RNA–Protein interactions for RNA: ENST00000568497.6

CLN3-235, Transcript of CLN3, battenin, humanhuman

TSL 3

Gene CLN3, Length 758 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-235ENST00000568497 PSORS1C1Q9UIG5 152 aa11.53□□□□□ -0.56
CLN3-235ENST00000568497 MPC1Q9Y5U8 109 aa11.53□□□□□ -0.56
CLN3-235ENST00000568497 A0A0G2JMP0 313 aa11.52□□□□□ -0.57
CLN3-235ENST00000568497 A0A0X1KG70 313 aa11.52□□□□□ -0.57
CLN3-235ENST00000568497 A0A1W2PPK0 400 aa11.52□□□□□ -0.57
CLN3-235ENST00000568497 OOEPA6NGQ2 149 aa11.52□□□□□ -0.57
CLN3-235ENST00000568497 LHBP01229 141 aa11.52□□□□□ -0.57
CLN3-235ENST00000568497 PRTN3P24158 256 aa11.52□□□□□ -0.57
CLN3-235ENST00000568497 SNU13P55769 128 aaKnown RBP11.52□□□□□ -0.57
CLN3-235ENST00000568497 IKZF1Q13422 519 aa11.52□□□□□ -0.57
CLN3-235ENST00000568497 CEACAM21Q3KPI0 293 aa11.52□□□□□ -0.57
CLN3-235ENST00000568497 CLVS2Q5SYC1 327 aa11.52□□□□□ -0.57
CLN3-235ENST00000568497 C6orf141Q5SZD1 244 aa11.52□□□□□ -0.57
CLN3-235ENST00000568497 TMEM42Q69YG0 159 aa11.52□□□□□ -0.57
CLN3-235ENST00000568497 KLHL36Q8N4N3 616 aa11.52□□□□□ -0.57
CLN3-235ENST00000568497 CELF2-AS1Q8N7Q2 184 aa11.52□□□□□ -0.57
CLN3-235ENST00000568497 SIGLECL1Q8N7X8 197 aa11.52□□□□□ -0.57
CLN3-235ENST00000568497 OR4M2Q8NGB6 313 aa11.52□□□□□ -0.57
CLN3-235ENST00000568497 OR13C3Q8NGS6 347 aa11.52□□□□□ -0.57
CLN3-235ENST00000568497 RAB39BQ96DA2 213 aa11.52□□□□□ -0.57
CLN3-235ENST00000568497 PLEKHA1Q9HB21 404 aa11.52□□□□□ -0.57
CLN3-235ENST00000568497 IL36RNQ9UBH0 155 aa11.52□□□□□ -0.57
CLN3-235ENST00000568497 DIMT1Q9UNQ2 313 aaKnown RBP11.52□□□□□ -0.57
CLN3-235ENST00000568497 PQLC2LA1A4F0 135 aa11.51□□□□□ -0.57
CLN3-235ENST00000568497 MEX3AA1L020 520 aaKnown RBP11.51□□□□□ -0.57
CLN3-235ENST00000568497 C22orf46C9J442 243 aa11.51□□□□□ -0.57
CLN3-235ENST00000568497 SLC1A7O00341 560 aa11.51□□□□□ -0.57
CLN3-235ENST00000568497 HAAOP46952 286 aa11.51□□□□□ -0.57
CLN3-235ENST00000568497 GBX2P52951 348 aaPredicted RBP11.51□□□□□ -0.57
CLN3-235ENST00000568497 ACTA2P62736 377 aa11.51□□□□□ -0.57
CLN3-235ENST00000568497 GNG3P63215 75 aa11.51□□□□□ -0.57
CLN3-235ENST00000568497 ACTG2P63267 376 aa11.51□□□□□ -0.57
CLN3-235ENST00000568497 IL18R1Q13478 541 aa11.51□□□□□ -0.57
CLN3-235ENST00000568497 ZNF181Q2M3W8 571 aa11.51□□□□□ -0.57
CLN3-235ENST00000568497 TMEM155Q4W5P6 130 aa11.51□□□□□ -0.57
CLN3-235ENST00000568497 ASPHD2Q6ICH7 369 aa11.51□□□□□ -0.57
CLN3-235ENST00000568497 METAP1DQ6UB28 335 aaPredicted RBP11.51□□□□□ -0.57
CLN3-235ENST00000568497 ZNF841Q6ZN19 808 aa11.51□□□□□ -0.57
CLN3-235ENST00000568497 STX19Q8N4C7 294 aa11.51□□□□□ -0.57
CLN3-235ENST00000568497 SPICQ8N5J4 248 aa11.51□□□□□ -0.57
CLN3-235ENST00000568497 SPERTQ8NA61 448 aa11.51□□□□□ -0.57
CLN3-235ENST00000568497 OR5D18Q8NGL1 313 aa11.51□□□□□ -0.57
CLN3-235ENST00000568497 OR13C9Q8NGT0 318 aa11.51□□□□□ -0.57
CLN3-235ENST00000568497 AQP3Q92482 292 aa11.51□□□□□ -0.57
CLN3-235ENST00000568497 SLAMF9Q96A28 289 aa11.51□□□□□ -0.57
CLN3-235ENST00000568497 TECTBQ96PL2 329 aa11.51□□□□□ -0.57
CLN3-235ENST00000568497 TMPRSS13Q9BYE2 586 aa11.51□□□□□ -0.57
CLN3-235ENST00000568497 TLNRD1Q9H1K6 362 aa11.51□□□□□ -0.57
CLN3-235ENST00000568497 MMP27Q9H306 513 aa11.51□□□□□ -0.57
CLN3-235ENST00000568497 DNAJB11Q9UBS4 358 aa11.51□□□□□ -0.57
CLN3-235ENST00000568497 TRBV2A0A0J9YWF9 115 aa11.5□□□□□ -0.57
CLN3-235ENST00000568497 DNAJC9-AS1A6NH13 148 aa11.5□□□□□ -0.57
CLN3-235ENST00000568497 TNFRSF13BO14836 293 aaPredicted RBP11.5□□□□□ -0.57
CLN3-235ENST00000568497 ANGPTL7O43827 346 aa11.5□□□□□ -0.57
CLN3-235ENST00000568497 MTRF1O75570 445 aaKnown RBP11.5□□□□□ -0.57
CLN3-235ENST00000568497 UBCP0CG48 685 aaKnown RBP11.5□□□□□ -0.57
CLN3-235ENST00000568497 MYL12AP19105 171 aa11.5□□□□□ -0.57
CLN3-235ENST00000568497 DCKP27707 260 aa11.5□□□□□ -0.57
CLN3-235ENST00000568497 MAP2K4P45985 399 aa11.5□□□□□ -0.57
CLN3-235ENST00000568497 GABRA2P47869 451 aa11.5□□□□□ -0.57
CLN3-235ENST00000568497 PITPNBP48739 271 aa11.5□□□□□ -0.57
CLN3-235ENST00000568497 POU3F4P49335 361 aa11.5□□□□□ -0.57
CLN3-235ENST00000568497 INSL4Q14641 139 aa11.5□□□□□ -0.57
CLN3-235ENST00000568497 FDX2Q6P4F2 183 aa11.5□□□□□ -0.57
CLN3-235ENST00000568497 Q6ZSR3 168 aa11.5□□□□□ -0.57
CLN3-235ENST00000568497 C1orf87Q8N0U7 546 aa11.5□□□□□ -0.57
CLN3-235ENST00000568497 SYS1Q8N2H4 156 aa11.5□□□□□ -0.57
CLN3-235ENST00000568497 OR51A2Q8NGJ7 313 aa11.5□□□□□ -0.57
CLN3-235ENST00000568497 TAF15Q92804 592 aaKnown RBP eCLIP11.5□□□□□ -0.57
CLN3-235ENST00000568497 NEIL1Q96FI4 390 aaPredicted RBP11.5□□□□□ -0.57
CLN3-235ENST00000568497 OR5M11Q96RB7 305 aa11.5□□□□□ -0.57
CLN3-235ENST00000568497 INPP5EQ9NRR6 644 aa11.5□□□□□ -0.57
CLN3-235ENST00000568497 FKBP14Q9NWM8 211 aa11.5□□□□□ -0.57
CLN3-235ENST00000568497 TAS2R4Q9NYW5 299 aa11.5□□□□□ -0.57
CLN3-235ENST00000568497 OPN4Q9UHM6 478 aa11.5□□□□□ -0.57
CLN3-235ENST00000568497 ZNF391Q9UJN7 358 aa11.5□□□□□ -0.57
CLN3-235ENST00000568497 NOP16Q9Y3C1 178 aaKnown RBP11.5□□□□□ -0.57
CLN3-235ENST00000568497 SRRM5B3KS81 715 aa11.49□□□□□ -0.57
CLN3-235ENST00000568497 MT-ND2P03891 347 aa11.49□□□□□ -0.57
CLN3-235ENST00000568497 ATP6V1B1P15313 513 aa11.49□□□□□ -0.57
CLN3-235ENST00000568497 ZNF20P17024 532 aa11.49□□□□□ -0.57
CLN3-235ENST00000568497 ATF1P18846 271 aa11.49□□□□□ -0.57
CLN3-235ENST00000568497 MDKP21741 143 aaPredicted RBP11.49□□□□□ -0.57
CLN3-235ENST00000568497 MYF6P23409 242 aa11.49□□□□□ -0.57
CLN3-235ENST00000568497 GLRA1P23415 457 aa11.49□□□□□ -0.57
CLN3-235ENST00000568497 GNB2P62879 340 aa11.49□□□□□ -0.57
CLN3-235ENST00000568497 CDK5R1Q15078 307 aa11.49□□□□□ -0.57
CLN3-235ENST00000568497 TMEM244Q5VVB8 128 aa11.49□□□□□ -0.57
CLN3-235ENST00000568497 DCAF12L2Q5VW00 463 aa11.49□□□□□ -0.57
CLN3-235ENST00000568497 WDR25Q64LD2 544 aaPredicted RBP11.49□□□□□ -0.57
CLN3-235ENST00000568497 CRIP3Q6Q6R5 217 aa11.49□□□□□ -0.57
CLN3-235ENST00000568497 KCTD20Q7Z5Y7 419 aa11.49□□□□□ -0.57
CLN3-235ENST00000568497 FTMTQ8N4E7 242 aa11.49□□□□□ -0.57
CLN3-235ENST00000568497 ZNF485Q8NCK3 441 aa11.49□□□□□ -0.57
CLN3-235ENST00000568497 OR8B3Q8NGG8 313 aa11.49□□□□□ -0.57
CLN3-235ENST00000568497 OR5A2Q8NGI9 324 aa11.49□□□□□ -0.57
CLN3-235ENST00000568497 OR5AK2Q8NH90 309 aa11.49□□□□□ -0.57
CLN3-235ENST00000568497 TSEN15Q8WW01 171 aaKnown RBP11.49□□□□□ -0.57
CLN3-235ENST00000568497 ST8SIA4Q92187 359 aa11.49□□□□□ -0.57
CLN3-235ENST00000568497 ERGIC1Q969X5 290 aa11.49□□□□□ -0.57
Retrieved 100 of 20,778 RNA–protein pairs in 41 ms