RNA–Protein interactions for RNA: ENST00000570510.6

VPS53-207, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 4

Gene VPS53, Length 570 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-207ENST00000570510 MRPL41Q8IXM3 137 aaKnown RBP8.91□□□□□ -0.98
VPS53-207ENST00000570510 TMEM185AQ8NFB2 350 aa8.91□□□□□ -0.98
VPS53-207ENST00000570510 OR56B2PQ8NGI1 322 aa8.91□□□□□ -0.98
VPS53-207ENST00000570510 FOXRED1Q96CU9 486 aaPredicted RBP8.91□□□□□ -0.98
VPS53-207ENST00000570510 ZNF799Q96GE5 643 aa8.91□□□□□ -0.98
VPS53-207ENST00000570510 RAB3IPQ96QF0 476 aaPredicted RBP8.91□□□□□ -0.98
VPS53-207ENST00000570510 MNTQ99583 582 aa8.91□□□□□ -0.98
VPS53-207ENST00000570510 NIPAL2Q9H841 368 aa8.91□□□□□ -0.98
VPS53-207ENST00000570510 A6NDX4 124 aa8.9□□□□□ -0.98
VPS53-207ENST00000570510 NUDT19A8MXV4 375 aa8.9□□□□□ -0.98
VPS53-207ENST00000570510 PRR23D1E9PI22 279 aaPredicted RBP8.9□□□□□ -0.98
VPS53-207ENST00000570510 H0YHG0 523 aa8.9□□□□□ -0.98
VPS53-207ENST00000570510 PRR23D2P0DMB1 279 aaPredicted RBP8.9□□□□□ -0.98
VPS53-207ENST00000570510 SPI1P17947 270 aa8.9□□□□□ -0.98
VPS53-207ENST00000570510 CFL1P23528 166 aaKnown RBP8.9□□□□□ -0.98
VPS53-207ENST00000570510 CRISP1P54107 249 aa8.9□□□□□ -0.98
VPS53-207ENST00000570510 OR12D2P58182 307 aa8.9□□□□□ -0.98
VPS53-207ENST00000570510 GRB2P62993 217 aaKnown RBP8.9□□□□□ -0.98
VPS53-207ENST00000570510 CSNK2BP67870 215 aa8.9□□□□□ -0.98
VPS53-207ENST00000570510 TMED1Q13445 227 aa8.9□□□□□ -0.98
VPS53-207ENST00000570510 CRMP1Q14194 572 aa8.9□□□□□ -0.98
VPS53-207ENST00000570510 GINS1Q14691 196 aa8.9□□□□□ -0.98
VPS53-207ENST00000570510 SSX2Q16385 188 aa8.9□□□□□ -0.98
VPS53-207ENST00000570510 DGUOKQ16854 277 aa8.9□□□□□ -0.98
VPS53-207ENST00000570510 RSPO1Q2MKA7 263 aaPredicted RBP8.9□□□□□ -0.98
VPS53-207ENST00000570510 SLC35F1Q5T1Q4 408 aa8.9□□□□□ -0.98
VPS53-207ENST00000570510 STUMQ69YW2 141 aa8.9□□□□□ -0.98
VPS53-207ENST00000570510 DEGS2Q6QHC5 323 aa8.9□□□□□ -0.98
VPS53-207ENST00000570510 WDR82Q6UXN9 313 aa8.9□□□□□ -0.98
VPS53-207ENST00000570510 Q6ZS46 218 aa8.9□□□□□ -0.98
VPS53-207ENST00000570510 OR1M1Q8NGA1 313 aa8.9□□□□□ -0.98
VPS53-207ENST00000570510 OR4Q3Q8NH05 313 aa8.9□□□□□ -0.98
VPS53-207ENST00000570510 AKR1E2Q96JD6 320 aa8.9□□□□□ -0.98
VPS53-207ENST00000570510 TSSK2Q96PF2 358 aa8.9□□□□□ -0.98
VPS53-207ENST00000570510 RCHY1Q96PM5 261 aa8.9□□□□□ -0.98
VPS53-207ENST00000570510 MRPL22Q9NWU5 206 aaKnown RBP8.9□□□□□ -0.98
VPS53-207ENST00000570510 COMMD3-BMI1R4GMX3 469 aa8.9□□□□□ -0.98
VPS53-207ENST00000570510 ACOD1A6NK06 481 aa8.89□□□□□ -0.99
VPS53-207ENST00000570510 ZNF878C9JN71 531 aa8.89□□□□□ -0.99
VPS53-207ENST00000570510 ARG1P05089 322 aa8.89□□□□□ -0.99
VPS53-207ENST00000570510 ACAA1P09110 424 aaPredicted RBP8.89□□□□□ -0.99
VPS53-207ENST00000570510 DCTDP32321 178 aa8.89□□□□□ -0.99
VPS53-207ENST00000570510 DDOSTP39656 456 aa8.89□□□□□ -0.99
VPS53-207ENST00000570510 RAB25P57735 213 aa8.89□□□□□ -0.99
VPS53-207ENST00000570510 ERVFRD-1P60508 538 aa8.89□□□□□ -0.99
VPS53-207ENST00000570510 TAF13Q15543 124 aa8.89□□□□□ -0.99
VPS53-207ENST00000570510 SNAI3Q3KNW1 292 aa8.89□□□□□ -0.99
VPS53-207ENST00000570510 TCTEX1D4Q5JR98 221 aa8.89□□□□□ -0.99
VPS53-207ENST00000570510 GLYATL3Q5SZD4 288 aa8.89□□□□□ -0.99
VPS53-207ENST00000570510 LINC01590Q5TEZ4 76 aa8.89□□□□□ -0.99
VPS53-207ENST00000570510 CFAP77Q6ZQR2 320 aa8.89□□□□□ -0.99
VPS53-207ENST00000570510 ZNF788Q6ZQV5 615 aa8.89□□□□□ -0.99
VPS53-207ENST00000570510 LHFPL4Q7Z7J7 247 aa8.89□□□□□ -0.99
VPS53-207ENST00000570510 TMEM179BQ7Z7N9 219 aa8.89□□□□□ -0.99
VPS53-207ENST00000570510 EGFL6Q8IUX8 553 aa8.89□□□□□ -0.99
VPS53-207ENST00000570510 OR52H1Q8NGJ2 320 aa8.89□□□□□ -0.99
VPS53-207ENST00000570510 TRUB1Q8WWH5 349 aaKnown RBP8.89□□□□□ -0.99
VPS53-207ENST00000570510 MALSU1Q96EH3 234 aa8.89□□□□□ -0.99
VPS53-207ENST00000570510 GAFA1Q96PS6 74 aa8.89□□□□□ -0.99
VPS53-207ENST00000570510 PRR25Q96S07 402 aa8.89□□□□□ -0.99
VPS53-207ENST00000570510 INTS14Q96SY0 518 aa8.89□□□□□ -0.99
VPS53-207ENST00000570510 RGCCQ9H4X1 137 aa8.89□□□□□ -0.99
VPS53-207ENST00000570510 ELL3Q9HB65 397 aaPredicted RBP8.89□□□□□ -0.99
VPS53-207ENST00000570510 PNRC2Q9NPJ4 139 aaKnown RBP8.89□□□□□ -0.99
VPS53-207ENST00000570510 C8orf4Q9NR00 106 aa8.89□□□□□ -0.99
VPS53-207ENST00000570510 TMEM14AQ9Y6G1 99 aa8.89□□□□□ -0.99
VPS53-207ENST00000570510 ANXA2P2A6NMY6 339 aa8.88□□□□□ -0.99
VPS53-207ENST00000570510 ZNF593O00488 134 aaPredicted RBP8.88□□□□□ -0.99
VPS53-207ENST00000570510 SIGLEC5O15389 551 aa8.88□□□□□ -0.99
VPS53-207ENST00000570510 RHBDL1O75783 438 aa8.88□□□□□ -0.99
VPS53-207ENST00000570510 SOX14O95416 240 aa8.88□□□□□ -0.99
VPS53-207ENST00000570510 TFF1P04155 84 aa8.88□□□□□ -0.99
VPS53-207ENST00000570510 AZGP1P25311 298 aaKnown RBP8.88□□□□□ -0.99
VPS53-207ENST00000570510 GSTT1P30711 240 aa8.88□□□□□ -0.99
VPS53-207ENST00000570510 DAPP51397 102 aa8.88□□□□□ -0.99
VPS53-207ENST00000570510 GP2P55259 537 aaKnown RBP8.88□□□□□ -0.99
VPS53-207ENST00000570510 RPL31P62899 125 aaKnown RBP8.88□□□□□ -0.99
VPS53-207ENST00000570510 EFNB1P98172 346 aa8.88□□□□□ -0.99
VPS53-207ENST00000570510 SLC34A1Q06495 639 aa8.88□□□□□ -0.99
VPS53-207ENST00000570510 PPP1R8Q12972 351 aaKnown RBP8.88□□□□□ -0.99
VPS53-207ENST00000570510 DYNC1I2Q13409 638 aaKnown RBP8.88□□□□□ -0.99
VPS53-207ENST00000570510 LCN1P1Q5VSP4 162 aa8.88□□□□□ -0.99
VPS53-207ENST00000570510 KCTD8Q6ZWB6 473 aa8.88□□□□□ -0.99
VPS53-207ENST00000570510 C11orf53Q8IXP5 236 aa8.88□□□□□ -0.99
VPS53-207ENST00000570510 CYB561A3Q8NBI2 242 aa8.88□□□□□ -0.99
VPS53-207ENST00000570510 ZNRF1Q8ND25 227 aa8.88□□□□□ -0.99
VPS53-207ENST00000570510 RNF133Q8WVZ7 376 aa8.88□□□□□ -0.99
VPS53-207ENST00000570510 KCNJ15Q99712 375 aa8.88□□□□□ -0.99
VPS53-207ENST00000570510 MICU1Q9BPX6 476 aa8.88□□□□□ -0.99
VPS53-207ENST00000570510 YIPF3Q9GZM5 350 aa8.88□□□□□ -0.99
VPS53-207ENST00000570510 WDR13Q9H1Z4 485 aa8.88□□□□□ -0.99
VPS53-207ENST00000570510 ZMAT4Q9H898 229 aa8.88□□□□□ -0.99
VPS53-207ENST00000570510 KRT84Q9NSB2 600 aa8.88□□□□□ -0.99
VPS53-207ENST00000570510 USE1Q9NZ43 259 aa8.88□□□□□ -0.99
VPS53-207ENST00000570510 TBL2Q9Y4P3 447 aaKnown RBP8.88□□□□□ -0.99
VPS53-207ENST00000570510 LSM4Q9Y4Z0 139 aaKnown RBP8.88□□□□□ -0.99
VPS53-207ENST00000570510 STAB2Q8WWQ8 2551 aa8.88□□□□□ -0.99
VPS53-207ENST00000570510 OR2AT4A6NND4 320 aa8.87□□□□□ -0.99
VPS53-207ENST00000570510 ZAR1LA6NP61 321 aa8.87□□□□□ -0.99
VPS53-207ENST00000570510 ANKHD1-EIF4EBP3H7C0V5 636 aaPredicted RBP8.87□□□□□ -0.99
Retrieved 100 of 20,778 RNA–protein pairs in 36.5 ms