RNA–Protein interactions for RNA: ENST00000567963.6

CLN3-229, Transcript of CLN3, battenin, humanhuman

TSL 5 BASIC

Gene CLN3, Length 1,452 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-229ENST00000567963 EFNB1P98172 346 aa13.1□□□□□ -0.31
CLN3-229ENST00000567963 GABPB1Q06547 395 aaPredicted RBP13.1□□□□□ -0.31
CLN3-229ENST00000567963 ZNF684Q5T5D7 378 aa13.1□□□□□ -0.31
CLN3-229ENST00000567963 TMEM42Q69YG0 159 aa13.1□□□□□ -0.31
CLN3-229ENST00000567963 MEPCEQ7L2J0 689 aaKnown RBP13.1□□□□□ -0.31
CLN3-229ENST00000567963 BCDIN3DQ7Z5W3 292 aaKnown RBP13.1□□□□□ -0.31
CLN3-229ENST00000567963 ZNF573Q86YE8 665 aa13.1□□□□□ -0.31
CLN3-229ENST00000567963 ZNF561Q8N587 486 aa13.1□□□□□ -0.31
CLN3-229ENST00000567963 CD177Q8N6Q3 437 aa13.1□□□□□ -0.31
CLN3-229ENST00000567963 UTP4Q969X6 686 aaKnown RBP13.1□□□□□ -0.31
CLN3-229ENST00000567963 ZNF488Q96MN9 340 aa13.1□□□□□ -0.31
CLN3-229ENST00000567963 SSX3Q99909 188 aa13.1□□□□□ -0.31
CLN3-229ENST00000567963 MEGF9Q9H1U4 602 aa13.1□□□□□ -0.31
CLN3-229ENST00000567963 PPA2Q9H2U2 334 aa13.1□□□□□ -0.31
CLN3-229ENST00000567963 C19orf12Q9NSK7 152 aa13.1□□□□□ -0.31
CLN3-229ENST00000567963 FBLN5Q9UBX5 448 aa13.1□□□□□ -0.31
CLN3-229ENST00000567963 SLC22A31A6NKX4 558 aa13.1□□□□□ -0.31
CLN3-229ENST00000567963 H3BUX3 64 aa13.1□□□□□ -0.31
CLN3-229ENST00000567963 DLGAP1O14490 977 aa13.1□□□□□ -0.31
CLN3-229ENST00000567963 MAGEB4O15481 346 aaPredicted RBP13.1□□□□□ -0.31
CLN3-229ENST00000567963 SYNGR1O43759 233 aa13.1□□□□□ -0.31
CLN3-229ENST00000567963 ANGPTL7O43827 346 aa13.1□□□□□ -0.31
CLN3-229ENST00000567963 NOS1APO75052 506 aaPredicted RBP13.1□□□□□ -0.31
CLN3-229ENST00000567963 PGA5P0DJD9 388 aa13.1□□□□□ -0.31
CLN3-229ENST00000567963 PRDX2P32119 198 aa13.1□□□□□ -0.31
CLN3-229ENST00000567963 ACTR3P61158 418 aa13.1□□□□□ -0.31
CLN3-229ENST00000567963 RPL31P62899 125 aaKnown RBP13.1□□□□□ -0.31
CLN3-229ENST00000567963 EGR3Q06889 387 aa13.1□□□□□ -0.31
CLN3-229ENST00000567963 SMIM21Q3B7S5 101 aa13.1□□□□□ -0.31
CLN3-229ENST00000567963 CLVS2Q5SYC1 327 aa13.1□□□□□ -0.31
CLN3-229ENST00000567963 ZNF322Q6U7Q0 402 aaPredicted RBP13.1□□□□□ -0.31
CLN3-229ENST00000567963 MKXQ8IYA7 352 aa13.1□□□□□ -0.31
CLN3-229ENST00000567963 ELMOD2Q8IZ81 293 aa13.1□□□□□ -0.31
CLN3-229ENST00000567963 C11orf42Q8N5U0 333 aa13.1□□□□□ -0.31
CLN3-229ENST00000567963 OR5K1Q8NHB7 308 aa13.1□□□□□ -0.31
CLN3-229ENST00000567963 APOL4Q9BPW4 351 aa13.1□□□□□ -0.31
CLN3-229ENST00000567963 PRRG3Q9BZD7 231 aa13.1□□□□□ -0.31
CLN3-229ENST00000567963 FAM234AQ9H0X4 552 aa13.1□□□□□ -0.31
CLN3-229ENST00000567963 H2AFY2Q9P0M6 372 aaPredicted RBP13.1□□□□□ -0.31
CLN3-229ENST00000567963 GTF2A1LQ9UNN4 478 aa13.1□□□□□ -0.31
CLN3-229ENST00000567963 V9GYS6 101 aa13.1□□□□□ -0.31
CLN3-229ENST00000567963 NOTCH1P46531 2555 aa13.09□□□□□ -0.31
CLN3-229ENST00000567963 LOC110117498-PIK3R3F6TDL0 507 aa13.09□□□□□ -0.31
CLN3-229ENST00000567963 J3QT63 122 aa13.09□□□□□ -0.31
CLN3-229ENST00000567963 SLC1A7O00341 560 aa13.09□□□□□ -0.31
CLN3-229ENST00000567963 DNAJC8O75937 253 aaPredicted RBP13.09□□□□□ -0.31
CLN3-229ENST00000567963 AADACL4Q5VUY2 407 aa13.09□□□□□ -0.31
CLN3-229ENST00000567963 NXNL2Q5VZ03 156 aa13.09□□□□□ -0.31
CLN3-229ENST00000567963 TMEM200BQ69YZ2 307 aa13.09□□□□□ -0.31
CLN3-229ENST00000567963 SLC35F2Q8IXU6 374 aa13.09□□□□□ -0.31
CLN3-229ENST00000567963 TCEANCQ8N8B7 351 aa13.09□□□□□ -0.31
CLN3-229ENST00000567963 OR51G2Q8NGK0 314 aa13.09□□□□□ -0.31
CLN3-229ENST00000567963 PPP1R35Q8TAP8 253 aa13.09□□□□□ -0.31
CLN3-229ENST00000567963 MNTQ99583 582 aa13.09□□□□□ -0.31
CLN3-229ENST00000567963 MOB1AQ9H8S9 216 aa13.09□□□□□ -0.31
CLN3-229ENST00000567963 ADGRL4Q9HBW9 690 aa13.09□□□□□ -0.31
CLN3-229ENST00000567963 GPR173Q9NS66 373 aa13.09□□□□□ -0.31
CLN3-229ENST00000567963 ZKSCAN7Q9P0L1 754 aaPredicted RBP13.09□□□□□ -0.31
CLN3-229ENST00000567963 OR52A1Q9UKL2 312 aa13.09□□□□□ -0.31
CLN3-229ENST00000567963 POLDIP2Q9Y2S7 368 aa13.09□□□□□ -0.31
CLN3-229ENST00000567963 R4GMQ9 66 aa13.09□□□□□ -0.31
CLN3-229ENST00000567963 A0A1B0GTI1 187 aa13.08□□□□□ -0.32
CLN3-229ENST00000567963 A0A1W2PPH5 198 aa13.08□□□□□ -0.32
CLN3-229ENST00000567963 PQLC2LA1A4F0 135 aa13.08□□□□□ -0.32
CLN3-229ENST00000567963 M0R129 80 aa13.08□□□□□ -0.32
CLN3-229ENST00000567963 MITFO75030 526 aaPredicted RBP13.08□□□□□ -0.32
CLN3-229ENST00000567963 TSPAN15O95858 294 aa13.08□□□□□ -0.32
CLN3-229ENST00000567963 EPHA2P29317 976 aa13.08□□□□□ -0.32
CLN3-229ENST00000567963 CEBPDP49716 269 aaPredicted RBP13.08□□□□□ -0.32
CLN3-229ENST00000567963 BCL2L15Q5TBC7 163 aa13.08□□□□□ -0.32
CLN3-229ENST00000567963 PLEKHG7Q6ZR37 379 aa13.08□□□□□ -0.32
CLN3-229ENST00000567963 Q6ZSR3 168 aa13.08□□□□□ -0.32
CLN3-229ENST00000567963 ASRGL1Q7L266 308 aa13.08□□□□□ -0.32
CLN3-229ENST00000567963 OR14K1Q8NGZ2 314 aa13.08□□□□□ -0.32
CLN3-229ENST00000567963 TMEM163Q8TC26 289 aa13.08□□□□□ -0.32
CLN3-229ENST00000567963 RORBQ92753 470 aa13.08□□□□□ -0.32
CLN3-229ENST00000567963 NRIP2Q9BQI9 281 aa13.08□□□□□ -0.32
CLN3-229ENST00000567963 HEXA-AS1Q9H8Q6 139 aa13.08□□□□□ -0.32
CLN3-229ENST00000567963 HES4Q9HCC6 221 aa13.08□□□□□ -0.32
CLN3-229ENST00000567963 KRT84Q9NSB2 600 aa13.08□□□□□ -0.32
CLN3-229ENST00000567963 CLN6Q9NWW5 311 aa13.08□□□□□ -0.32
CLN3-229ENST00000567963 MRM2Q9UI43 246 aaKnown RBP13.08□□□□□ -0.32
CLN3-229ENST00000567963 SNX5Q9Y5X3 404 aa13.08□□□□□ -0.32
CLN3-229ENST00000567963 PRKDCP78527 4128 aaKnown RBP13.07□□□□□ -0.32
CLN3-229ENST00000567963 A6NIN4 97 aa13.07□□□□□ -0.32
CLN3-229ENST00000567963 DHRS7CA6NNS2 312 aa13.07□□□□□ -0.32
CLN3-229ENST00000567963 NXPH2O95156 264 aa13.07□□□□□ -0.32
CLN3-229ENST00000567963 GABRA5P31644 462 aa13.07□□□□□ -0.32
CLN3-229ENST00000567963 ERVFRD-1P60508 538 aa13.07□□□□□ -0.32
CLN3-229ENST00000567963 LY6EQ16553 131 aa13.07□□□□□ -0.32
CLN3-229ENST00000567963 AANATQ16613 207 aa13.07□□□□□ -0.32
CLN3-229ENST00000567963 C2orf68Q2NKX9 166 aa13.07□□□□□ -0.32
CLN3-229ENST00000567963 LRRC75BQ2VPJ9 315 aa13.07□□□□□ -0.32
CLN3-229ENST00000567963 SLX4IPQ5VYV7 408 aa13.07□□□□□ -0.32
CLN3-229ENST00000567963 CRIP3Q6Q6R5 217 aa13.07□□□□□ -0.32
CLN3-229ENST00000567963 OR4M1Q8NGD0 313 aa13.07□□□□□ -0.32
CLN3-229ENST00000567963 OR2T27Q8NH04 317 aa13.07□□□□□ -0.32
CLN3-229ENST00000567963 FAM110DQ8TAY7 271 aaPredicted RBP13.07□□□□□ -0.32
CLN3-229ENST00000567963 TET2Q6N021 2002 aaPredicted RBP13.06□□□□□ -0.32
CLN3-229ENST00000567963 hCG_1809904A0A1W2PP81 198 aa13.06□□□□□ -0.32
Retrieved 100 of 20,778 RNA–protein pairs in 38.3 ms