RNA–Protein interactions for RNA: ENST00000579558.5

SHMT1-206, Transcript of serine hydroxymethyltransferase 1, humanhuman

TSL 2

Gene SHMT1, Length 1,077 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT1-206ENST00000579558 NPRL2Q8WTW4 380 aa19.74■□□□□ 0.75
SHMT1-206ENST00000579558 H1FXQ92522 213 aaKnown RBP19.74■□□□□ 0.75
SHMT1-206ENST00000579558 MRPL48Q96GC5 212 aaKnown RBP19.74■□□□□ 0.75
SHMT1-206ENST00000579558 ZNF488Q96MN9 340 aa19.74■□□□□ 0.75
SHMT1-206ENST00000579558 RDH12Q96NR8 316 aa19.74■□□□□ 0.75
SHMT1-206ENST00000579558 AMBNQ9NP70 447 aa19.74■□□□□ 0.75
SHMT1-206ENST00000579558 SLC25A10Q9UBX3 287 aaPredicted RBP19.74■□□□□ 0.75
SHMT1-206ENST00000579558 SLC7A11Q9UPY5 501 aa19.74■□□□□ 0.75
SHMT1-206ENST00000579558 POLDIP2Q9Y2S7 368 aa19.74■□□□□ 0.75
SHMT1-206ENST00000579558 IGKV1D-17A0A075B6S4 117 aa19.73■□□□□ 0.75
SHMT1-206ENST00000579558 FAM230AA0A1W2PPH8 454 aa19.73■□□□□ 0.75
SHMT1-206ENST00000579558 DNAJC9-AS1A6NH13 148 aa19.73■□□□□ 0.75
SHMT1-206ENST00000579558 J3QLW9 94 aa19.73■□□□□ 0.75
SHMT1-206ENST00000579558 GATBO75879 557 aaKnown RBP19.73■□□□□ 0.75
SHMT1-206ENST00000579558 HTR1AP08908 422 aa19.73■□□□□ 0.75
SHMT1-206ENST00000579558 ZNF19P17023 458 aa19.73■□□□□ 0.75
SHMT1-206ENST00000579558 BAMBIQ13145 260 aa19.73■□□□□ 0.75
SHMT1-206ENST00000579558 SMIM21Q3B7S5 101 aa19.73■□□□□ 0.75
SHMT1-206ENST00000579558 TMEM244Q5VVB8 128 aa19.73■□□□□ 0.75
SHMT1-206ENST00000579558 ACP7Q6ZNF0 438 aa19.73■□□□□ 0.75
SHMT1-206ENST00000579558 LY6G5BQ8NDX9 201 aa19.73■□□□□ 0.75
SHMT1-206ENST00000579558 C4orf36Q96KX1 117 aa19.73■□□□□ 0.75
SHMT1-206ENST00000579558 DUX5Q96PT3 197 aa19.73■□□□□ 0.75
SHMT1-206ENST00000579558 DCTN5Q9BTE1 182 aa19.73■□□□□ 0.75
SHMT1-206ENST00000579558 ONECUT1Q9UBC0 465 aa19.73■□□□□ 0.75
SHMT1-206ENST00000579558 FADS2O95864 444 aaKnown RBP19.72■□□□□ 0.75
SHMT1-206ENST00000579558 PGA5P0DJD9 388 aa19.72■□□□□ 0.75
SHMT1-206ENST00000579558 BPIFB3P59826 476 aa19.72■□□□□ 0.75
SHMT1-206ENST00000579558 PDCD1Q15116 288 aa19.72■□□□□ 0.75
SHMT1-206ENST00000579558 UBE2V2Q15819 145 aa19.72■□□□□ 0.75
SHMT1-206ENST00000579558 RUSC1-AS1Q66K80 236 aa19.72■□□□□ 0.75
SHMT1-206ENST00000579558 FDX2Q6P4F2 183 aa19.72■□□□□ 0.75
SHMT1-206ENST00000579558 LHFPL3Q86UP9 236 aa19.72■□□□□ 0.75
SHMT1-206ENST00000579558 C10orf35Q96D05 121 aa19.72■□□□□ 0.75
SHMT1-206ENST00000579558 MYCBPQ99417 103 aaPredicted RBP19.72■□□□□ 0.75
SHMT1-206ENST00000579558 ALG8Q9BVK2 526 aa19.72■□□□□ 0.75
SHMT1-206ENST00000579558 CHST5Q9GZS9 411 aa19.72■□□□□ 0.75
SHMT1-206ENST00000579558 FRRS1LQ9P0K9 344 aa19.72■□□□□ 0.75
SHMT1-206ENST00000579558 ZNF222Q9UK12 451 aa19.72■□□□□ 0.75
SHMT1-206ENST00000579558 KPTNQ9Y664 436 aa19.72■□□□□ 0.75
SHMT1-206ENST00000579558 NOS1APO75052 506 aaPredicted RBP19.71■□□□□ 0.75
SHMT1-206ENST00000579558 SERPINA3P01011 423 aa19.71■□□□□ 0.75
SHMT1-206ENST00000579558 NDUFB7P17568 137 aa19.71■□□□□ 0.75
SHMT1-206ENST00000579558 PRTN3P24158 256 aa19.71■□□□□ 0.75
SHMT1-206ENST00000579558 MPZP25189 248 aa19.71■□□□□ 0.75
SHMT1-206ENST00000579558 NANOS3P60323 173 aaKnown RBP19.71■□□□□ 0.75
SHMT1-206ENST00000579558 GALEQ14376 348 aa19.71■□□□□ 0.75
SHMT1-206ENST00000579558 LRRC36Q1X8D7 754 aa19.71■□□□□ 0.75
SHMT1-206ENST00000579558 ANGPTL5Q86XS5 388 aa19.71■□□□□ 0.75
SHMT1-206ENST00000579558 CALHM1Q8IU99 346 aa19.71■□□□□ 0.75
SHMT1-206ENST00000579558 APH1BQ8WW43 257 aa19.71■□□□□ 0.75
SHMT1-206ENST00000579558 GCDHQ92947 438 aaPredicted RBP19.71■□□□□ 0.75
SHMT1-206ENST00000579558 LHX4Q969G2 390 aa19.71■□□□□ 0.75
SHMT1-206ENST00000579558 PELI1Q96FA3 418 aa19.71■□□□□ 0.75
SHMT1-206ENST00000579558 MYRFQ9Y2G1 1151 aa19.71■□□□□ 0.75
SHMT1-206ENST00000579558 RPL36Q9Y3U8 105 aaKnown RBP19.71■□□□□ 0.75
SHMT1-206ENST00000579558 CENPVL3A0A0U1RRI6 287 aa19.7■□□□□ 0.74
SHMT1-206ENST00000579558 MDFIC2A0A1B0GVS7 189 aa19.7■□□□□ 0.74
SHMT1-206ENST00000579558 RFPL4AA6NLU0 287 aa19.7■□□□□ 0.74
SHMT1-206ENST00000579558 RFPL4AL1F8VTS6 287 aa19.7■□□□□ 0.74
SHMT1-206ENST00000579558 NXPH2O95156 264 aa19.7■□□□□ 0.74
SHMT1-206ENST00000579558 IGHA1P01876 353 aa19.7■□□□□ 0.74
SHMT1-206ENST00000579558 CAV3P56539 151 aa19.7■□□□□ 0.74
SHMT1-206ENST00000579558 RAB40BQ12829 278 aa19.7■□□□□ 0.74
SHMT1-206ENST00000579558 RCN1Q15293 331 aa19.7■□□□□ 0.74
SHMT1-206ENST00000579558 C12orf54Q6X4T0 127 aa19.7■□□□□ 0.74
SHMT1-206ENST00000579558 CMTM4Q8IZR5 234 aa19.7■□□□□ 0.74
SHMT1-206ENST00000579558 BATF2Q8N1L9 274 aa19.7■□□□□ 0.74
SHMT1-206ENST00000579558 ZNRF1Q8ND25 227 aa19.7■□□□□ 0.74
SHMT1-206ENST00000579558 TMEM185AQ8NFB2 350 aa19.7■□□□□ 0.74
SHMT1-206ENST00000579558 C8orf46Q8TAG6 207 aa19.7■□□□□ 0.74
SHMT1-206ENST00000579558 GATAD2BQ8WXI9 593 aa19.7■□□□□ 0.74
SHMT1-206ENST00000579558 PP6455Q8WZ26 134 aa19.7■□□□□ 0.74
SHMT1-206ENST00000579558 DMRTB1Q96MA1 342 aa19.7■□□□□ 0.74
SHMT1-206ENST00000579558 C1orf147Q96MC9 270 aaPredicted RBP19.7■□□□□ 0.74
SHMT1-206ENST00000579558 NRIP2Q9BQI9 281 aa19.7■□□□□ 0.74
SHMT1-206ENST00000579558 PKIBQ9C010 78 aa19.7■□□□□ 0.74
SHMT1-206ENST00000579558 ZMAT3Q9HA38 289 aaKnown RBP19.7■□□□□ 0.74
SHMT1-206ENST00000579558 INPP5EQ9NRR6 644 aa19.7■□□□□ 0.74
SHMT1-206ENST00000579558 MAB21L2Q9Y586 359 aa19.7■□□□□ 0.74
SHMT1-206ENST00000579558 ISG15P05161 165 aa19.69■□□□□ 0.74
SHMT1-206ENST00000579558 CCR9P51686 369 aa19.69■□□□□ 0.74
SHMT1-206ENST00000579558 FUT6P51993 359 aa19.69■□□□□ 0.74
SHMT1-206ENST00000579558 IL24Q13007 206 aa19.69■□□□□ 0.74
SHMT1-206ENST00000579558 CNN3Q15417 329 aaKnown RBP19.69■□□□□ 0.74
SHMT1-206ENST00000579558 DEFB112Q30KQ8 113 aa19.69■□□□□ 0.74
SHMT1-206ENST00000579558 LPCAT4Q643R3 524 aa19.69■□□□□ 0.74
SHMT1-206ENST00000579558 VMO1Q7Z5L0 202 aa19.69■□□□□ 0.74
SHMT1-206ENST00000579558 SYS1Q8N2H4 156 aa19.69■□□□□ 0.74
SHMT1-206ENST00000579558 KIR3DL3Q8N743 410 aa19.69■□□□□ 0.74
SHMT1-206ENST00000579558 OR52I1Q8NGK6 324 aa19.69■□□□□ 0.74
SHMT1-206ENST00000579558 ZDHHC16Q969W1 377 aa19.69■□□□□ 0.74
SHMT1-206ENST00000579558 ADAT3Q96EY9 351 aaPredicted RBP19.69■□□□□ 0.74
SHMT1-206ENST00000579558 SDSLQ96GA7 329 aa19.69■□□□□ 0.74
SHMT1-206ENST00000579558 ELL3Q9HB65 397 aaPredicted RBP19.69■□□□□ 0.74
SHMT1-206ENST00000579558 ERVK13-1Q9NX77 482 aa19.69■□□□□ 0.74
SHMT1-206ENST00000579558 IGHV1-69DA0A0B4J2H0 117 aa19.68■□□□□ 0.74
SHMT1-206ENST00000579558 IGHV1-69P01742 117 aa19.68■□□□□ 0.74
SHMT1-206ENST00000579558 ZNF20P17024 532 aa19.68■□□□□ 0.74
SHMT1-206ENST00000579558 CAPZA1P52907 286 aa19.68■□□□□ 0.74
Retrieved 100 of 20,778 RNA–protein pairs in 29.7 ms