RNA–Protein interactions for RNA: ENST00000573474.5

CCDC40-209, Transcript of coiled-coil domain containing 40, humanhuman

TSL 4

Gene CCDC40, Length 554 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC40-209ENST00000573474 TMEM69Q5SWH9 247 aa11.65□□□□□ -0.54
CCDC40-209ENST00000573474 RAB12Q6IQ22 244 aa11.65□□□□□ -0.54
CCDC40-209ENST00000573474 C16orf87Q6PH81 154 aa11.65□□□□□ -0.54
CCDC40-209ENST00000573474 BIVMQ86UB2 503 aa11.65□□□□□ -0.54
CCDC40-209ENST00000573474 TMEM104Q8NE00 496 aa11.65□□□□□ -0.54
CCDC40-209ENST00000573474 OR4M2Q8NGB6 313 aa11.65□□□□□ -0.54
CCDC40-209ENST00000573474 C15orf40Q8WUR7 153 aa11.65□□□□□ -0.54
CCDC40-209ENST00000573474 PIK3IP1Q96FE7 263 aa11.65□□□□□ -0.54
CCDC40-209ENST00000573474 TMEM204Q9BSN7 226 aa11.65□□□□□ -0.54
CCDC40-209ENST00000573474 URM1Q9BTM9 101 aaKnown RBP11.65□□□□□ -0.54
CCDC40-209ENST00000573474 CCDC32Q9BV29 185 aa11.65□□□□□ -0.54
CCDC40-209ENST00000573474 TMEM59Q9BXS4 323 aa11.65□□□□□ -0.54
CCDC40-209ENST00000573474 SRRQ9GZT4 340 aa11.65□□□□□ -0.54
CCDC40-209ENST00000573474 PLK3Q9H4B4 646 aa11.65□□□□□ -0.54
CCDC40-209ENST00000573474 BANF2Q9H503 90 aa11.65□□□□□ -0.54
CCDC40-209ENST00000573474 PALMDQ9NP74 551 aa11.65□□□□□ -0.54
CCDC40-209ENST00000573474 HCFC1P51610 2035 aa11.65□□□□□ -0.54
CCDC40-209ENST00000573474 CADP27708 2225 aa11.64□□□□□ -0.55
CCDC40-209ENST00000573474 IGKV1-12A0A0C4DH73 117 aa11.64□□□□□ -0.55
CCDC40-209ENST00000573474 F5H5P2 479 aa11.64□□□□□ -0.55
CCDC40-209ENST00000573474 J3QT63 122 aa11.64□□□□□ -0.55
CCDC40-209ENST00000573474 HTR3BO95264 441 aa11.64□□□□□ -0.55
CCDC40-209ENST00000573474 IGKV1D-12P01611 117 aa11.64□□□□□ -0.55
CCDC40-209ENST00000573474 CHRM2P08172 466 aa11.64□□□□□ -0.55
CCDC40-209ENST00000573474 MGMTP16455 207 aa11.64□□□□□ -0.55
CCDC40-209ENST00000573474 SERPINA2P20848 420 aa11.64□□□□□ -0.55
CCDC40-209ENST00000573474 MPZP25189 248 aa11.64□□□□□ -0.55
CCDC40-209ENST00000573474 APOBEC3AP31941 199 aaPredicted RBP11.64□□□□□ -0.55
CCDC40-209ENST00000573474 SERPINF1P36955 418 aa11.64□□□□□ -0.55
CCDC40-209ENST00000573474 RPS27AP62979 156 aaKnown RBP11.64□□□□□ -0.55
CCDC40-209ENST00000573474 IL24Q13007 206 aa11.64□□□□□ -0.55
CCDC40-209ENST00000573474 NKPD1Q17RQ9 610 aa11.64□□□□□ -0.55
CCDC40-209ENST00000573474 HAGHLQ6PII5 290 aaPredicted RBP11.64□□□□□ -0.55
CCDC40-209ENST00000573474 IZUMO1Q8IYV9 350 aa11.64□□□□□ -0.55
CCDC40-209ENST00000573474 OR2Z1Q8NG97 314 aa11.64□□□□□ -0.55
CCDC40-209ENST00000573474 OR10AD1Q8NGE0 317 aa11.64□□□□□ -0.55
CCDC40-209ENST00000573474 OR10K1Q8NGX5 313 aa11.64□□□□□ -0.55
CCDC40-209ENST00000573474 MRPS24Q96EL2 167 aaKnown RBP11.64□□□□□ -0.55
CCDC40-209ENST00000573474 SDHCQ99643 169 aaPredicted RBP11.64□□□□□ -0.55
CCDC40-209ENST00000573474 LPAR5Q9H1C0 372 aa11.64□□□□□ -0.55
CCDC40-209ENST00000573474 MRPS7Q9Y2R9 242 aaKnown RBP11.64□□□□□ -0.55
CCDC40-209ENST00000573474 A0A1W2PP11 408 aa11.63□□□□□ -0.55
CCDC40-209ENST00000573474 ZSCAN5BA6NJL1 495 aa11.63□□□□□ -0.55
CCDC40-209ENST00000573474 TRAPPC2LH3BP13 241 aa11.63□□□□□ -0.55
CCDC40-209ENST00000573474 C19orf84I3L1E1 186 aa11.63□□□□□ -0.55
CCDC40-209ENST00000573474 CTDSPLO15194 276 aa11.63□□□□□ -0.55
CCDC40-209ENST00000573474 UPK1BO75841 260 aa11.63□□□□□ -0.55
CCDC40-209ENST00000573474 PLAUP00749 431 aa11.63□□□□□ -0.55
CCDC40-209ENST00000573474 GRPP07492 148 aa11.63□□□□□ -0.55
CCDC40-209ENST00000573474 GTF2F2P13984 249 aa11.63□□□□□ -0.55
CCDC40-209ENST00000573474 IGFBP2P18065 325 aa11.63□□□□□ -0.55
CCDC40-209ENST00000573474 CD200P41217 278 aa11.63□□□□□ -0.55
CCDC40-209ENST00000573474 PTH2RP49190 550 aa11.63□□□□□ -0.55
CCDC40-209ENST00000573474 ZNF81P51508 661 aa11.63□□□□□ -0.55
CCDC40-209ENST00000573474 TAS2R20P59543 309 aa11.63□□□□□ -0.55
CCDC40-209ENST00000573474 ZNF672Q499Z4 452 aaPredicted RBP11.63□□□□□ -0.55
CCDC40-209ENST00000573474 ELP2Q6IA86 826 aa11.63□□□□□ -0.55
CCDC40-209ENST00000573474 WDR86Q86TI4 376 aa11.63□□□□□ -0.55
CCDC40-209ENST00000573474 OSR2Q8N2R0 312 aa11.63□□□□□ -0.55
CCDC40-209ENST00000573474 FAM89BQ8N5H3 189 aa11.63□□□□□ -0.55
CCDC40-209ENST00000573474 SCCPDHQ8NBX0 429 aa11.63□□□□□ -0.55
CCDC40-209ENST00000573474 Q8NFD4 153 aa11.63□□□□□ -0.55
CCDC40-209ENST00000573474 OR51T1Q8NGJ9 327 aa11.63□□□□□ -0.55
CCDC40-209ENST00000573474 AQP3Q92482 292 aa11.63□□□□□ -0.55
CCDC40-209ENST00000573474 GTF3AQ92664 365 aaKnown RBP11.63□□□□□ -0.55
CCDC40-209ENST00000573474 NEUROG1Q92886 237 aa11.63□□□□□ -0.55
CCDC40-209ENST00000573474 SLAMF9Q96A28 289 aa11.63□□□□□ -0.55
CCDC40-209ENST00000573474 POM121Q96HA1 1249 aa11.63□□□□□ -0.55
CCDC40-209ENST00000573474 HS3ST6Q96QI5 342 aa11.63□□□□□ -0.55
CCDC40-209ENST00000573474 ABHD1Q96SE0 405 aa11.63□□□□□ -0.55
CCDC40-209ENST00000573474 GAL3ST1Q99999 423 aa11.63□□□□□ -0.55
CCDC40-209ENST00000573474 DHRS9Q9BPW9 319 aa11.63□□□□□ -0.55
CCDC40-209ENST00000573474 NUDT16L1Q9BRJ7 211 aaKnown RBP11.63□□□□□ -0.55
CCDC40-209ENST00000573474 TM2D1Q9BX74 207 aa11.63□□□□□ -0.55
CCDC40-209ENST00000573474 SELENOIQ9C0D9 397 aa11.63□□□□□ -0.55
CCDC40-209ENST00000573474 RHOFQ9HBH0 211 aa11.63□□□□□ -0.55
CCDC40-209ENST00000573474 CISD1Q9NZ45 108 aaKnown RBP11.63□□□□□ -0.55
CCDC40-209ENST00000573474 MTCH1Q9NZJ7 389 aa11.63□□□□□ -0.55
CCDC40-209ENST00000573474 ZDHHC8Q9ULC8 765 aa11.63□□□□□ -0.55
CCDC40-209ENST00000573474 POLDIP2Q9Y2S7 368 aa11.63□□□□□ -0.55
CCDC40-209ENST00000573474 ZNF462Q96JM2 2506 aa11.63□□□□□ -0.55
CCDC40-209ENST00000573474 TRAV18A0A075B6X5 111 aa11.62□□□□□ -0.55
CCDC40-209ENST00000573474 RAB27BO00194 218 aa11.62□□□□□ -0.55
CCDC40-209ENST00000573474 SPRY3O43610 288 aa11.62□□□□□ -0.55
CCDC40-209ENST00000573474 SYNGR1O43759 233 aa11.62□□□□□ -0.55
CCDC40-209ENST00000573474 HLA-DQB1P01920 261 aa11.62□□□□□ -0.55
CCDC40-209ENST00000573474 SFTPBP07988 381 aa11.62□□□□□ -0.55
CCDC40-209ENST00000573474 ACAA1P09110 424 aaPredicted RBP11.62□□□□□ -0.55
CCDC40-209ENST00000573474 BCL3P20749 454 aa11.62□□□□□ -0.55
CCDC40-209ENST00000573474 TNFSF4P23510 183 aa11.62□□□□□ -0.55
CCDC40-209ENST00000573474 VEGFCP49767 419 aa11.62□□□□□ -0.55
CCDC40-209ENST00000573474 ZNF154Q13106 437 aa11.62□□□□□ -0.55
CCDC40-209ENST00000573474 MAB21L1Q13394 359 aa11.62□□□□□ -0.55
CCDC40-209ENST00000573474 EFNB3Q15768 340 aa11.62□□□□□ -0.55
CCDC40-209ENST00000573474 ZNF181Q2M3W8 571 aa11.62□□□□□ -0.55
CCDC40-209ENST00000573474 OR8H2Q8N162 312 aa11.62□□□□□ -0.55
CCDC40-209ENST00000573474 Q8N402 240 aa11.62□□□□□ -0.55
CCDC40-209ENST00000573474 CELF2-AS1Q8N7Q2 184 aa11.62□□□□□ -0.55
CCDC40-209ENST00000573474 ACBD4Q8NC06 268 aa11.62□□□□□ -0.55
CCDC40-209ENST00000573474 OR56B1Q8NGI3 324 aa11.62□□□□□ -0.55
Retrieved 100 of 20,778 RNA–protein pairs in 44.7 ms