RNA–Protein interactions for RNA: ENST00000565778.6

CLN3-219, Transcript of CLN3, battenin, humanhuman

TSL 1 (best)

Gene CLN3, Length 688 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-219ENST00000565778 SYNGR1O43759 233 aa17.04■□□□□ 0.32
CLN3-219ENST00000565778 SULT1C4O75897 302 aa17.04■□□□□ 0.32
CLN3-219ENST00000565778 EEF1B2P24534 225 aaKnown RBP17.04■□□□□ 0.32
CLN3-219ENST00000565778 BLMHQ13867 455 aa17.04■□□□□ 0.32
CLN3-219ENST00000565778 ZIK1Q3SY52 487 aaPredicted RBP17.04■□□□□ 0.32
CLN3-219ENST00000565778 ACP7Q6ZNF0 438 aa17.04■□□□□ 0.32
CLN3-219ENST00000565778 CATSPERDQ86XM0 798 aa17.04■□□□□ 0.32
CLN3-219ENST00000565778 PIP4P2Q8N4L2 257 aa17.04■□□□□ 0.32
CLN3-219ENST00000565778 Q8N7P7 452 aa17.04■□□□□ 0.32
CLN3-219ENST00000565778 POC1AQ8NBT0 407 aa17.04■□□□□ 0.32
CLN3-219ENST00000565778 NPRL2Q8WTW4 380 aa17.04■□□□□ 0.32
CLN3-219ENST00000565778 RORBQ92753 470 aa17.04■□□□□ 0.32
CLN3-219ENST00000565778 ELL3Q9HB65 397 aaPredicted RBP17.04■□□□□ 0.32
CLN3-219ENST00000565778 AKAP8LQ9ULX6 646 aaKnown RBP eCLIP17.04■□□□□ 0.32
CLN3-219ENST00000565778 POLDIP2Q9Y2S7 368 aa17.04■□□□□ 0.32
CLN3-219ENST00000565778 CAB39Q9Y376 341 aaPredicted RBP17.04■□□□□ 0.32
CLN3-219ENST00000565778 A0A1W2PRD5 423 aa17.03■□□□□ 0.32
CLN3-219ENST00000565778 A0A1W2PRF3 423 aa17.03■□□□□ 0.32
CLN3-219ENST00000565778 A0A1W2PRM7 423 aa17.03■□□□□ 0.32
CLN3-219ENST00000565778 PQLC2LA1A4F0 135 aa17.03■□□□□ 0.32
CLN3-219ENST00000565778 DHRS7CA6NNS2 312 aa17.03■□□□□ 0.32
CLN3-219ENST00000565778 J3QT63 122 aa17.03■□□□□ 0.32
CLN3-219ENST00000565778 SYT7O43581 403 aa17.03■□□□□ 0.32
CLN3-219ENST00000565778 MDKP21741 143 aaPredicted RBP17.03■□□□□ 0.32
CLN3-219ENST00000565778 PRDX2P32119 198 aa17.03■□□□□ 0.32
CLN3-219ENST00000565778 DLX1P56177 255 aa17.03■□□□□ 0.32
CLN3-219ENST00000565778 GUCA2AQ02747 115 aa17.03■□□□□ 0.32
CLN3-219ENST00000565778 SMIM21Q3B7S5 101 aa17.03■□□□□ 0.32
CLN3-219ENST00000565778 ZFP1Q6P2D0 407 aa17.03■□□□□ 0.32
CLN3-219ENST00000565778 METAP1DQ6UB28 335 aaPredicted RBP17.03■□□□□ 0.32
CLN3-219ENST00000565778 C1orf122Q6ZSJ8 110 aa17.03■□□□□ 0.32
CLN3-219ENST00000565778 Q6ZSR3 168 aa17.03■□□□□ 0.32
CLN3-219ENST00000565778 ANGPTL5Q86XS5 388 aa17.03■□□□□ 0.32
CLN3-219ENST00000565778 C10orf67Q8IYJ2 551 aa17.03■□□□□ 0.32
CLN3-219ENST00000565778 SDSLQ96GA7 329 aa17.03■□□□□ 0.32
CLN3-219ENST00000565778 PLEKHA1Q9HB21 404 aa17.03■□□□□ 0.32
CLN3-219ENST00000565778 GNG8Q9UK08 70 aa17.03■□□□□ 0.32
CLN3-219ENST00000565778 ZNF222Q9UK12 451 aa17.03■□□□□ 0.32
CLN3-219ENST00000565778 SLC7A11Q9UPY5 501 aa17.03■□□□□ 0.32
CLN3-219ENST00000565778 FAM230AA0A1W2PPH8 454 aa17.02■□□□□ 0.32
CLN3-219ENST00000565778 RNASEK-C17orf49H0YIS7 233 aa17.02■□□□□ 0.32
CLN3-219ENST00000565778 EI24O14681 340 aa17.02■□□□□ 0.32
CLN3-219ENST00000565778 SPRY1O43609 319 aaPredicted RBP17.02■□□□□ 0.32
CLN3-219ENST00000565778 NOS1APO75052 506 aaPredicted RBP17.02■□□□□ 0.32
CLN3-219ENST00000565778 NXPH2O95156 264 aa17.02■□□□□ 0.32
CLN3-219ENST00000565778 ALPLP05186 524 aa17.02■□□□□ 0.32
CLN3-219ENST00000565778 PGA5P0DJD9 388 aa17.02■□□□□ 0.32
CLN3-219ENST00000565778 CD177Q8N6Q3 437 aa17.02■□□□□ 0.32
CLN3-219ENST00000565778 TRMT10AQ8TBZ6 339 aaKnown RBP17.02■□□□□ 0.32
CLN3-219ENST00000565778 HRASLS5Q96KN8 279 aa17.02■□□□□ 0.32
CLN3-219ENST00000565778 NBEAL1Q6ZS30 2694 aa17.02■□□□□ 0.31
CLN3-219ENST00000565778 ANKRD61A6NGH8 418 aa17.01■□□□□ 0.31
CLN3-219ENST00000565778 H0YAE9 185 aa17.01■□□□□ 0.31
CLN3-219ENST00000565778 H3BNX3 289 aa17.01■□□□□ 0.31
CLN3-219ENST00000565778 M0R1W7 72 aa17.01■□□□□ 0.31
CLN3-219ENST00000565778 SLC1A7O00341 560 aa17.01■□□□□ 0.31
CLN3-219ENST00000565778 NPFFO15130 113 aa17.01■□□□□ 0.31
CLN3-219ENST00000565778 ENTPD6O75354 484 aa17.01■□□□□ 0.31
CLN3-219ENST00000565778 SERPINA3P01011 423 aa17.01■□□□□ 0.31
CLN3-219ENST00000565778 IGHV4-59P01825 116 aa17.01■□□□□ 0.31
CLN3-219ENST00000565778 CCL1P22362 96 aa17.01■□□□□ 0.31
CLN3-219ENST00000565778 IER3P46695 156 aa17.01■□□□□ 0.31
CLN3-219ENST00000565778 ZNF85Q03923 595 aa17.01■□□□□ 0.31
CLN3-219ENST00000565778 KLRD1Q13241 179 aa17.01■□□□□ 0.31
CLN3-219ENST00000565778 TP53I3Q53FA7 332 aa17.01■□□□□ 0.31
CLN3-219ENST00000565778 FAM220AQ7Z4H9 259 aa17.01■□□□□ 0.31
CLN3-219ENST00000565778 FAM185AQ8N0U4 392 aa17.01■□□□□ 0.31
CLN3-219ENST00000565778 BATF2Q8N1L9 274 aa17.01■□□□□ 0.31
CLN3-219ENST00000565778 DPAGT1Q9H3H5 408 aa17.01■□□□□ 0.31
CLN3-219ENST00000565778 METTL8Q9H825 291 aaKnown RBP17.01■□□□□ 0.31
CLN3-219ENST00000565778 BEX1Q9HBH7 125 aa17.01■□□□□ 0.31
CLN3-219ENST00000565778 USE1Q9NZ43 259 aa17.01■□□□□ 0.31
CLN3-219ENST00000565778 C1RLQ9NZP8 487 aa17.01■□□□□ 0.31
CLN3-219ENST00000565778 DAPL1A0PJW8 107 aa17■□□□□ 0.31
CLN3-219ENST00000565778 FBP1P09467 338 aa17■□□□□ 0.31
CLN3-219ENST00000565778 ALDH3A2P51648 485 aa17■□□□□ 0.31
CLN3-219ENST00000565778 UBE2V2Q15819 145 aa17■□□□□ 0.31
CLN3-219ENST00000565778 LDLRAD3Q86YD5 345 aa17■□□□□ 0.31
CLN3-219ENST00000565778 CALHM1Q8IU99 346 aa17■□□□□ 0.31
CLN3-219ENST00000565778 ZNF561Q8N587 486 aa17■□□□□ 0.31
CLN3-219ENST00000565778 CCDC54Q8NEL0 328 aa17■□□□□ 0.31
CLN3-219ENST00000565778 OR4F5Q8NH21 305 aa17■□□□□ 0.31
CLN3-219ENST00000565778 DYRK2Q92630 601 aa17■□□□□ 0.31
CLN3-219ENST00000565778 TNFRSF14Q92956 283 aa17■□□□□ 0.31
CLN3-219ENST00000565778 RNFT2Q96EX2 444 aa17■□□□□ 0.31
CLN3-219ENST00000565778 NRIP2Q9BQI9 281 aa17■□□□□ 0.31
CLN3-219ENST00000565778 OR14J1Q9UGF5 321 aa17■□□□□ 0.31
CLN3-219ENST00000565778 TRBV23-1A0A0A0MS06 115 aa16.99■□□□□ 0.31
CLN3-219ENST00000565778 A0A1B0GUS0 222 aa16.99■□□□□ 0.31
CLN3-219ENST00000565778 MPZP25189 248 aa16.99■□□□□ 0.31
CLN3-219ENST00000565778 CEBPDP49716 269 aaPredicted RBP16.99■□□□□ 0.31
CLN3-219ENST00000565778 UBE2E1P51965 193 aa16.99■□□□□ 0.31
CLN3-219ENST00000565778 FUT6P51993 359 aa16.99■□□□□ 0.31
CLN3-219ENST00000565778 RAG2P55895 527 aa16.99■□□□□ 0.31
CLN3-219ENST00000565778 SNRPGP62308 76 aaKnown RBP16.99■□□□□ 0.31
CLN3-219ENST00000565778 OCLNQ16625 522 aa16.99■□□□□ 0.31
CLN3-219ENST00000565778 SLC25A30Q5SVS4 291 aa16.99■□□□□ 0.31
CLN3-219ENST00000565778 MEDAGQ5VYS4 303 aa16.99■□□□□ 0.31
CLN3-219ENST00000565778 NCR3LG1Q68D85 454 aa16.99■□□□□ 0.31
CLN3-219ENST00000565778 KCTD20Q7Z5Y7 419 aa16.99■□□□□ 0.31
Retrieved 100 of 20,778 RNA–protein pairs in 76.9 ms