RNA–Protein interactions for RNA: ENST00000582653.1

SHMT1-209, Transcript of serine hydroxymethyltransferase 1, humanhuman

TSL 3

Gene SHMT1, Length 879 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT1-209ENST00000582653 ZNF222Q9UK12 451 aa16.77■□□□□ 0.28
SHMT1-209ENST00000582653 SLC22A13Q9Y226 551 aa16.77■□□□□ 0.28
SHMT1-209ENST00000582653 A0A1W2PQ09 198 aa16.76■□□□□ 0.27
SHMT1-209ENST00000582653 TIMM23O14925 209 aa16.76■□□□□ 0.27
SHMT1-209ENST00000582653 NPFFO15130 113 aa16.76■□□□□ 0.27
SHMT1-209ENST00000582653 SYNGR1O43759 233 aa16.76■□□□□ 0.27
SHMT1-209ENST00000582653 MTRF1O75570 445 aaKnown RBP16.76■□□□□ 0.27
SHMT1-209ENST00000582653 RPP14O95059 124 aaKnown RBP16.76■□□□□ 0.27
SHMT1-209ENST00000582653 APOL3O95236 402 aa16.76■□□□□ 0.27
SHMT1-209ENST00000582653 RASSF2P50749 326 aa16.76■□□□□ 0.27
SHMT1-209ENST00000582653 CAV3P56539 151 aa16.76■□□□□ 0.27
SHMT1-209ENST00000582653 PDLIM3Q53GG5 364 aaPredicted RBP16.76■□□□□ 0.27
SHMT1-209ENST00000582653 ZNF684Q5T5D7 378 aa16.76■□□□□ 0.27
SHMT1-209ENST00000582653 BATF2Q8N1L9 274 aa16.76■□□□□ 0.27
SHMT1-209ENST00000582653 TMEM185AQ8NFB2 350 aa16.76■□□□□ 0.27
SHMT1-209ENST00000582653 OR14K1Q8NGZ2 314 aa16.76■□□□□ 0.27
SHMT1-209ENST00000582653 MNTQ99583 582 aa16.76■□□□□ 0.27
SHMT1-209ENST00000582653 V9GYS6 101 aa16.76■□□□□ 0.27
SHMT1-209ENST00000582653 H3BSH0 61 aa16.75■□□□□ 0.27
SHMT1-209ENST00000582653 M0QZ24 198 aa16.75■□□□□ 0.27
SHMT1-209ENST00000582653 HAAOP46952 286 aa16.75■□□□□ 0.27
SHMT1-209ENST00000582653 PROK1P58294 105 aa16.75■□□□□ 0.27
SHMT1-209ENST00000582653 ACTR3P61158 418 aa16.75■□□□□ 0.27
SHMT1-209ENST00000582653 EGR3Q06889 387 aa16.75■□□□□ 0.27
SHMT1-209ENST00000582653 TAF9Q16594 264 aa16.75■□□□□ 0.27
SHMT1-209ENST00000582653 ODF4Q2M2E3 257 aa16.75■□□□□ 0.27
SHMT1-209ENST00000582653 CLVS2Q5SYC1 327 aa16.75■□□□□ 0.27
SHMT1-209ENST00000582653 ACP7Q6ZNF0 438 aa16.75■□□□□ 0.27
SHMT1-209ENST00000582653 GID4Q8IVV7 300 aa16.75■□□□□ 0.27
SHMT1-209ENST00000582653 CD177Q8N6Q3 437 aa16.75■□□□□ 0.27
SHMT1-209ENST00000582653 POC1AQ8NBT0 407 aa16.75■□□□□ 0.27
SHMT1-209ENST00000582653 C16orf95Q9H693 158 aa16.75■□□□□ 0.27
SHMT1-209ENST00000582653 MOB1AQ9H8S9 216 aa16.75■□□□□ 0.27
SHMT1-209ENST00000582653 ZNRD1Q9P1U0 126 aa16.75■□□□□ 0.27
SHMT1-209ENST00000582653 SNX5Q9Y5X3 404 aa16.75■□□□□ 0.27
SHMT1-209ENST00000582653 RFPL4AA6NLU0 287 aa16.74■□□□□ 0.27
SHMT1-209ENST00000582653 RFPL4AL1F8VTS6 287 aa16.74■□□□□ 0.27
SHMT1-209ENST00000582653 M0R1W7 72 aa16.74■□□□□ 0.27
SHMT1-209ENST00000582653 ATP5HO75947 161 aa16.74■□□□□ 0.27
SHMT1-209ENST00000582653 CEBPDP49716 269 aaPredicted RBP16.74■□□□□ 0.27
SHMT1-209ENST00000582653 UBE2E1P51965 193 aa16.74■□□□□ 0.27
SHMT1-209ENST00000582653 TMEM42Q69YG0 159 aa16.74■□□□□ 0.27
SHMT1-209ENST00000582653 ASPHD2Q6ICH7 369 aa16.74■□□□□ 0.27
SHMT1-209ENST00000582653 Q6ZSV7 163 aa16.74■□□□□ 0.27
SHMT1-209ENST00000582653 ASRGL1Q7L266 308 aa16.74■□□□□ 0.27
SHMT1-209ENST00000582653 FAM185AQ8N0U4 392 aa16.74■□□□□ 0.27
SHMT1-209ENST00000582653 YIPF7Q8N8F6 280 aa16.74■□□□□ 0.27
SHMT1-209ENST00000582653 SDSLQ96GA7 329 aa16.74■□□□□ 0.27
SHMT1-209ENST00000582653 RIBC2Q9H4K1 309 aa16.74■□□□□ 0.27
SHMT1-209ENST00000582653 RASL12Q9NYN1 266 aa16.74■□□□□ 0.27
SHMT1-209ENST00000582653 OAZ3Q9UMX2 235 aa16.74■□□□□ 0.27
SHMT1-209ENST00000582653 A0A1W2PQL4 384 aaPredicted RBP16.73■□□□□ 0.27
SHMT1-209ENST00000582653 PQLC2LA1A4F0 135 aa16.73■□□□□ 0.27
SHMT1-209ENST00000582653 MEIOCA2RUB1 952 aa16.73■□□□□ 0.27
SHMT1-209ENST00000582653 DLGAP1O14490 977 aa16.73■□□□□ 0.27
SHMT1-209ENST00000582653 TSPAN9O75954 239 aa16.73■□□□□ 0.27
SHMT1-209ENST00000582653 PGA5P0DJD9 388 aa16.73■□□□□ 0.27
SHMT1-209ENST00000582653 TGFBR2P37173 567 aa16.73■□□□□ 0.27
SHMT1-209ENST00000582653 CAPZA1P52907 286 aa16.73■□□□□ 0.27
SHMT1-209ENST00000582653 ZNF573Q86YE8 665 aa16.73■□□□□ 0.27
SHMT1-209ENST00000582653 MMP27Q9H306 513 aa16.73■□□□□ 0.27
SHMT1-209ENST00000582653 METTL8Q9H825 291 aaKnown RBP16.73■□□□□ 0.27
SHMT1-209ENST00000582653 C19orf12Q9NSK7 152 aa16.73■□□□□ 0.27
SHMT1-209ENST00000582653 WARS2Q9UGM6 360 aaKnown RBP16.73■□□□□ 0.27
SHMT1-209ENST00000582653 VPREB3Q9UKI3 123 aa16.73■□□□□ 0.27
SHMT1-209ENST00000582653 BTBD17A6NE02 478 aa16.72■□□□□ 0.27
SHMT1-209ENST00000582653 SAC3D1A6NKF1 404 aa16.72■□□□□ 0.27
SHMT1-209ENST00000582653 H0YAE9 185 aa16.72■□□□□ 0.27
SHMT1-209ENST00000582653 J3QT63 122 aa16.72■□□□□ 0.27
SHMT1-209ENST00000582653 KRT8P05787 483 aa16.72■□□□□ 0.27
SHMT1-209ENST00000582653 FCGR1AP12314 374 aa16.72■□□□□ 0.27
SHMT1-209ENST00000582653 HTR1FP30939 366 aa16.72■□□□□ 0.27
SHMT1-209ENST00000582653 PRDX2P32119 198 aa16.72■□□□□ 0.27
SHMT1-209ENST00000582653 SAA4P35542 130 aa16.72■□□□□ 0.27
SHMT1-209ENST00000582653 ACSM1Q08AH1 577 aa16.72■□□□□ 0.27
SHMT1-209ENST00000582653 BLMHQ13867 455 aa16.72■□□□□ 0.27
SHMT1-209ENST00000582653 MIDNQ504T8 468 aa16.72■□□□□ 0.27
SHMT1-209ENST00000582653 NCR3LG1Q68D85 454 aa16.72■□□□□ 0.27
SHMT1-209ENST00000582653 ANGPTL5Q86XS5 388 aa16.72■□□□□ 0.27
SHMT1-209ENST00000582653 RBM4BQ9BQ04 359 aaKnown RBP16.72■□□□□ 0.27
SHMT1-209ENST00000582653 ENOPH1Q9UHY7 261 aa16.72■□□□□ 0.27
SHMT1-209ENST00000582653 OR2T7P0C7T2 308 aa16.71■□□□□ 0.27
SHMT1-209ENST00000582653 SMIM21Q3B7S5 101 aa16.71■□□□□ 0.27
SHMT1-209ENST00000582653 HCP5Q6MZN7 132 aa16.71■□□□□ 0.27
SHMT1-209ENST00000582653 Q6ZSR3 168 aa16.71■□□□□ 0.27
SHMT1-209ENST00000582653 CATSPERDQ86XM0 798 aa16.71■□□□□ 0.27
SHMT1-209ENST00000582653 CALHM1Q8IU99 346 aa16.71■□□□□ 0.27
SHMT1-209ENST00000582653 OR10H4Q8NGA5 316 aa16.71■□□□□ 0.27
SHMT1-209ENST00000582653 OR2T27Q8NH04 317 aa16.71■□□□□ 0.27
SHMT1-209ENST00000582653 OR5R1Q8NH85 324 aa16.71■□□□□ 0.27
SHMT1-209ENST00000582653 TRMT10AQ8TBZ6 339 aaKnown RBP16.71■□□□□ 0.27
SHMT1-209ENST00000582653 C17orf50Q8WW18 174 aa16.71■□□□□ 0.27
SHMT1-209ENST00000582653 RORBQ92753 470 aa16.71■□□□□ 0.27
SHMT1-209ENST00000582653 UBE2FQ969M7 185 aa16.71■□□□□ 0.27
SHMT1-209ENST00000582653 EME1Q96AY2 570 aa16.71■□□□□ 0.27
SHMT1-209ENST00000582653 CENPNQ96H22 339 aaPredicted RBP16.71■□□□□ 0.27
SHMT1-209ENST00000582653 OSBPL10Q9BXB5 764 aa16.71■□□□□ 0.27
SHMT1-209ENST00000582653 GABARAPL3Q9BY60 117 aa16.71■□□□□ 0.27
SHMT1-209ENST00000582653 TRBV23-1A0A0A0MS06 115 aa16.7■□□□□ 0.26
SHMT1-209ENST00000582653 FAM230AA0A1W2PPH8 454 aa16.7■□□□□ 0.26
Retrieved 100 of 20,778 RNA–protein pairs in 53.1 ms