RNA–Protein interactions for RNA: ENST00000568642.5

VPS35-209, Transcript of VPS35, retromer complex component, humanhuman

TSL 3

Gene VPS35, Length 447 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-209ENST00000568642 TRIM40Q6P9F5 258 aa2.4□□□□□ -2.03
VPS35-209ENST00000568642 LRRN1Q6UXK5 716 aa2.4□□□□□ -2.03
VPS35-209ENST00000568642 FAM92BQ6ZTR7 304 aa2.4□□□□□ -2.03
VPS35-209ENST00000568642 Q6ZVH6 145 aa2.4□□□□□ -2.03
VPS35-209ENST00000568642 AMIGO2Q86SJ2 522 aa2.4□□□□□ -2.03
VPS35-209ENST00000568642 MRPL52Q86TS9 123 aaKnown RBP2.4□□□□□ -2.03
VPS35-209ENST00000568642 PLA2G4DQ86XP0 818 aa2.4□□□□□ -2.03
VPS35-209ENST00000568642 SLC30A8Q8IWU4 369 aa2.4□□□□□ -2.03
VPS35-209ENST00000568642 OR6V1Q8N148 313 aa2.4□□□□□ -2.03
VPS35-209ENST00000568642 CA13Q8N1Q1 262 aa2.4□□□□□ -2.03
VPS35-209ENST00000568642 GAPTQ8N292 157 aa2.4□□□□□ -2.03
VPS35-209ENST00000568642 ZNF676Q8N7Q3 588 aa2.4□□□□□ -2.03
VPS35-209ENST00000568642 ZNF441Q8N8Z8 693 aa2.4□□□□□ -2.03
VPS35-209ENST00000568642 ACBD4Q8NC06 268 aa2.4□□□□□ -2.03
VPS35-209ENST00000568642 DUSP18Q8NEJ0 188 aa2.4□□□□□ -2.03
VPS35-209ENST00000568642 CCDC54Q8NEL0 328 aa2.4□□□□□ -2.03
VPS35-209ENST00000568642 OR6K3Q8NGY3 331 aa2.4□□□□□ -2.03
VPS35-209ENST00000568642 OR6F1Q8NGZ6 308 aa2.4□□□□□ -2.03
VPS35-209ENST00000568642 OR52N1Q8NH53 320 aa2.4□□□□□ -2.03
VPS35-209ENST00000568642 CT45A3Q8NHU0 189 aa2.4□□□□□ -2.03
VPS35-209ENST00000568642 SARAFQ96BY9 339 aa2.4□□□□□ -2.03
VPS35-209ENST00000568642 FAM19A4Q96LR4 140 aa2.4□□□□□ -2.03
VPS35-209ENST00000568642 ZNF385AQ96PM9 386 aaKnown RBP2.4□□□□□ -2.03
VPS35-209ENST00000568642 NODALQ96S42 347 aa2.4□□□□□ -2.03
VPS35-209ENST00000568642 MEIS3Q99687 375 aa2.4□□□□□ -2.03
VPS35-209ENST00000568642 FAM173AQ9BQD7 235 aa2.4□□□□□ -2.03
VPS35-209ENST00000568642 MRPL45Q9BRJ2 306 aaKnown RBP2.4□□□□□ -2.03
VPS35-209ENST00000568642 TM2D1Q9BX74 207 aa2.4□□□□□ -2.03
VPS35-209ENST00000568642 SLC19A3Q9BZV2 496 aa2.4□□□□□ -2.03
VPS35-209ENST00000568642 NXF2Q9GZY0 626 aaKnown RBP2.4□□□□□ -2.03
VPS35-209ENST00000568642 SLC22A4Q9H015 551 aa2.4□□□□□ -2.03
VPS35-209ENST00000568642 ING2Q9H160 280 aa2.4□□□□□ -2.03
VPS35-209ENST00000568642 CENPHQ9H3R5 247 aa2.4□□□□□ -2.03
VPS35-209ENST00000568642 PPDPFQ9H3Y8 114 aa2.4□□□□□ -2.03
VPS35-209ENST00000568642 PLEKHA3Q9HB20 300 aa2.4□□□□□ -2.03
VPS35-209ENST00000568642 ACOT13Q9NPJ3 140 aa2.4□□□□□ -2.03
VPS35-209ENST00000568642 ESM1Q9NQ30 184 aa2.4□□□□□ -2.03
VPS35-209ENST00000568642 C12orf4Q9NQ89 552 aa2.4□□□□□ -2.03
VPS35-209ENST00000568642 XPNPEP1Q9NQW7 623 aa2.4□□□□□ -2.03
VPS35-209ENST00000568642 FBXO8Q9NRD0 319 aa2.4□□□□□ -2.03
VPS35-209ENST00000568642 GID8Q9NWU2 228 aa2.4□□□□□ -2.03
VPS35-209ENST00000568642 SDHAF2Q9NX18 166 aa2.4□□□□□ -2.03
VPS35-209ENST00000568642 EHFQ9NZC4 300 aa2.4□□□□□ -2.03
VPS35-209ENST00000568642 ZNF224Q9NZL3 707 aa2.4□□□□□ -2.03
VPS35-209ENST00000568642 MYH7P12883 1935 aa2.4□□□□□ -2.03
VPS35-209ENST00000568642 MYO5AQ9Y4I1 1855 aaKnown RBP2.39□□□□□ -2.03
VPS35-209ENST00000568642 ABCA1O95477 2261 aa2.39□□□□□ -2.03
VPS35-209ENST00000568642 COL7A1Q02388 2944 aa2.39□□□□□ -2.03
VPS35-209ENST00000568642 A0A1W2PR80 420 aa2.39□□□□□ -2.03
VPS35-209ENST00000568642 C15orf61A6NNL5 157 aa2.39□□□□□ -2.03
VPS35-209ENST00000568642 M0R036 132 aa2.39□□□□□ -2.03
VPS35-209ENST00000568642 TNFRSF13BO14836 293 aaPredicted RBP2.39□□□□□ -2.03
VPS35-209ENST00000568642 IDH3BO43837 385 aa2.39□□□□□ -2.03
VPS35-209ENST00000568642 STX10O60499 249 aa2.39□□□□□ -2.03
VPS35-209ENST00000568642 CDC40O60508 579 aaKnown RBP eCLIP2.39□□□□□ -2.03
VPS35-209ENST00000568642 RAD1O60671 282 aa2.39□□□□□ -2.03
VPS35-209ENST00000568642 NPIPB7O75200 414 aa2.39□□□□□ -2.03
VPS35-209ENST00000568642 EEDO75530 441 aaKnown RBP2.39□□□□□ -2.03
VPS35-209ENST00000568642 PMS2P2O95744 297 aa2.39□□□□□ -2.03
VPS35-209ENST00000568642 RAB36O95755 333 aa2.39□□□□□ -2.03
VPS35-209ENST00000568642 LSM8O95777 96 aaKnown RBP2.39□□□□□ -2.03
VPS35-209ENST00000568642 LY6G6DO95868 133 aa2.39□□□□□ -2.03
VPS35-209ENST00000568642 IGHV4-39P01824 125 aa2.39□□□□□ -2.03
VPS35-209ENST00000568642 IFNA16P05015 189 aa2.39□□□□□ -2.03
VPS35-209ENST00000568642 BCHEP06276 602 aa2.39□□□□□ -2.03
VPS35-209ENST00000568642 PGA4P0DJD7 388 aa2.39□□□□□ -2.03
VPS35-209ENST00000568642 PGA3P0DJD8 388 aa2.39□□□□□ -2.03
VPS35-209ENST00000568642 SMIM10L2AP0DMW4 78 aa2.39□□□□□ -2.03
VPS35-209ENST00000568642 SMIM10L2BP0DMW5 78 aa2.39□□□□□ -2.03
VPS35-209ENST00000568642 HIST1H1EP10412 219 aaKnown RBP2.39□□□□□ -2.03
VPS35-209ENST00000568642 LIFP15018 202 aa2.39□□□□□ -2.03
VPS35-209ENST00000568642 USF1P22415 310 aaPredicted RBP2.39□□□□□ -2.03
VPS35-209ENST00000568642 SHC1P29353 583 aa2.39□□□□□ -2.03
VPS35-209ENST00000568642 MPIP34949 423 aa2.39□□□□□ -2.03
VPS35-209ENST00000568642 SSTR5P35346 364 aa2.39□□□□□ -2.03
VPS35-209ENST00000568642 FABP6P51161 128 aa2.39□□□□□ -2.03
VPS35-209ENST00000568642 CDKN2DP55273 166 aa2.39□□□□□ -2.03
VPS35-209ENST00000568642 PAX9P55771 341 aa2.39□□□□□ -2.03
VPS35-209ENST00000568642 DLX1P56177 255 aa2.39□□□□□ -2.03
VPS35-209ENST00000568642 PROK1P58294 105 aa2.39□□□□□ -2.03
VPS35-209ENST00000568642 RAB4BP61018 213 aa2.39□□□□□ -2.03
VPS35-209ENST00000568642 RPS13P62277 151 aaKnown RBP2.39□□□□□ -2.03
VPS35-209ENST00000568642 RPL32P62910 135 aaKnown RBP2.39□□□□□ -2.03
VPS35-209ENST00000568642 PSPHP78330 225 aa2.39□□□□□ -2.03
VPS35-209ENST00000568642 RPL18AQ02543 176 aaKnown RBP2.39□□□□□ -2.03
VPS35-209ENST00000568642 OR2F1Q13607 317 aa2.39□□□□□ -2.03
VPS35-209ENST00000568642 EIF2B1Q14232 305 aaKnown RBP2.39□□□□□ -2.03
VPS35-209ENST00000568642 GPR18Q14330 331 aa2.39□□□□□ -2.03
VPS35-209ENST00000568642 PRPSAP1Q14558 356 aa2.39□□□□□ -2.03
VPS35-209ENST00000568642 DAZAP2Q15038 168 aaPredicted RBP2.39□□□□□ -2.03
VPS35-209ENST00000568642 SLC1A5Q15758 541 aa2.39□□□□□ -2.03
VPS35-209ENST00000568642 PRSS8Q16651 343 aa2.39□□□□□ -2.03
VPS35-209ENST00000568642 TMEM30BQ3MIR4 351 aa2.39□□□□□ -2.03
VPS35-209ENST00000568642 SPIN4Q56A73 249 aa2.39□□□□□ -2.03
VPS35-209ENST00000568642 SPIN3Q5JUX0 258 aa2.39□□□□□ -2.03
VPS35-209ENST00000568642 FAM27D1Q5T7N8 215 aa2.39□□□□□ -2.03
VPS35-209ENST00000568642 PXDC1Q5TGL8 231 aa2.39□□□□□ -2.03
VPS35-209ENST00000568642 CYB5R2Q6BCY4 276 aa2.39□□□□□ -2.03
VPS35-209ENST00000568642 ZNF585AQ6P3V2 769 aa2.39□□□□□ -2.03
VPS35-209ENST00000568642 ACOT7LQ6ZUV0 252 aa2.39□□□□□ -2.03
Retrieved 100 of 20,778 RNA–protein pairs in 26.8 ms