71□□□□□ -0.86
UPF3B-204ENST00000619445 CMYA5Q8N3K9 4069 aa9.7□□□□□ -0.86
UPF3B-204ENST00000619445 VGLL3A8MV65 326 aa9.7□□□□□ -0.86
UPF3B-204ENST00000619445 GATBO75879 557 aaKnown RBP9.7□□□□□ -0.86
UPF3B-204ENST00000619445 SERPINA3P01011 423 aa9.7□□□□□ -0.86
UPF3B-204ENST00000619445 TK1P04183 234 aa9.7□□□□□ -0.86
UPF3B-204ENST00000619445 RASSF2P50749 326 aa9.7□□□□□ -0.86
UPF3B-204ENST00000619445 EFNB2P52799 333 aa9.7□□□□□ -0.86
UPF3B-204ENST00000619445 SLX4IPQ5VYV7 408 aa9.7□□□□□ -0.86
UPF3B-204ENST00000619445 TMEM200BQ69YZ2 307 aa9.7□□□□□ -0.86
UPF3B-204ENST00000619445 HCP5Q6MZN7 132 aa9.7□□□□□ -0.86
UPF3B-204ENST00000619445 ZDHHC13Q8IUH4 622 aa9.7□□□□□ -0.86
UPF3B-204ENST00000619445 MKXQ8IYA7 352 aa9.7□□□□□ -0.86
UPF3B-204ENST00000619445 Q8IYB0 196 aa9.7□□□□□ -0.86
UPF3B-204ENST00000619445 OR13D1Q8NGV5 346 aa9.7□□□□□ -0.86
UPF3B-204ENST00000619445 TMEM163Q8TC26 289 aa9.7□□□□□ -0.86
UPF3B-204ENST00000619445 ELL3Q9HB65 397 aaPredicted RBP9.7□□□□□ -0.86
UPF3B-204ENST00000619445 HES4Q9HCC6 221 aa9.7□□□□□ -0.86
UPF3B-204ENST00000619445 WARS2Q9UGM6 360 aaKnown RBP9.7□□□□□ -0.86
UPF3B-204ENST00000619445 COPS3Q9UNS2 423 aa9.7□□□□□ -0.86
UPF3B-204ENST00000619445 DSCAML1Q8TD84 2053 aa9.7□□□□□ -0.86
UPF3B-204ENST00000619445 NOTCH3Q9UM47 2321 aa9.7□□□□□ -0.86
UPF3B-204ENST00000619445 ZAR1LA6NP61 321 aa9.69□□□□□ -0.86
Retrieved 100 of 20,778 RNA–protein pairs in 31.9 ms