RNA–Protein interactions for RNA: ENST00000619079.1

UPF3A-212, Transcript of UPF3A, regulator of nonsense mediated mRNA decay, humanhuman

TSL 2

Gene UPF3A, Length 2,423 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3A-212ENST00000619079 PLAC9Q5JTB6 97 aa9.54□□□□□ -0.88
UPF3A-212ENST00000619079 FIGLAQ6QHK4 219 aa9.54□□□□□ -0.88
UPF3A-212ENST00000619079 PRSS41Q7RTY9 318 aa9.54□□□□□ -0.88
UPF3A-212ENST00000619079 HIST2H2ABQ8IUE6 130 aaPredicted RBP9.54□□□□□ -0.88
UPF3A-212ENST00000619079 SULF2Q8IWU5 870 aa9.54□□□□□ -0.88
UPF3A-212ENST00000619079 STT3BQ8TCJ2 826 aa9.54□□□□□ -0.88
UPF3A-212ENST00000619079 FRZBQ92765 325 aa9.54□□□□□ -0.88
UPF3A-212ENST00000619079 NICN1Q9BSH3 213 aa9.54□□□□□ -0.88
UPF3A-212ENST00000619079 TMEM59Q9BXS4 323 aa9.54□□□□□ -0.88
UPF3A-212ENST00000619079 MRPS2Q9Y399 296 aaKnown RBP9.54□□□□□ -0.88
UPF3A-212ENST00000619079 R4GN57 208 aa9.54□□□□□ -0.88
UPF3A-212ENST00000619079 KIF26BQ2KJY2 2108 aa9.54□□□□□ -0.88
UPF3A-212ENST00000619079 TRAV36DV7A0A075B6V5 113 aa9.53□□□□□ -0.88
UPF3A-212ENST00000619079 H0YGG7 62 aa9.53□□□□□ -0.88
UPF3A-212ENST00000619079 LMX1BO60663 402 aa9.53□□□□□ -0.88
UPF3A-212ENST00000619079 MPIG6BO95866 241 aa9.53□□□□□ -0.88
UPF3A-212ENST00000619079 MBP02144 154 aa9.53□□□□□ -0.88
UPF3A-212ENST00000619079 SRP19P09132 144 aaKnown RBP9.53□□□□□ -0.88
UPF3A-212ENST00000619079 OR5AC1P0C628 307 aa9.53□□□□□ -0.88
UPF3A-212ENST00000619079 CT45A8P0DMV1 189 aa9.53□□□□□ -0.88
UPF3A-212ENST00000619079 CT45A9P0DMV2 189 aa9.53□□□□□ -0.88
UPF3A-212ENST00000619079 OR5H8P0DN80 308 aa9.53□□□□□ -0.88
UPF3A-212ENST00000619079 GZMBP10144 247 aa9.53□□□□□ -0.88
UPF3A-212ENST00000619079 CTLA4P16410 223 aa9.53□□□□□ -0.88
UPF3A-212ENST00000619079 GABRA4P48169 554 aa9.53□□□□□ -0.88
UPF3A-212ENST00000619079 ARF3P61204 181 aaPredicted RBP9.53□□□□□ -0.88
UPF3A-212ENST00000619079 ARL6IP1Q15041 203 aa9.53□□□□□ -0.88
UPF3A-212ENST00000619079 SGCBQ16585 318 aa9.53□□□□□ -0.88
UPF3A-212ENST00000619079 LPAL2Q16609 132 aa9.53□□□□□ -0.88
UPF3A-212ENST00000619079 PCK2Q16822 640 aa9.53□□□□□ -0.88
UPF3A-212ENST00000619079 CT45A2Q5DJT8 189 aa9.53□□□□□ -0.88
UPF3A-212ENST00000619079 FNDC7Q5VTL7 733 aa9.53□□□□□ -0.88
UPF3A-212ENST00000619079 LCN10Q6JVE6 187 aa9.53□□□□□ -0.88
UPF3A-212ENST00000619079 DNM1P34Q6PK57 102 aa9.53□□□□□ -0.88
UPF3A-212ENST00000619079 TMEM182Q6ZP80 229 aaPredicted RBP9.53□□□□□ -0.88
UPF3A-212ENST00000619079 ABHD5Q8WTS1 349 aa9.53□□□□□ -0.88
UPF3A-212ENST00000619079 FOXN4Q96NZ1 517 aa9.53□□□□□ -0.88
UPF3A-212ENST00000619079 RARRES2Q99969 163 aa9.53□□□□□ -0.88
UPF3A-212ENST00000619079 TXNIPQ9H3M7 391 aa9.53□□□□□ -0.88
UPF3A-212ENST00000619079 EXOSC5Q9NQT4 235 aaKnown RBP eCLIP9.53□□□□□ -0.88
UPF3A-212ENST00000619079 MRPS28Q9Y2Q9 187 aaKnown RBP9.53□□□□□ -0.88
UPF3A-212ENST00000619079 FAM230AA0A1W2PPH8 454 aa9.53□□□□□ -0.88
UPF3A-212ENST00000619079 A0A1W2PQU0 124 aa9.53□□□□□ -0.88
UPF3A-212ENST00000619079 C11orf98E9PRG8 122 aa9.53□□□□□ -0.88
UPF3A-212ENST00000619079 SCDO00767 359 aa9.53□□□□□ -0.88
UPF3A-212ENST00000619079 CDC14BO60729 498 aa9.53□□□□□ -0.88
UPF3A-212ENST00000619079 IGLV3-19P01714 112 aa9.53□□□□□ -0.88
UPF3A-212ENST00000619079 BGLAPP02818 100 aa9.53□□□□□ -0.88
UPF3A-212ENST00000619079 CTSDP07339 412 aaPredicted RBP9.53□□□□□ -0.88
UPF3A-212ENST00000619079 QDPRP09417 244 aa9.53□□□□□ -0.88
UPF3A-212ENST00000619079 GABRR1P24046 479 aa9.53□□□□□ -0.88
UPF3A-212ENST00000619079 SLC6A8P48029 635 aa9.53□□□□□ -0.88
UPF3A-212ENST00000619079 SNU13P55769 128 aaKnown RBP9.53□□□□□ -0.88
UPF3A-212ENST00000619079 PNRC1Q12796 327 aaPredicted RBP9.53□□□□□ -0.88
UPF3A-212ENST00000619079 ZNF266Q14584 549 aa9.53□□□□□ -0.88
UPF3A-212ENST00000619079 CHRFAM7AQ494W8 412 aa9.53□□□□□ -0.88
UPF3A-212ENST00000619079 RTL6Q6ICC9 239 aa9.53□□□□□ -0.88
UPF3A-212ENST00000619079 GLIPR1L1Q6UWM5 242 aa9.53□□□□□ -0.88
UPF3A-212ENST00000619079 JSRP1Q96MG2 331 aaPredicted RBP9.53□□□□□ -0.88
UPF3A-212ENST00000619079 GPR87Q9BY21 358 aa9.53□□□□□ -0.88
UPF3A-212ENST00000619079 SH3BGRL3Q9H299 93 aa9.53□□□□□ -0.88
UPF3A-212ENST00000619079 WFDC1Q9HC57 220 aa9.53□□□□□ -0.88
UPF3A-212ENST00000619079 NSG1A0A0A6YYJ2 146 aa9.52□□□□□ -0.89
UPF3A-212ENST00000619079 H0YL77 283 aa9.52□□□□□ -0.89
UPF3A-212ENST00000619079 SOCS1O15524 211 aa9.52□□□□□ -0.89
UPF3A-212ENST00000619079 NSA2O95478 260 aaKnown RBP9.52□□□□□ -0.89
UPF3A-212ENST00000619079 MBPP02686 304 aaPredicted RBP9.52□□□□□ -0.89
UPF3A-212ENST00000619079 SNRPCP09234 159 aaKnown RBP9.52□□□□□ -0.89
UPF3A-212ENST00000619079 H2BFMP0C1H6 154 aa9.52□□□□□ -0.89
UPF3A-212ENST00000619079 RND2P52198 227 aa9.52□□□□□ -0.89
UPF3A-212ENST00000619079 RND3P61587 244 aa9.52□□□□□ -0.89
UPF3A-212ENST00000619079 RPS21P63220 83 aaKnown RBP9.52□□□□□ -0.89
UPF3A-212ENST00000619079 HLA-DRB3P79483 266 aa9.52□□□□□ -0.89
UPF3A-212ENST00000619079 FOXK1P85037 733 aa9.52□□□□□ -0.89
UPF3A-212ENST00000619079 SGCGQ13326 291 aa9.52□□□□□ -0.89
UPF3A-212ENST00000619079 OTPQ5XKR4 325 aa9.52□□□□□ -0.89
UPF3A-212ENST00000619079 ZNF664Q8N3J9 261 aa9.52□□□□□ -0.89
UPF3A-212ENST00000619079 GATSQ8NAP1 163 aa9.52□□□□□ -0.89
UPF3A-212ENST00000619079 PRSS33Q8NF86 280 aa9.52□□□□□ -0.89
UPF3A-212ENST00000619079 OR10G4Q8NGN3 311 aa9.52□□□□□ -0.89
UPF3A-212ENST00000619079 FLVCR1-AS1Q8TAF5 88 aa9.52□□□□□ -0.89
UPF3A-212ENST00000619079 RBMXL1Q96E39 390 aaKnown RBP9.52□□□□□ -0.89
UPF3A-212ENST00000619079 OR14J1Q9UGF5 321 aa9.52□□□□□ -0.89
UPF3A-212ENST00000619079 FOXD3Q9UJU5 478 aaPredicted RBP9.52□□□□□ -0.89
UPF3A-212ENST00000619079 WSB1Q9Y6I7 421 aa9.52□□□□□ -0.89
UPF3A-212ENST00000619079 ZNF318Q5VUA4 2279 aa9.52□□□□□ -0.89
UPF3A-212ENST00000619079 SDK1Q7Z5N4 2213 aa9.52□□□□□ -0.89
UPF3A-212ENST00000619079 HEATR5AQ86XA9 2040 aa9.52□□□□□ -0.89
UPF3A-212ENST00000619079 SCN2AQ99250 2005 aa9.52□□□□□ -0.89
UPF3A-212ENST00000619079 A0A0A6YYD4 124 aa9.52□□□□□ -0.89
UPF3A-212ENST00000619079 CRYM-AS1A6NIL9 109 aa9.52□□□□□ -0.89
UPF3A-212ENST00000619079 MARCH11A6NNE9 402 aa9.52□□□□□ -0.89
UPF3A-212ENST00000619079 CLDN34H7C241 214 aa9.52□□□□□ -0.89
UPF3A-212ENST00000619079 SLC31A1O15431 190 aa9.52□□□□□ -0.89
UPF3A-212ENST00000619079 IGHMP01871 453 aa9.52□□□□□ -0.89
UPF3A-212ENST00000619079 FOLR1P15328 257 aa9.52□□□□□ -0.89
UPF3A-212ENST00000619079 ZNF20P17024 532 aa9.52□□□□□ -0.89
UPF3A-212ENST00000619079 NNATQ16517 81 aa9.52□□□□□ -0.89
UPF3A-212ENST00000619079 ZNF506Q5JVG8 444 aa9.52□□□□□ -0.89
UPF3A-212ENST00000619079 KLHL24Q6TFL4 600 aa9.52□□□□□ -0.89
Retrieved 100 of 20,778 RNA–protein pairs in 51.3 ms