RNA–Protein interactions for RNA: ENST00000588713.1

LIG3-211, Transcript of DNA ligase 3, humanhuman

TSL 2

Gene LIG3, Length 467 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-211ENST00000588713 CDRT4Q8N9R6 151 aa3.63□□□□□ -1.83
LIG3-211ENST00000588713 CYB561A3Q8NBI2 242 aa3.63□□□□□ -1.83
LIG3-211ENST00000588713 MFSD9Q8NBP5 474 aa3.63□□□□□ -1.83
LIG3-211ENST00000588713 SEMA6DQ8NFY4 1073 aa3.63□□□□□ -1.83
LIG3-211ENST00000588713 OR7G2Q8NG99 324 aa3.63□□□□□ -1.83
LIG3-211ENST00000588713 OR2L8Q8NGY9 312 aa3.63□□□□□ -1.83
LIG3-211ENST00000588713 OIT3Q8WWZ8 545 aa3.63□□□□□ -1.83
LIG3-211ENST00000588713 DCUN1D4Q92564 292 aa3.63□□□□□ -1.83
LIG3-211ENST00000588713 GTF3AQ92664 365 aaKnown RBP3.63□□□□□ -1.83
LIG3-211ENST00000588713 HOXB13Q92826 284 aaPredicted RBP3.63□□□□□ -1.83
LIG3-211ENST00000588713 MCHR2Q969V1 340 aa3.63□□□□□ -1.83
LIG3-211ENST00000588713 CPNE4Q96A23 557 aaPredicted RBP3.63□□□□□ -1.83
LIG3-211ENST00000588713 MRPL24Q96A35 216 aaKnown RBP3.63□□□□□ -1.83
LIG3-211ENST00000588713 ZBTB8AQ96BR9 441 aa3.63□□□□□ -1.83
LIG3-211ENST00000588713 SLC35A4Q96G79 324 aa3.63□□□□□ -1.83
LIG3-211ENST00000588713 COX14Q96I36 57 aa3.63□□□□□ -1.83
LIG3-211ENST00000588713 C4orf45Q96LM5 186 aa3.63□□□□□ -1.83
LIG3-211ENST00000588713 TNFRSF13CQ96RJ3 184 aa3.63□□□□□ -1.83
LIG3-211ENST00000588713 SDF2Q99470 211 aa3.63□□□□□ -1.83
LIG3-211ENST00000588713 GAL3ST1Q99999 423 aa3.63□□□□□ -1.83
LIG3-211ENST00000588713 BCL2L14Q9BZR8 327 aa3.63□□□□□ -1.83
LIG3-211ENST00000588713 AICDAQ9GZX7 198 aa3.63□□□□□ -1.83
LIG3-211ENST00000588713 DEFB127Q9H1M4 99 aa3.63□□□□□ -1.83
LIG3-211ENST00000588713 OR2AG1Q9H205 316 aa3.63□□□□□ -1.83
LIG3-211ENST00000588713 SYT4Q9H2B2 425 aa3.63□□□□□ -1.83
LIG3-211ENST00000588713 XKR8Q9H6D3 395 aa3.63□□□□□ -1.83
LIG3-211ENST00000588713 SYNPO2LQ9H987 977 aa3.63□□□□□ -1.83
LIG3-211ENST00000588713 RHOFQ9HBH0 211 aa3.63□□□□□ -1.83
LIG3-211ENST00000588713 CHMP1AQ9HD42 196 aaPredicted RBP3.63□□□□□ -1.83
LIG3-211ENST00000588713 RAB18Q9NP72 206 aa3.63□□□□□ -1.83
LIG3-211ENST00000588713 MRPS30Q9NP92 439 aaKnown RBP3.63□□□□□ -1.83
LIG3-211ENST00000588713 PRDM7Q9NQW5 492 aa3.63□□□□□ -1.83
LIG3-211ENST00000588713 SDHAF3Q9NRP4 125 aa3.63□□□□□ -1.83
LIG3-211ENST00000588713 CYTL1Q9NRR1 136 aa3.63□□□□□ -1.83
LIG3-211ENST00000588713 UFSP2Q9NUQ7 469 aa3.63□□□□□ -1.83
LIG3-211ENST00000588713 ZNF701Q9NV72 531 aaPredicted RBP3.63□□□□□ -1.83
LIG3-211ENST00000588713 MED29Q9NX70 200 aa3.63□□□□□ -1.83
LIG3-211ENST00000588713 DNAJB11Q9UBS4 358 aa3.63□□□□□ -1.83
LIG3-211ENST00000588713 CACFD1Q9UGQ2 172 aa3.63□□□□□ -1.83
LIG3-211ENST00000588713 KCNE5Q9UJ90 142 aa3.63□□□□□ -1.83
LIG3-211ENST00000588713 FOXD3Q9UJU5 478 aaPredicted RBP3.63□□□□□ -1.83
LIG3-211ENST00000588713 PLAGL1Q9UM63 463 aa3.63□□□□□ -1.83
LIG3-211ENST00000588713 VSIG4Q9Y279 399 aa3.63□□□□□ -1.83
LIG3-211ENST00000588713 ATG4BQ9Y4P1 393 aa3.63□□□□□ -1.83
LIG3-211ENST00000588713 TIMM10BQ9Y5J6 103 aa3.63□□□□□ -1.83
LIG3-211ENST00000588713 TMEM14AQ9Y6G1 99 aa3.63□□□□□ -1.83
LIG3-211ENST00000588713 UBR4Q5T4S7 5183 aa3.63□□□□□ -1.83
LIG3-211ENST00000588713 CMYA5Q8N3K9 4069 aa3.63□□□□□ -1.83
LIG3-211ENST00000588713 MPDZO75970 2070 aa3.63□□□□□ -1.83
LIG3-211ENST00000588713 HEATR5BQ9P2D3 2071 aa3.63□□□□□ -1.83
LIG3-211ENST00000588713 TRAV8-7A0A075B6U6 113 aa3.62□□□□□ -1.83
LIG3-211ENST00000588713 TRAV18A0A075B6X5 111 aa3.62□□□□□ -1.83
LIG3-211ENST00000588713 IGHV4-30-2A0A087WSY4 118 aa3.62□□□□□ -1.83
LIG3-211ENST00000588713 IGKV1-8A0A0C4DH67 115 aa3.62□□□□□ -1.83
LIG3-211ENST00000588713 A0A1B0GWA3 101 aa3.62□□□□□ -1.83
LIG3-211ENST00000588713 LOC390937A0A1W2PQ73 354 aa3.62□□□□□ -1.83
LIG3-211ENST00000588713 A6NLC8 198 aa3.62□□□□□ -1.83
LIG3-211ENST00000588713 CEACAM18A8MTB9 384 aa3.62□□□□□ -1.83
LIG3-211ENST00000588713 PRR32B1ATL7 298 aa3.62□□□□□ -1.83
LIG3-211ENST00000588713 RNASEK-C17orf49H0YIS7 233 aa3.62□□□□□ -1.83
LIG3-211ENST00000588713 RPL36A-HNRNPH2H7BZ11 118 aa3.62□□□□□ -1.83
LIG3-211ENST00000588713 CCSO14618 274 aa3.62□□□□□ -1.83
LIG3-211ENST00000588713 LDLRAD4O15165 306 aa3.62□□□□□ -1.83
LIG3-211ENST00000588713 FCMRO60667 390 aa3.62□□□□□ -1.83
LIG3-211ENST00000588713 NDUFS6O75380 124 aaKnown RBP3.62□□□□□ -1.83
LIG3-211ENST00000588713 TXNDC12O95881 172 aa3.62□□□□□ -1.83
LIG3-211ENST00000588713 ONECUT2O95948 504 aa3.62□□□□□ -1.83
LIG3-211ENST00000588713 PLGP00747 810 aaPredicted RBP3.62□□□□□ -1.83
LIG3-211ENST00000588713 IFNA17P01571 189 aa3.62□□□□□ -1.83
LIG3-211ENST00000588713 CTSBP07858 339 aa3.62□□□□□ -1.83
LIG3-211ENST00000588713 OR8G3PP0DMU2 310 aa3.62□□□□□ -1.83
LIG3-211ENST00000588713 CD37P11049 281 aa3.62□□□□□ -1.83
LIG3-211ENST00000588713 PTHLHP12272 177 aa3.62□□□□□ -1.83
LIG3-211ENST00000588713 PGAM2P15259 253 aa3.62□□□□□ -1.83
LIG3-211ENST00000588713 ZNF44P15621 663 aa3.62□□□□□ -1.83
LIG3-211ENST00000588713 PAX1P15863 534 aa3.62□□□□□ -1.83
LIG3-211ENST00000588713 ST6GAL1P15907 406 aa3.62□□□□□ -1.83
LIG3-211ENST00000588713 RAB5AP20339 215 aa3.62□□□□□ -1.83
LIG3-211ENST00000588713 PTNP21246 168 aa3.62□□□□□ -1.83
LIG3-211ENST00000588713 ZNF10P21506 573 aaPredicted RBP3.62□□□□□ -1.83
LIG3-211ENST00000588713 NFYBP25208 207 aa3.62□□□□□ -1.83
LIG3-211ENST00000588713 HTR5AP47898 357 aa3.62□□□□□ -1.83
LIG3-211ENST00000588713 ARHGDIBP52566 201 aa3.62□□□□□ -1.83
LIG3-211ENST00000588713 PRPS1P60891 318 aa3.62□□□□□ -1.83
LIG3-211ENST00000588713 HGFACQ04756 655 aa3.62□□□□□ -1.83
LIG3-211ENST00000588713 PRDX1Q06830 199 aaKnown RBP3.62□□□□□ -1.83
LIG3-211ENST00000588713 ATXN7L3Q14CW9 347 aaPredicted RBP3.62□□□□□ -1.83
LIG3-211ENST00000588713 ZNF750Q32MQ0 723 aa3.62□□□□□ -1.83
LIG3-211ENST00000588713 LRRC37A5PQ49AS3 106 aa3.62□□□□□ -1.83
LIG3-211ENST00000588713 ALG10BQ5I7T1 473 aa3.62□□□□□ -1.83
LIG3-211ENST00000588713 C1orf185Q5T7R7 199 aa3.62□□□□□ -1.83
LIG3-211ENST00000588713 TMEM268Q5VZI3 342 aa3.62□□□□□ -1.83
LIG3-211ENST00000588713 NSUN5P2Q63ZY6 315 aa3.62□□□□□ -1.83
LIG3-211ENST00000588713 FIGLAQ6QHK4 219 aa3.62□□□□□ -1.83
LIG3-211ENST00000588713 OPN5Q6U736 354 aa3.62□□□□□ -1.83
LIG3-211ENST00000588713 BTNL8Q6UX41 500 aa3.62□□□□□ -1.83
LIG3-211ENST00000588713 NUP54Q7Z3B4 507 aa3.62□□□□□ -1.83
LIG3-211ENST00000588713 ZNF676Q8N7Q3 588 aa3.62□□□□□ -1.83
LIG3-211ENST00000588713 COX18Q8N8Q8 333 aa3.62□□□□□ -1.83
LIG3-211ENST00000588713 PNLDC1Q8NA58 520 aaKnown RBP3.62□□□□□ -1.83
Retrieved 100 of 20,778 RNA–protein pairs in 40.6 ms