RNA–Protein interactions for RNA: ENST00000572290.1

NUP88-204, Transcript of nucleoporin 88, humanhuman

TSL 5

Gene NUP88, Length 615 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP88-204ENST00000572290 FDX2Q6P4F2 183 aa16.65■□□□□ 0.26
NUP88-204ENST00000572290 TRMT10AQ8TBZ6 339 aaKnown RBP16.65■□□□□ 0.26
NUP88-204ENST00000572290 FAM216AQ8WUB2 273 aa16.65■□□□□ 0.26
NUP88-204ENST00000572290 C10orf35Q96D05 121 aa16.65■□□□□ 0.26
NUP88-204ENST00000572290 C4orf36Q96KX1 117 aa16.65■□□□□ 0.26
NUP88-204ENST00000572290 ZNF488Q96MN9 340 aa16.65■□□□□ 0.26
NUP88-204ENST00000572290 ZNF48Q96MX3 618 aaPredicted RBP16.65■□□□□ 0.26
NUP88-204ENST00000572290 FRRS1LQ9P0K9 344 aa16.65■□□□□ 0.26
NUP88-204ENST00000572290 MYRFQ9Y2G1 1151 aa16.65■□□□□ 0.26
NUP88-204ENST00000572290 RPL36Q9Y3U8 105 aaKnown RBP16.65■□□□□ 0.26
NUP88-204ENST00000572290 IGKV1D-17A0A075B6S4 117 aa16.64■□□□□ 0.25
NUP88-204ENST00000572290 FAM230AA0A1W2PPH8 454 aa16.64■□□□□ 0.25
NUP88-204ENST00000572290 PGA5P0DJD9 388 aa16.64■□□□□ 0.25
NUP88-204ENST00000572290 CCR9P51686 369 aa16.64■□□□□ 0.25
NUP88-204ENST00000572290 BPIFB3P59826 476 aa16.64■□□□□ 0.25
NUP88-204ENST00000572290 NANOS3P60323 173 aaKnown RBP16.64■□□□□ 0.25
NUP88-204ENST00000572290 RAB40BQ12829 278 aa16.64■□□□□ 0.25
NUP88-204ENST00000572290 GALEQ14376 348 aa16.64■□□□□ 0.25
NUP88-204ENST00000572290 RCN1Q15293 331 aa16.64■□□□□ 0.25
NUP88-204ENST00000572290 UBE2V2Q15819 145 aa16.64■□□□□ 0.25
NUP88-204ENST00000572290 LRRC36Q1X8D7 754 aa16.64■□□□□ 0.25
NUP88-204ENST00000572290 ACP7Q6ZNF0 438 aa16.64■□□□□ 0.25
NUP88-204ENST00000572290 LHFPL3Q86UP9 236 aa16.64■□□□□ 0.25
NUP88-204ENST00000572290 LY6G5BQ8NDX9 201 aa16.64■□□□□ 0.25
NUP88-204ENST00000572290 NPRL2Q8WTW4 380 aa16.64■□□□□ 0.25
NUP88-204ENST00000572290 APH1BQ8WW43 257 aa16.64■□□□□ 0.25
NUP88-204ENST00000572290 PELI1Q96FA3 418 aa16.64■□□□□ 0.25
NUP88-204ENST00000572290 TBX15Q96SF7 602 aa16.64■□□□□ 0.25
NUP88-204ENST00000572290 DCTN5Q9BTE1 182 aa16.64■□□□□ 0.25
NUP88-204ENST00000572290 ALG8Q9BVK2 526 aa16.64■□□□□ 0.25
NUP88-204ENST00000572290 CHST5Q9GZS9 411 aa16.64■□□□□ 0.25
NUP88-204ENST00000572290 SIRPDQ9H106 197 aa16.64■□□□□ 0.25
NUP88-204ENST00000572290 C8orf4Q9NR00 106 aa16.64■□□□□ 0.25
NUP88-204ENST00000572290 INPP5EQ9NRR6 644 aa16.64■□□□□ 0.25
NUP88-204ENST00000572290 SLC25A10Q9UBX3 287 aaPredicted RBP16.64■□□□□ 0.25
NUP88-204ENST00000572290 ZNF222Q9UK12 451 aa16.64■□□□□ 0.25
NUP88-204ENST00000572290 SOX21Q9Y651 276 aaPredicted RBP16.64■□□□□ 0.25
NUP88-204ENST00000572290 NOS1APO75052 506 aaPredicted RBP16.63■□□□□ 0.25
NUP88-204ENST00000572290 IGHA1P01876 353 aa16.63■□□□□ 0.25
NUP88-204ENST00000572290 MPZP25189 248 aa16.63■□□□□ 0.25
NUP88-204ENST00000572290 UBA52P62987 128 aaKnown RBP16.63■□□□□ 0.25
NUP88-204ENST00000572290 ACTG1P63261 375 aa16.63■□□□□ 0.25
NUP88-204ENST00000572290 BAMBIQ13145 260 aa16.63■□□□□ 0.25
NUP88-204ENST00000572290 PDCD1Q15116 288 aa16.63■□□□□ 0.25
NUP88-204ENST00000572290 SMIM21Q3B7S5 101 aa16.63■□□□□ 0.25
NUP88-204ENST00000572290 LPCAT4Q643R3 524 aa16.63■□□□□ 0.25
NUP88-204ENST00000572290 BRD3OSQ6XYD6 125 aa16.63■□□□□ 0.25
NUP88-204ENST00000572290 ANGPTL5Q86XS5 388 aa16.63■□□□□ 0.25
NUP88-204ENST00000572290 CALHM1Q8IU99 346 aa16.63■□□□□ 0.25
NUP88-204ENST00000572290 SYS1Q8N2H4 156 aa16.63■□□□□ 0.25
NUP88-204ENST00000572290 PACRGLQ8N7B6 248 aa16.63■□□□□ 0.25
NUP88-204ENST00000572290 PP6455Q8WZ26 134 aa16.63■□□□□ 0.25
NUP88-204ENST00000572290 H1FXQ92522 213 aaKnown RBP16.63■□□□□ 0.25
NUP88-204ENST00000572290 DMRTB1Q96MA1 342 aa16.63■□□□□ 0.25
NUP88-204ENST00000572290 PKIBQ9C010 78 aa16.63■□□□□ 0.25
NUP88-204ENST00000572290 MRPS18AQ9NVS2 196 aaKnown RBP16.63■□□□□ 0.25
NUP88-204ENST00000572290 MAB21L2Q9Y586 359 aa16.63■□□□□ 0.25
NUP88-204ENST00000572290 KPTNQ9Y664 436 aa16.63■□□□□ 0.25
NUP88-204ENST00000572290 NXPH2O95156 264 aa16.62■□□□□ 0.25
NUP88-204ENST00000572290 ISG15P05161 165 aa16.62■□□□□ 0.25
NUP88-204ENST00000572290 NDUFB7P17568 137 aa16.62■□□□□ 0.25
NUP88-204ENST00000572290 FUT6P51993 359 aa16.62■□□□□ 0.25
NUP88-204ENST00000572290 ALKBH1Q13686 389 aaKnown RBP16.62■□□□□ 0.25
NUP88-204ENST00000572290 KLHL22Q53GT1 634 aa16.62■□□□□ 0.25
NUP88-204ENST00000572290 EGFL6Q8IUX8 553 aa16.62■□□□□ 0.25
NUP88-204ENST00000572290 OR52I1Q8NGK6 324 aa16.62■□□□□ 0.25
NUP88-204ENST00000572290 SDSLQ96GA7 329 aa16.62■□□□□ 0.25
NUP88-204ENST00000572290 NRIP2Q9BQI9 281 aa16.62■□□□□ 0.25
NUP88-204ENST00000572290 ERVK13-1Q9NX77 482 aa16.62■□□□□ 0.25
NUP88-204ENST00000572290 ONECUT1Q9UBC0 465 aa16.62■□□□□ 0.25
NUP88-204ENST00000572290 CENPVL3A0A0U1RRI6 287 aa16.61■□□□□ 0.25
NUP88-204ENST00000572290 RFPL4AA6NLU0 287 aa16.61■□□□□ 0.25
NUP88-204ENST00000572290 ANKRD65E5RJM6 399 aa16.61■□□□□ 0.25
NUP88-204ENST00000572290 RFPL4AL1F8VTS6 287 aa16.61■□□□□ 0.25
NUP88-204ENST00000572290 WBP4O75554 376 aaKnown RBP16.61■□□□□ 0.25
NUP88-204ENST00000572290 PEX2P28328 305 aa16.61■□□□□ 0.25
NUP88-204ENST00000572290 CAV3P56539 151 aa16.61■□□□□ 0.25
NUP88-204ENST00000572290 IL24Q13007 206 aa16.61■□□□□ 0.25
NUP88-204ENST00000572290 CNN3Q15417 329 aaKnown RBP16.61■□□□□ 0.25
NUP88-204ENST00000572290 ZNF691Q5VV52 312 aa16.61■□□□□ 0.25
NUP88-204ENST00000572290 TTC23Q5W5X9 447 aa16.61■□□□□ 0.25
NUP88-204ENST00000572290 CMTM4Q8IZR5 234 aa16.61■□□□□ 0.25
NUP88-204ENST00000572290 BATF2Q8N1L9 274 aa16.61■□□□□ 0.25
NUP88-204ENST00000572290 ZNF676Q8N7Q3 588 aa16.61■□□□□ 0.25
NUP88-204ENST00000572290 ZNRF1Q8ND25 227 aa16.61■□□□□ 0.25
NUP88-204ENST00000572290 TMEM185AQ8NFB2 350 aa16.61■□□□□ 0.25
NUP88-204ENST00000572290 C8orf46Q8TAG6 207 aa16.61■□□□□ 0.25
NUP88-204ENST00000572290 CYGBQ8WWM9 190 aa16.61■□□□□ 0.25
NUP88-204ENST00000572290 LHX4Q969G2 390 aa16.61■□□□□ 0.25
NUP88-204ENST00000572290 FGGYQ96C11 551 aa16.61■□□□□ 0.25
NUP88-204ENST00000572290 ADAT3Q96EY9 351 aaPredicted RBP16.61■□□□□ 0.25
NUP88-204ENST00000572290 BORCS8Q96FH0 119 aa16.61■□□□□ 0.25
NUP88-204ENST00000572290 ZNF649Q9BS31 505 aa16.61■□□□□ 0.25
NUP88-204ENST00000572290 ISG20L2Q9H9L3 353 aaKnown RBP16.61■□□□□ 0.25
NUP88-204ENST00000572290 HHLA2Q9UM44 414 aa16.61■□□□□ 0.25
NUP88-204ENST00000572290 DNAJC9-AS1A6NH13 148 aa16.6■□□□□ 0.25
NUP88-204ENST00000572290 OR4C45A6NMZ5 311 aa16.6■□□□□ 0.25
NUP88-204ENST00000572290 CLIC3O95833 236 aa16.6■□□□□ 0.25
NUP88-204ENST00000572290 ZNF20P17024 532 aa16.6■□□□□ 0.25
NUP88-204ENST00000572290 PRTN3P24158 256 aa16.6■□□□□ 0.25
Retrieved 100 of 20,778 RNA–protein pairs in 29.3 ms