RNA–Protein interactions for RNA: ENST00000572607.1

VPS53-214, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 3

Gene VPS53, Length 732 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-214ENST00000572607 IGHV3OR16-10A0A075B7F0 116 aa6.71□□□□□ -1.34
VPS53-214ENST00000572607 A0A1B0GTI1 187 aa6.71□□□□□ -1.34
VPS53-214ENST00000572607 LOC100130705A0A1B0GUX0 176 aa6.71□□□□□ -1.34
VPS53-214ENST00000572607 OR2AT4A6NND4 320 aa6.71□□□□□ -1.34
VPS53-214ENST00000572607 TNFRSF13BO14836 293 aaPredicted RBP6.71□□□□□ -1.34
VPS53-214ENST00000572607 SLC16A6O15403 523 aa6.71□□□□□ -1.34
VPS53-214ENST00000572607 RHBDL1O75783 438 aa6.71□□□□□ -1.34
VPS53-214ENST00000572607 FADS2O95864 444 aaKnown RBP6.71□□□□□ -1.34
VPS53-214ENST00000572607 HTR1AP08908 422 aa6.71□□□□□ -1.34
VPS53-214ENST00000572607 IGHV4-38-2P0DP08 117 aa6.71□□□□□ -1.34
VPS53-214ENST00000572607 ZNF20P17024 532 aa6.71□□□□□ -1.34
VPS53-214ENST00000572607 NDUFB7P17568 137 aa6.71□□□□□ -1.34
VPS53-214ENST00000572607 CCL1P22362 96 aa6.71□□□□□ -1.34
VPS53-214ENST00000572607 CAPZA1P52907 286 aa6.71□□□□□ -1.34
VPS53-214ENST00000572607 BPIFB3P59826 476 aa6.71□□□□□ -1.34
VPS53-214ENST00000572607 ZNF85Q03923 595 aa6.71□□□□□ -1.34
VPS53-214ENST00000572607 ZNF91Q05481 1191 aa6.71□□□□□ -1.34
VPS53-214ENST00000572607 PDCD1Q15116 288 aa6.71□□□□□ -1.34
VPS53-214ENST00000572607 CNN3Q15417 329 aaKnown RBP6.71□□□□□ -1.34
VPS53-214ENST00000572607 SMIM21Q3B7S5 101 aa6.71□□□□□ -1.34
VPS53-214ENST00000572607 KLF17Q5JT82 389 aaPredicted RBP6.71□□□□□ -1.34
VPS53-214ENST00000572607 ATPAF1Q5TC12 328 aaPredicted RBP6.71□□□□□ -1.34
VPS53-214ENST00000572607 TMEM244Q5VVB8 128 aa6.71□□□□□ -1.34
VPS53-214ENST00000572607 TMEM42Q69YG0 159 aa6.71□□□□□ -1.34
VPS53-214ENST00000572607 ACBD7Q8N6N7 88 aa6.71□□□□□ -1.34
VPS53-214ENST00000572607 TMEM185AQ8NFB2 350 aa6.71□□□□□ -1.34
VPS53-214ENST00000572607 OR5T2Q8NGG2 359 aa6.71□□□□□ -1.34
VPS53-214ENST00000572607 FAM216AQ8WUB2 273 aa6.71□□□□□ -1.34
VPS53-214ENST00000572607 GATAD2BQ8WXI9 593 aa6.71□□□□□ -1.34
VPS53-214ENST00000572607 AQP3Q92482 292 aa6.71□□□□□ -1.34
VPS53-214ENST00000572607 H1FXQ92522 213 aaKnown RBP6.71□□□□□ -1.34
VPS53-214ENST00000572607 RORBQ92753 470 aa6.71□□□□□ -1.34
VPS53-214ENST00000572607 GCDHQ92947 438 aaPredicted RBP6.71□□□□□ -1.34
VPS53-214ENST00000572607 UBE2FQ969M7 185 aa6.71□□□□□ -1.34
VPS53-214ENST00000572607 C10orf35Q96D05 121 aa6.71□□□□□ -1.34
VPS53-214ENST00000572607 RDH12Q96NR8 316 aa6.71□□□□□ -1.34
VPS53-214ENST00000572607 WDFY2Q96P53 400 aa6.71□□□□□ -1.34
VPS53-214ENST00000572607 MBOAT4Q96T53 435 aa6.71□□□□□ -1.34
VPS53-214ENST00000572607 CNTD2Q9H8S5 307 aa6.71□□□□□ -1.34
VPS53-214ENST00000572607 NEK6Q9HC98 313 aa6.71□□□□□ -1.34
VPS53-214ENST00000572607 C8orf4Q9NR00 106 aa6.71□□□□□ -1.34
VPS53-214ENST00000572607 INPP5EQ9NRR6 644 aa6.71□□□□□ -1.34
VPS53-214ENST00000572607 ACOXLQ9NUZ1 547 aa6.71□□□□□ -1.34
VPS53-214ENST00000572607 SMPD3Q9NY59 655 aaPredicted RBP6.71□□□□□ -1.34
VPS53-214ENST00000572607 ZKSCAN7Q9P0L1 754 aaPredicted RBP6.71□□□□□ -1.34
VPS53-214ENST00000572607 ONECUT1Q9UBC0 465 aa6.71□□□□□ -1.34
VPS53-214ENST00000572607 SLC25A10Q9UBX3 287 aaPredicted RBP6.71□□□□□ -1.34
VPS53-214ENST00000572607 RPUSD1Q9UJJ7 312 aaKnown RBP6.71□□□□□ -1.34
VPS53-214ENST00000572607 RPL36Q9Y3U8 105 aaKnown RBP6.71□□□□□ -1.34
VPS53-214ENST00000572607 KRTAP4-8A0A0G2JLE6 195 aa6.7□□□□□ -1.34
VPS53-214ENST00000572607 LOC107986453A0A1B0GWG9 222 aa6.7□□□□□ -1.34
VPS53-214ENST00000572607 A0A1W2PPH5 198 aa6.7□□□□□ -1.34
VPS53-214ENST00000572607 FAM230AA0A1W2PPH8 454 aa6.7□□□□□ -1.34
VPS53-214ENST00000572607 A0A1W2PQ09 198 aa6.7□□□□□ -1.34
VPS53-214ENST00000572607 A6NIN4 97 aa6.7□□□□□ -1.34
VPS53-214ENST00000572607 H3BSH0 61 aa6.7□□□□□ -1.34
VPS53-214ENST00000572607 ANKHD1-EIF4EBP3H7C0V5 636 aaPredicted RBP6.7□□□□□ -1.34
VPS53-214ENST00000572607 J3QLW9 94 aa6.7□□□□□ -1.34
VPS53-214ENST00000572607 J3QT63 122 aa6.7□□□□□ -1.34
VPS53-214ENST00000572607 SLC1A7O00341 560 aa6.7□□□□□ -1.34
VPS53-214ENST00000572607 SIGLEC5O15389 551 aa6.7□□□□□ -1.34
VPS53-214ENST00000572607 NXPH2O95156 264 aa6.7□□□□□ -1.34
VPS53-214ENST00000572607 CYB5AP00167 134 aa6.7□□□□□ -1.34
VPS53-214ENST00000572607 SFTPBP07988 381 aa6.7□□□□□ -1.34
VPS53-214ENST00000572607 RPSAP08865 295 aaKnown RBP6.7□□□□□ -1.34
VPS53-214ENST00000572607 ZNF19P17023 458 aa6.7□□□□□ -1.34
VPS53-214ENST00000572607 FUT6P51993 359 aa6.7□□□□□ -1.34
VPS53-214ENST00000572607 ARF6P62330 175 aa6.7□□□□□ -1.34
VPS53-214ENST00000572607 UBA52P62987 128 aaKnown RBP6.7□□□□□ -1.34
VPS53-214ENST00000572607 RAB40BQ12829 278 aa6.7□□□□□ -1.34
VPS53-214ENST00000572607 MRPL28Q13084 256 aaKnown RBP6.7□□□□□ -1.34
VPS53-214ENST00000572607 BLMHQ13867 455 aa6.7□□□□□ -1.34
VPS53-214ENST00000572607 CDONQ4KMG0 1287 aa6.7□□□□□ -1.34
VPS53-214ENST00000572607 KLHL22Q53GT1 634 aa6.7□□□□□ -1.34
VPS53-214ENST00000572607 DMRTC1Q5HYR2 192 aa6.7□□□□□ -1.34
VPS53-214ENST00000572607 ZNF788Q6ZQV5 615 aa6.7□□□□□ -1.34
VPS53-214ENST00000572607 C9orf139Q6ZV77 190 aa6.7□□□□□ -1.34
VPS53-214ENST00000572607 ENTHD1Q8IYW4 607 aa6.7□□□□□ -1.34
VPS53-214ENST00000572607 BCL6BQ8N143 479 aaPredicted RBP6.7□□□□□ -1.34
VPS53-214ENST00000572607 POC1AQ8NBT0 407 aa6.7□□□□□ -1.34
VPS53-214ENST00000572607 ANGPTL6Q8NI99 470 aa6.7□□□□□ -1.34
VPS53-214ENST00000572607 TRMT10AQ8TBZ6 339 aaKnown RBP6.7□□□□□ -1.34
VPS53-214ENST00000572607 HAVCR2Q8TDQ0 301 aa6.7□□□□□ -1.34
VPS53-214ENST00000572607 PP6455Q8WZ26 134 aa6.7□□□□□ -1.34
VPS53-214ENST00000572607 SLC25A28Q96A46 364 aa6.7□□□□□ -1.34
VPS53-214ENST00000572607 DACT3Q96B18 629 aaPredicted RBP6.7□□□□□ -1.34
VPS53-214ENST00000572607 LGALS12Q96DT0 336 aa6.7□□□□□ -1.34
VPS53-214ENST00000572607 SEH1LQ96EE3 360 aa6.7□□□□□ -1.34
VPS53-214ENST00000572607 BORCS8Q96FH0 119 aa6.7□□□□□ -1.34
VPS53-214ENST00000572607 DMRTB1Q96MA1 342 aa6.7□□□□□ -1.34
VPS53-214ENST00000572607 GAFA1Q96PS6 74 aa6.7□□□□□ -1.34
VPS53-214ENST00000572607 SLC29A1Q99808 456 aa6.7□□□□□ -1.34
VPS53-214ENST00000572607 ALG8Q9BVK2 526 aa6.7□□□□□ -1.34
VPS53-214ENST00000572607 CHST5Q9GZS9 411 aa6.7□□□□□ -1.34
VPS53-214ENST00000572607 FGF23Q9GZV9 251 aaPredicted RBP6.7□□□□□ -1.34
VPS53-214ENST00000572607 WDR13Q9H1Z4 485 aa6.7□□□□□ -1.34
VPS53-214ENST00000572607 FAM118AQ9NWS6 357 aa6.7□□□□□ -1.34
VPS53-214ENST00000572607 EXOGQ9Y2C4 368 aaKnown RBP6.7□□□□□ -1.34
VPS53-214ENST00000572607 KPTNQ9Y664 436 aa6.7□□□□□ -1.34
VPS53-214ENST00000572607 PRKDCP78527 4128 aaKnown RBP6.69□□□□□ -1.34
Retrieved 100 of 20,778 RNA–protein pairs in 37.1 ms