RNA–Protein interactions for RNA: ENST00000597618.5

TRIM28-210, Transcript of tripartite motif containing 28, humanhuman

TSL 2

Gene TRIM28, Length 609 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-210ENST00000597618 KCTD18Q6PI47 426 aaPredicted RBP8.07□□□□□ -1.12
TRIM28-210ENST00000597618 HAGHLQ6PII5 290 aaPredicted RBP8.07□□□□□ -1.12
TRIM28-210ENST00000597618 C10orf99Q6UWK7 81 aa8.07□□□□□ -1.12
TRIM28-210ENST00000597618 OSR2Q8N2R0 312 aa8.07□□□□□ -1.12
TRIM28-210ENST00000597618 POC1AQ8NBT0 407 aa8.07□□□□□ -1.12
TRIM28-210ENST00000597618 SLC37A3Q8NCC5 494 aa8.07□□□□□ -1.12
TRIM28-210ENST00000597618 FAM81AQ8TBF8 368 aa8.07□□□□□ -1.12
TRIM28-210ENST00000597618 RCN3Q96D15 328 aa8.07□□□□□ -1.12
TRIM28-210ENST00000597618 LYZL4Q96KX0 146 aa8.07□□□□□ -1.12
TRIM28-210ENST00000597618 ABHD6Q9BV23 337 aa8.07□□□□□ -1.12
TRIM28-210ENST00000597618 VIPAS39Q9H9C1 493 aa8.07□□□□□ -1.12
TRIM28-210ENST00000597618 PALMDQ9NP74 551 aa8.07□□□□□ -1.12
TRIM28-210ENST00000597618 INTS9Q9NV88 658 aaKnown RBP8.07□□□□□ -1.12
TRIM28-210ENST00000597618 CDH10Q9Y6N8 788 aa8.07□□□□□ -1.12
TRIM28-210ENST00000597618 STARD9Q9P2P6 4700 aa8.06□□□□□ -1.12
TRIM28-210ENST00000597618 PSMB11A5LHX3 300 aa8.06□□□□□ -1.12
TRIM28-210ENST00000597618 NME4O00746 187 aa8.06□□□□□ -1.12
TRIM28-210ENST00000597618 SLC22A2O15244 555 aa8.06□□□□□ -1.12
TRIM28-210ENST00000597618 GYPBP06028 91 aa8.06□□□□□ -1.12
TRIM28-210ENST00000597618 H2BFMP0C1H6 154 aa8.06□□□□□ -1.12
TRIM28-210ENST00000597618 NCK1P16333 377 aa8.06□□□□□ -1.12
TRIM28-210ENST00000597618 SPI1P17947 270 aa8.06□□□□□ -1.12
TRIM28-210ENST00000597618 MYCNOSP40205 109 aa8.06□□□□□ -1.12
TRIM28-210ENST00000597618 ARHGDIBP52566 201 aa8.06□□□□□ -1.12
TRIM28-210ENST00000597618 ACTA2P62736 377 aa8.06□□□□□ -1.12
TRIM28-210ENST00000597618 ACTG2P63267 376 aa8.06□□□□□ -1.12
TRIM28-210ENST00000597618 ACTC1P68032 377 aa8.06□□□□□ -1.12
TRIM28-210ENST00000597618 ACTA1P68133 377 aa8.06□□□□□ -1.12
TRIM28-210ENST00000597618 CEP78Q5JTW2 689 aa8.06□□□□□ -1.12
TRIM28-210ENST00000597618 ZBTB49Q6ZSB9 765 aa8.06□□□□□ -1.12
TRIM28-210ENST00000597618 KRT74Q7RTS7 529 aa8.06□□□□□ -1.12
TRIM28-210ENST00000597618 OR2W3Q7Z3T1 314 aa8.06□□□□□ -1.12
TRIM28-210ENST00000597618 OR5A2Q8NGI9 324 aa8.06□□□□□ -1.12
TRIM28-210ENST00000597618 OR6N2Q8NGY6 317 aa8.06□□□□□ -1.12
TRIM28-210ENST00000597618 GNPDA2Q8TDQ7 276 aa8.06□□□□□ -1.12
TRIM28-210ENST00000597618 ASCL2Q99929 193 aa8.06□□□□□ -1.12
TRIM28-210ENST00000597618 KCTD14Q9BQ13 255 aaPredicted RBP8.06□□□□□ -1.12
TRIM28-210ENST00000597618 SLC25A33Q9BSK2 321 aa8.06□□□□□ -1.12
TRIM28-210ENST00000597618 NMNAT2Q9BZQ4 307 aa8.06□□□□□ -1.12
TRIM28-210ENST00000597618 EGLN3Q9H6Z9 239 aa8.06□□□□□ -1.12
TRIM28-210ENST00000597618 SAR1AQ9NR31 198 aa8.06□□□□□ -1.12
TRIM28-210ENST00000597618 TBC1D23Q9NUY8 699 aa8.06□□□□□ -1.12
TRIM28-210ENST00000597618 SAMD4AQ9UPU9 718 aaKnown RBP8.06□□□□□ -1.12
TRIM28-210ENST00000597618 IGHV2-26A0A0B4J1V2 119 aa8.05□□□□□ -1.12
TRIM28-210ENST00000597618 NUDT19A8MXV4 375 aa8.05□□□□□ -1.12
TRIM28-210ENST00000597618 M0QZK8 103 aa8.05□□□□□ -1.12
TRIM28-210ENST00000597618 NDUFAB1O14561 156 aa8.05□□□□□ -1.12
TRIM28-210ENST00000597618 OR2F2O95006 317 aa8.05□□□□□ -1.12
TRIM28-210ENST00000597618 NXPH2O95156 264 aa8.05□□□□□ -1.12
TRIM28-210ENST00000597618 CHATP28329 748 aa8.05□□□□□ -1.12
TRIM28-210ENST00000597618 BRS3P32247 399 aa8.05□□□□□ -1.12
TRIM28-210ENST00000597618 CRMP1Q14194 572 aa8.05□□□□□ -1.12
TRIM28-210ENST00000597618 PLBD1Q6P4A8 553 aa8.05□□□□□ -1.12
TRIM28-210ENST00000597618 C8orf86Q6ZUL3 223 aa8.05□□□□□ -1.12
TRIM28-210ENST00000597618 HIST2H2ABQ8IUE6 130 aaPredicted RBP8.05□□□□□ -1.12
TRIM28-210ENST00000597618 ERI1Q8IV48 349 aaKnown RBP8.05□□□□□ -1.12
TRIM28-210ENST00000597618 ITFG2Q969R8 447 aa8.05□□□□□ -1.12
TRIM28-210ENST00000597618 ATP6V1G3Q96LB4 118 aa8.05□□□□□ -1.12
TRIM28-210ENST00000597618 ZNF714Q96N38 554 aa8.05□□□□□ -1.12
TRIM28-210ENST00000597618 OR8B4Q96RC9 309 aa8.05□□□□□ -1.12
TRIM28-210ENST00000597618 PRR25Q96S07 402 aa8.05□□□□□ -1.12
TRIM28-210ENST00000597618 INTS14Q96SY0 518 aa8.05□□□□□ -1.12
TRIM28-210ENST00000597618 P2RX4Q99571 388 aa8.05□□□□□ -1.12
TRIM28-210ENST00000597618 HOPXQ9BPY8 73 aaPredicted RBP8.05□□□□□ -1.12
TRIM28-210ENST00000597618 GAR1Q9NY12 217 aaKnown RBP8.05□□□□□ -1.12
TRIM28-210ENST00000597618 VNN3Q9NY84 501 aa8.05□□□□□ -1.12
TRIM28-210ENST00000597618 POLDIP2Q9Y2S7 368 aa8.05□□□□□ -1.12
TRIM28-210ENST00000597618 SESN1Q9Y6P5 492 aa8.05□□□□□ -1.12
TRIM28-210ENST00000597618 J3QT63 122 aa8.04□□□□□ -1.12
TRIM28-210ENST00000597618 K7N7A8 449 aa8.04□□□□□ -1.12
TRIM28-210ENST00000597618 NOS1APO75052 506 aaPredicted RBP8.04□□□□□ -1.12
TRIM28-210ENST00000597618 CLUP10909 449 aa8.04□□□□□ -1.12
TRIM28-210ENST00000597618 HTR1DP28221 377 aa8.04□□□□□ -1.12
TRIM28-210ENST00000597618 MAP2K3P46734 347 aa8.04□□□□□ -1.12
TRIM28-210ENST00000597618 NUDT2P50583 147 aa8.04□□□□□ -1.12
TRIM28-210ENST00000597618 LUMP51884 338 aaPredicted RBP8.04□□□□□ -1.12
TRIM28-210ENST00000597618 EDDM3BP56851 147 aa8.04□□□□□ -1.12
TRIM28-210ENST00000597618 PSMA6P60900 246 aaKnown RBP8.04□□□□□ -1.12
TRIM28-210ENST00000597618 MEF2CQ06413 473 aaPredicted RBP8.04□□□□□ -1.12
TRIM28-210ENST00000597618 C9orf152Q5JTZ5 239 aa8.04□□□□□ -1.12
TRIM28-210ENST00000597618 LINC01590Q5TEZ4 76 aa8.04□□□□□ -1.12
TRIM28-210ENST00000597618 PLCXD3Q63HM9 321 aa8.04□□□□□ -1.12
TRIM28-210ENST00000597618 GDPD3Q7L5L3 318 aa8.04□□□□□ -1.12
TRIM28-210ENST00000597618 SHFQ7M4L6 423 aa8.04□□□□□ -1.12
TRIM28-210ENST00000597618 LINC00471Q8N535 108 aa8.04□□□□□ -1.12
TRIM28-210ENST00000597618 ZNF676Q8N7Q3 588 aa8.04□□□□□ -1.12
TRIM28-210ENST00000597618 ASCC1Q8N9N2 400 aaKnown RBP8.04□□□□□ -1.12
TRIM28-210ENST00000597618 KLHL30-AS1Q8NEE0 82 aa8.04□□□□□ -1.12
TRIM28-210ENST00000597618 OR8B12Q8NGG6 310 aa8.04□□□□□ -1.12
TRIM28-210ENST00000597618 RP9Q8TA86 221 aaKnown RBP8.04□□□□□ -1.12
TRIM28-210ENST00000597618 BCAS4Q8TDM0 211 aa8.04□□□□□ -1.12
TRIM28-210ENST00000597618 STMN2Q93045 179 aa8.04□□□□□ -1.12
TRIM28-210ENST00000597618 ZNF488Q96MN9 340 aa8.04□□□□□ -1.12
TRIM28-210ENST00000597618 RBM14Q96PK6 669 aaKnown RBP8.04□□□□□ -1.12
TRIM28-210ENST00000597618 RCHY1Q96PM5 261 aa8.04□□□□□ -1.12
TRIM28-210ENST00000597618 AMELYQ99218 206 aa8.04□□□□□ -1.12
TRIM28-210ENST00000597618 NRIP2Q9BQI9 281 aa8.04□□□□□ -1.12
TRIM28-210ENST00000597618 CLEC7AQ9BXN2 247 aa8.04□□□□□ -1.12
TRIM28-210ENST00000597618 ZFP57Q9NU63 452 aa8.04□□□□□ -1.12
TRIM28-210ENST00000597618 DCAF13Q9NV06 445 aaKnown RBP8.04□□□□□ -1.12
Retrieved 100 of 20,778 RNA–protein pairs in 63.6 ms